Wall clock time and date at job start Tue Mar 31 2020 21:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00210 * 2 1 4 4 H 1.48500 * 109.47196 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47305 * 300.00326 * 3 2 1 6 6 H 1.48504 * 109.47111 * 60.00189 * 3 2 1 7 7 C 1.38819 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00084 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99591 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99956 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47517 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47636 * 179.97438 * 11 10 9 13 13 C 1.53038 * 109.46280 * 174.99982 * 12 11 10 14 14 C 1.53191 * 109.31261 * 181.38700 * 13 12 11 15 15 N 1.46926 * 108.77451 * 305.36750 * 14 13 12 16 16 C 1.34780 * 120.62707 * 233.58792 * 15 14 13 17 17 O 1.21280 * 120.00423 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99795 * 180.02562 * 16 15 14 19 19 O 1.42903 * 109.46878 * 179.97438 * 18 16 15 20 20 C 1.42899 * 113.99629 * 179.97438 * 19 18 16 21 21 C 1.53009 * 109.47113 * 180.02562 * 20 19 18 22 22 C 1.54268 * 110.02864 * 292.90910 * 21 20 19 23 23 C 1.54969 * 104.15418 * 217.13539 * 22 21 20 24 24 C 1.54887 * 102.78068 * 37.89023 * 23 22 21 25 25 C 1.53873 * 110.03142 * 175.69098 * 21 20 19 26 26 C 1.46921 * 118.74177 * 53.86188 * 15 14 13 27 27 C 1.53041 * 109.45914 * 295.07344 * 12 11 10 28 28 H 0.97001 * 119.99758 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00097 * 359.97438 * 9 7 2 30 30 H 1.08995 * 109.47437 * 59.99701 * 10 9 7 31 31 H 1.09003 * 109.46874 * 300.00034 * 10 9 7 32 32 H 1.09006 * 109.46562 * 59.99857 * 11 10 9 33 33 H 1.09000 * 109.47015 * 300.00475 * 11 10 9 34 34 H 1.08999 * 109.45604 * 55.02689 * 12 11 10 35 35 H 1.09002 * 109.49670 * 61.43645 * 13 12 11 36 36 H 1.09002 * 109.52529 * 301.35851 * 13 12 11 37 37 H 1.09003 * 109.58572 * 185.57865 * 14 13 12 38 38 H 1.08992 * 109.70469 * 65.22435 * 14 13 12 39 39 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 40 40 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 41 41 H 1.09007 * 109.47484 * 299.99646 * 20 19 18 42 42 H 1.09004 * 109.47459 * 59.99983 * 20 19 18 43 43 H 1.09000 * 110.01424 * 54.30131 * 21 20 19 44 44 H 1.08999 * 110.48556 * 335.77993 * 22 21 20 45 45 H 1.08992 * 110.48525 * 98.42602 * 22 21 20 46 46 H 1.08998 * 110.71629 * 279.57236 * 23 22 21 47 47 H 1.09006 * 110.92032 * 156.29916 * 23 22 21 48 48 H 1.08996 * 110.48888 * 203.40529 * 24 23 22 49 49 H 1.09003 * 110.60137 * 80.81280 * 24 23 22 50 50 H 1.09008 * 110.03086 * 238.56741 * 25 21 20 51 51 H 1.09001 * 110.03354 * 359.95236 * 25 21 20 52 52 H 1.08998 * 109.58542 * 65.92391 * 26 15 14 53 53 H 1.08999 * 109.58977 * 186.35239 * 26 15 14 54 54 H 1.08999 * 109.49703 * 298.55892 * 27 12 11 55 55 H 1.09000 * 109.50029 * 58.65926 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0637 -4.8197 0.0001 12 6 1.8287 -6.1448 -0.0005 13 6 0.8388 -7.3050 0.1259 14 6 1.6105 -8.6279 0.1597 15 7 2.4771 -8.7003 -1.0245 16 6 2.4231 -9.7637 -1.8509 17 8 1.6543 -10.6728 -1.6200 18 6 3.3189 -9.8235 -3.0613 19 8 3.0777 -11.0392 -3.7727 20 6 3.8802 -11.1956 -4.9447 21 6 3.5391 -12.5242 -5.6228 22 6 3.9804 -13.7019 -4.7295 23 6 4.4918 -14.7672 -5.7321 24 6 5.2057 -13.9109 -6.8074 25 6 4.3174 -12.6570 -6.9435 26 6 3.4080 -7.5945 -1.2874 27 6 2.6122 -6.2805 -1.3081 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 0.0002 30 1 2.6846 -3.7146 0.8894 31 1 2.6846 -3.7145 -0.8906 32 1 0.4367 -4.7621 -0.8897 33 1 0.4374 -4.7617 0.8903 34 1 2.5210 -6.1647 0.8411 35 1 0.1619 -7.3005 -0.7285 36 1 0.2643 -7.1952 1.0457 37 1 0.9078 -9.4612 0.1499 38 1 2.2201 -8.6748 1.0620 39 1 3.1087 -8.9740 -3.7112 40 1 4.3611 -9.7892 -2.7441 41 1 3.6810 -10.3748 -5.6338 42 1 4.9342 -11.1892 -4.6670 43 1 2.4674 -12.5813 -5.8135 44 1 4.7827 -13.3928 -4.0595 45 1 3.1343 -14.0873 -4.1607 46 1 3.6583 -15.3181 -6.1678 47 1 5.1942 -15.4484 -5.2518 48 1 5.2533 -14.4492 -7.7539 49 1 6.2067 -13.6350 -6.4756 50 1 3.6234 -12.7795 -7.7751 51 1 4.9374 -11.7746 -7.1018 52 1 4.1614 -7.5562 -0.5007 53 1 3.8917 -7.7455 -2.2524 54 1 1.9186 -6.2856 -2.1490 55 1 3.3005 -5.4413 -1.4087 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495416123.