Wall clock time and date at job start Tue Mar 31 2020 20:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 110.99960 * 2 1 4 4 C 1.46904 * 111.00069 * 123.95637 * 2 1 3 5 5 C 1.52996 * 109.47382 * 76.92462 * 4 2 1 6 6 C 1.50705 * 115.55344 * 49.61294 * 5 4 2 7 7 O 1.21277 * 120.00162 * 144.05048 * 6 5 4 8 8 N 1.34777 * 119.99440 * 324.05845 * 6 5 4 9 9 C 1.46502 * 119.99487 * 184.75707 * 8 6 5 10 10 C 1.53002 * 109.47386 * 188.71787 * 9 8 6 11 11 H 1.08997 * 112.95127 * 57.84742 * 10 9 8 12 12 C 1.53934 * 113.76137 * 189.49518 * 10 9 8 13 13 C 1.53934 * 86.33854 * 138.04023 * 12 10 9 14 14 N 1.47958 * 113.75844 * 286.20402 * 10 9 8 15 15 C 1.46903 * 110.99849 * 108.09964 * 14 10 9 16 16 C 1.50698 * 109.47013 * 176.39977 * 15 14 10 17 17 O 1.21290 * 120.00354 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99784 * 179.97438 * 16 15 14 19 19 C 1.37095 * 119.99660 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00375 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99954 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99872 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00147 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46691 * 60.00551 * 23 21 19 25 25 H 1.48494 * 109.47152 * 180.02562 * 23 21 19 26 26 H 1.48491 * 109.47432 * 300.00356 * 23 21 19 27 27 C 1.53006 * 117.49471 * 263.90988 * 5 4 2 28 28 C 1.53003 * 117.49964 * 195.28923 * 5 4 2 29 29 H 1.08997 * 109.46790 * 299.21462 * 1 2 3 30 30 H 1.09000 * 109.47228 * 59.21792 * 1 2 3 31 31 H 1.09000 * 109.47070 * 179.21596 * 1 2 3 32 32 H 1.09004 * 109.47183 * 183.95096 * 3 2 1 33 33 H 1.09001 * 109.47079 * 303.95387 * 3 2 1 34 34 H 1.09003 * 109.46942 * 63.95491 * 3 2 1 35 35 H 1.08999 * 109.46956 * 316.91696 * 4 2 1 36 36 H 1.09007 * 109.46753 * 196.92432 * 4 2 1 37 37 H 0.96998 * 120.00725 * 4.75808 * 8 6 5 38 38 H 1.09003 * 109.47121 * 308.72331 * 9 8 6 39 39 H 1.09002 * 109.46998 * 68.72082 * 9 8 6 40 40 H 1.09003 * 113.73111 * 252.39880 * 12 10 9 41 41 H 1.08999 * 113.73273 * 23.57858 * 12 10 9 42 42 H 1.08995 * 113.76211 * 90.59901 * 13 12 10 43 43 H 1.09001 * 113.75904 * 221.85565 * 13 12 10 44 44 H 1.09005 * 109.47041 * 296.39812 * 15 14 10 45 45 H 1.09002 * 109.47463 * 56.39448 * 15 14 10 46 46 H 0.96996 * 120.00367 * 0.02562 * 18 16 15 47 47 H 0.96996 * 119.99848 * 179.97438 * 22 21 19 48 48 H 1.08991 * 117.49945 * 359.97438 * 27 5 4 49 49 H 1.09004 * 117.49549 * 145.02257 * 27 5 4 50 50 H 1.08998 * 117.49364 * 214.97551 * 28 5 4 51 51 H 1.09000 * 117.49737 * 359.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.8736 -2.2628 0.8447 6 6 2.4039 -2.7086 -0.4936 7 8 2.9542 -3.7841 -0.6002 8 7 2.2666 -1.9120 -1.5721 9 6 2.6875 -2.3876 -2.8923 10 6 2.6300 -1.2317 -3.8930 11 1 3.2491 -0.3840 -3.5994 12 6 2.8284 -1.6675 -5.3560 13 6 1.6904 -0.6891 -5.6984 14 7 1.2555 -0.8563 -4.2917 15 6 0.8696 0.4325 -3.7015 16 6 -0.4980 0.8235 -4.1991 17 8 -1.0927 0.1001 -4.9700 18 7 -1.0605 1.9771 -3.7875 19 6 -2.3045 2.3330 -4.2407 20 1 -2.8339 1.6889 -4.9271 21 6 -2.8841 3.5226 -3.8168 22 7 -2.2397 4.3067 -2.9820 23 14 -4.5794 4.0073 -4.4336 24 1 -5.5648 2.9682 -4.0407 25 1 -4.9692 5.3103 -3.8375 26 1 -4.5517 4.1290 -5.9133 27 6 0.6488 -2.9935 1.3989 28 6 2.0264 -3.2277 2.0222 29 1 -0.3633 0.5016 0.8969 30 1 -0.3634 0.5259 -0.8829 