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:59 Heat of formation + Delta-G solvation = -118.639858 kcal Electronic energy + Delta-G solvation = -29106.643169 eV Core-core repulsion = 25141.680873 eV Total energy + Delta-G solvation = -3964.962296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.33451 -39.78058 -38.98630 -37.75836 -36.85811 -35.06772 -33.13519 -32.27567 -31.43514 -30.08492 -29.57010 -28.62098 -26.40616 -25.22314 -24.48243 -24.28191 -22.53671 -21.55859 -21.43567 -20.67286 -19.97206 -19.12344 -18.48712 -17.58694 -17.37138 -16.98439 -16.66552 -16.32716 -16.04179 -15.91149 -15.66017 -15.47311 -15.32918 -15.00548 -14.84166 -14.59805 -14.25759 -14.16737 -14.13994 -13.84536 -13.34066 -13.20418 -13.03948 -12.86822 -12.80519 -12.48750 -12.29018 -12.21919 -12.13428 -12.05180 -11.97886 -11.96074 -11.90854 -11.70151 -11.62441 -11.49016 -11.37845 -11.32897 -11.18891 -10.88639 -10.75813 -10.65294 -9.69060 -8.98028 -7.94912 -5.23734 1.47970 1.48876 1.51207 1.59036 1.70990 2.56665 2.80222 3.39282 3.48747 3.69333 3.69858 3.72536 3.78434 3.87519 3.92178 4.11247 4.12594 4.20241 4.23242 4.34804 4.35172 4.40825 4.41742 4.49689 4.52327 4.56836 4.59689 4.64202 4.68680 4.74973 4.79024 4.83193 4.84531 4.91283 4.91532 4.97369 5.06179 5.06677 5.09356 5.09783 5.22551 5.25055 5.30849 5.34719 5.40260 5.46341 5.48009 5.50660 5.55263 5.59191 6.09191 6.28020 6.36919 7.10517 7.33512 8.11695 8.33046 9.29200 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019635 B = 0.001601 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.712395 B =17482.424837 C =18485.382274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.244 4.244 8 H 0.078 0.922 9 N -0.752 5.752 10 C 0.151 3.849 11 C -0.109 4.109 12 C -0.074 4.074 13 C -0.121 4.121 14 C 0.114 3.886 15 N -0.607 5.607 16 C 0.509 3.491 17 O -0.578 6.578 18 C 0.046 3.954 19 O -0.395 6.395 20 C 0.064 3.936 21 C -0.095 4.095 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.123 4.123 25 C -0.115 4.115 26 C 0.106 3.894 27 C -0.131 4.131 28 H 0.250 0.750 29 H 0.371 0.629 30 H 0.019 0.981 31 H 0.030 0.970 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.048 0.952 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.071 0.929 50 H 0.071 0.929 51 H 0.077 0.923 52 H 0.093 0.907 53 H 0.108 0.892 54 H 0.058 0.942 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.677 -28.250 -10.988 33.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.376 4.376 8 H 0.096 0.904 9 N -0.394 5.394 10 C 0.025 3.975 11 C -0.147 4.147 12 C -0.093 4.093 13 C -0.160 4.160 14 C -0.008 4.008 15 N -0.341 5.341 16 C 0.298 3.702 17 O -0.457 6.457 18 C -0.033 4.033 19 O -0.314 6.314 20 C -0.012 4.012 21 C -0.113 4.113 22 C -0.154 4.154 23 C -0.164 4.164 24 C -0.160 4.160 25 C -0.152 4.152 26 C -0.015 4.015 27 C -0.169 4.169 28 H 0.059 0.941 29 H 0.202 0.798 30 H 0.037 0.963 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.119 0.881 40 H 0.127 0.873 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.096 0.904 52 H 0.111 0.889 53 H 0.126 0.874 54 H 0.077 0.923 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.326 -28.778 -10.820 33.508 hybrid contribution -0.537 1.428 0.177 1.536 sum 12.789 -27.350 -10.642 32.013 Atomic orbital electron