31 1 -0.3633 -1.0276 -0.0141 32 1 3.0828 1.3433 -0.0708 33 1 1.5897 1.9163 -0.8524 34 1 1.7043 1.8723 0.9233 35 1 1.4249 -0.5235 2.0341 36 1 3.0436 -0.5105 1.2937 37 1 1.8892 -1.0238 -1.4742 38 1 3.7077 -2.7670 -2.8335 39 1 2.0215 -3.1856 -3.2203 40 1 3.7941 -1.3802 -5.7722 41 1 2.5806 -2.7129 -5.5398 42 1 2.0333 0.3184 -5.9334 43 1 0.9816 -1.0784 -6.4293 44 1 0.8492 0.3431 -2.6153 45 1 1.5930 1.1953 -3.9897 46 1 -0.5849 2.5558 -3.1714 47 1 -2.6442 5.1373 -2.6864 48 1 -0.0697 -2.4081 1.9723 49 1 0.2264 -3.7969 0.7953 50 1 2.5101 -4.1851 1.8287 51 1 2.2141 -2.7963 3.0054 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499047554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:02 Heat of formation + Delta-G solvation = 4.959118 kcal Electronic energy + Delta-G solvation = -31533.018810 eV Core-core repulsion = 27469.875824 eV Total energy + Delta-G solvation = -4063.142986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.45771 -39.73861 -37.81509 -37.52412 -36.02492 -34.12031 -33.87298 -31.35264 -30.50419 -28.84603 -27.73349 -27.60268 -25.74234 -24.07564 -23.66899 -22.69900 -22.51490 -21.67739 -19.92200 -19.27830 -19.05695 -17.91567 -17.02713 -16.27424 -16.08105 -15.67168 -15.63472 -15.27416 -14.93734 -14.83952 -14.66891 -14.41227 -14.28927 -14.00193 -13.77205 -13.66143 -13.37710 -12.71083 -12.53308 -12.39629 -12.26518 -12.05931 -11.95144 -11.87382 -11.75771 -11.62738 -11.61336 -11.41451 -11.27242 -11.05259 -10.72662 -10.57315 -10.53554 -10.46243 -10.23338 -10.22519 -9.59209 -9.51019 -8.71183 -8.68682 -8.62672 -8.19211 -7.98092 -6.44324 -3.84592 2.66551 3.17771 3.23483 3.27925 3.30525 3.60916 3.86655 3.89034 3.98012 4.20581 4.53264 4.58700 4.63911 4.75163 4.81337 4.98942 5.01167 5.07836 5.15841 5.20158 5.21842 5.30386 5.36308 5.45642 5.46705 5.51803 5.55364 5.57942 5.61181 5.68224 5.72375 5.76629 5.78526 5.82107 5.92402 5.98387 6.01737 6.07931 6.11562 6.27333 6.36301 6.64759 6.71382 6.72513 6.83815 7.27639 7.52714 7.99401 8.03791 8.59834 8.59970 9.16457 9.52005 10.04838 10.73375 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010963 B = 0.003760 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.535724 B = 7444.162792 C = 9118.756307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.548 5.548 3 C 0.017 3.983 4 C 0.090 3.910 5 C -0.157 4.157 6 C 0.552 3.448 7 O -0.563 6.563 8 N -0.709 5.709 9 C 0.137 3.863 10 C 0.012 3.988 11 H 0.080 0.920 12 C -0.136 4.136 13 C 0.015 3.985 14 N -0.442 5.442 15 C 0.008 3.992 16 C 0.446 3.554 17 O -0.575 6.575 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.101 0.899 21 C 0.024 3.976 22 N -0.904 5.904 23 Si 0.928 3.072 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C -0.151 4.151 28 C -0.142 4.142 29 H 0.034 0.966 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.035 0.965 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.419 0.581 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.051 0.949 46 H 0.390 0.610 47 H 0.271 0.729 48 H 0.102 0.898 49 H 0.100 0.900 50 H 0.109 0.891 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.130 -6.706 8.868 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.273 5.273 3 C -0.131 4.131 4 C -0.038 4.038 5 C -0.160 4.160 6 C 0.338 3.662 7 O -0.443 6.443 8 N -0.372 5.372 9 C 0.012 3.988 10 C -0.098 4.098 11 H 0.097 0.903 12 C -0.175 4.175 13 C -0.113 4.113 14 N -0.165 5.165 15 C -0.125 4.125 16 C 0.231 3.769 17 O -0.458 6.458 18 N -0.203 5.203 19 C -0.427 4.427 20 H 0.119 0.881 21 C -0.178 4.178 22 N -0.545 5.545 23 Si 0.755 3.245 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.200 1.200 27 C -0.189 4.189 28 C -0.180 4.180 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.269 0.731 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.069 0.931 46 H 0.223 0.777 47 H 0.081 0.919 48 H 0.120 0.880 49 H 0.118 0.882 50 H 0.127 0.873 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.594 -8.315 8.056 16.385 hybrid contribution -0.469 2.330 0.777 2.501 sum 11.125 -5.985 8.834 15.415 Atomic orbital electron populations 1.22615 0.85656 1.03042 1.02120 1.61406 1.09502 1.14446 1.41914 1.22516 1.00575 0.88021 1.01971 1.21676 1.00695 0.89578 0.91880 1.21508 1.05953 0.94210 0.94356 1.19238 0.78500 0.83865 0.84610 1.90642 1.44316 1.23369 1.85977 1.46804 1.63231 1.21210 1.05921 1.21228 1.00112 0.95807 0.81651 1.23748 0.92323 0.98124 0.95563 0.90254 1.23341 0.98948 1.01204 0.93978 1.23769 0.96183 0.98265 0.93118 1.68482 1.19278 1.25237 1.03499 1.22556 0.97057 0.91866 1.00977 1.19700 0.87654 0.83441 0.86064 1.90530 1.64363 1.52690 1.38181 1.41842 1.17401 1.18675 1.42427 1.19634 0.93031 1.04487 1.25537 0.88073 1.25207 0.99884 0.95955 0.96736 1.69592 1.38836 1.13036 1.33052 0.85957 0.81875 0.77626 0.79022 1.19920 1.21019 1.19956 1.23073 0.90763 1.02339 1.02684 1.22983 0.99412 1.00374 0.95196 0.94702 0.89996 0.90795 0.91201 0.90248 0.94673 0.92880 0.89981 0.73084 0.91251 0.91255 0.91001 0.88921 0.91663 0.88793 0.89071 0.93120 0.77735 0.91926 0.87982 0.88159 0.87281 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 8.97 60.06 0.54 0.70 16 2 N -0.55 -5.83 1.50 -251.25 -0.38 -6.21 16 3 C 0.02 0.16 9.51 60.07 0.57 0.73 16 4 C 0.09 0.86 4.96 -3.82 -0.02 0.84 16 5 C -0.16 -1.76 1.93 -155.66 -0.30 -2.07 16 6 C 0.55 8.09 7.37 -10.98 -0.08 8.01 16 7 O -0.56 -9.91 16.18 5.56 0.09 -9.82 16 8 N -0.71 -9.91 5.46 -60.29 -0.33 -10.24 16 9 C 0.14 1.87 5.78 -4.04 -0.02 1.85 16 10 C 0.01 0.16 3.35 -66.66 -0.22 -0.06 16 11 H 0.08 0.95 7.89 -51.93 -0.41 0.54 16 12 C -0.14 -1.59 7.86 -25.79 -0.20 -1.79 16 13 C 0.02 0.23 7.21 -2.64 -0.02 0.21 16 14 N -0.44 -7.26 5.64 -231.14 -1.30 -8.56 16 15 C 0.01 0.13 5.22 -4.97 -0.03 0.10 16 16 C 0.45 10.26 7.66 -10.98 -0.08 10.18 16 17 O -0.57 -15.42 15.50 5.55 0.09 -15.33 16 18 N -0.57 -13.75 5.29 -10.96 -0.06 -13.81 16 19 C -0.30 -8.06 9.68 -14.93 -0.14 -8.21 16 20 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -23.65 13.05 55.50 0.72 -22.93 16 23 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 C -0.15 -1.53 8.86 -26.73 -0.24 -1.76 16 28 C -0.14 -1.37 9.76 -26.73 -0.26 -1.63 16 29 H 0.03 0.38 8.13 -51.93 -0.42 -0.04 16 30 H 0.08 1.17 7.20 -51.93 -0.37 0.80 16 31 H 0.07 0.91 6.71 -51.93 -0.35 0.56 16 32 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.45 7.89 -51.93 -0.41 0.04 16 36 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 37 H 0.42 5.60 3.52 -40.82 -0.14 5.46 16 38 H 0.07 0.91 8.02 -51.93 -0.42 0.50 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 42 H 0.07 0.94 7.68 -51.93 -0.40 0.54 16 43 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.09 1.46 5.44 -51.