populations 1.69831 1.06750 1.25975 1.59757 1.25607 0.96400 1.01263 1.03821 0.85056 0.78347 0.79654 0.76611 1.18734 1.22087 1.22132 1.19726 0.91622 0.85401 1.40865 0.90362 1.42686 1.05663 1.01625 1.89413 1.20901 0.94223 0.84533 0.97839 1.21633 0.97930 0.93913 1.01230 1.21010 0.96969 0.92420 0.98908 1.21895 0.97840 0.93477 1.02742 1.21601 0.93803 0.97953 0.87431 1.48205 1.40218 1.19834 1.25821 1.20866 0.83452 0.81476 0.84454 1.90687 1.41365 1.38902 1.74755 1.22365 0.99456 0.89362 0.92124 1.87982 1.64167 1.38858 1.40442 1.22915 0.94590 0.97853 0.85793 1.21797 1.00528 0.93544 0.95459 1.22361 1.00178 0.95368 0.97463 1.22549 1.00044 0.97341 0.96512 1.22367 0.98814 0.95674 0.99160 1.22129 0.98498 0.99154 0.95438 1.22141 0.91121 0.84172 1.04100 1.22100 0.99742 0.97720 0.97349 0.94074 0.79753 0.96261 0.95259 0.93123 0.92694 0.89782 0.92838 0.89885 0.90829 0.89604 0.88071 0.87349 0.91855 0.91461 0.91748 0.91732 0.93279 0.91669 0.91048 0.90753 0.91021 0.91045 0.90402 0.88868 0.87364 0.92282 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.94 13.06 21.65 0.28 -59.66 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 3 Si 0.97 45.81 29.55 68.60 2.03 47.84 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.24 -13.61 9.99 84.04 0.84 -12.77 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.75 -38.22 5.60 -343.47 -1.92 -40.14 16 10 C 0.15 5.70 6.01 86.38 0.52 6.22 16 11 C -0.11 -3.28 4.80 30.59 0.15 -3.13 16 12 C -0.07 -1.59 2.15 -10.77 -0.02 -1.61 16 13 C -0.12 -2.50 5.36 30.67 0.16 -2.33 16 14 C 0.11 2.28 6.43 86.36 0.56 2.83 16 15 N -0.61 -11.56 2.97 -818.07 -2.43 -13.99 16 16 C 0.51 11.94 7.78 87.66 0.68 12.62 16 17 O -0.58 -19.38 15.91 16.01 0.25 -19.13 16 18 C 0.05 0.74 4.76 71.24 0.34 1.07 16 19 O -0.40 -8.38 9.71 -129.94 -1.26 -9.64 16 20 C 0.06 0.88 4.98 71.99 0.36 1.24 16 21 C -0.09 -1.34 3.19 -10.07 -0.03 -1.37 16 22 C -0.12 -1.76 6.22 31.70 0.20 -1.56 16 23 C -0.13 -1.43 6.91 31.91 0.22 -1.21 16 24 C -0.12 -1.08 6.83 31.67 0.22 -0.87 16 25 C -0.11 -1.10 6.46 31.32 0.20 -0.90 16 26 C 0.11 1.40 6.37 86.51 0.55 1.95 16 27 C -0.13 -2.39 5.16 30.82 0.16 -2.23 16 28 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 29 H 0.37 20.29 7.67 -92.71 -0.71 19.58 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.03 1.07 6.53 -2.39 -0.02 1.05 16 32 H 0.05 1.62 8.14 -2.38 -0.02 1.61 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.76 7.01 -2.39 -0.02 1.74 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.10 1.17 7.70 -2.39 -0.02 1.15 16 40 H 0.11 1.05 7.93 -2.39 -0.02 1.03 16 41 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.07 0.69 8.02 -2.38 -0.02 0.67 16 43 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.06 0.98 7.77 -2.39 -0.02 0.96 16 45 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 48 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 51 H 0.08 0.57 7.67 -2.39 -0.02 0.56 16 52 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 53 H 0.11 0.86 5.93 -2.39 -0.01 0.85 16 54 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 55 H 0.09 1.61 6.50 -2.39 -0.02 1.59 16 Total: -1.00 -75.27 424.31 2.65 -72.62 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.13 Total: 28.21 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 5.56 Total: -6.13 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -4.07 Total: -113.78 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -1.01 Total: -28.77 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -75.27 2.65 -72.62 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495416123.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.015 kcal (2) G-P(sol) polarization free energy of solvation -75.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds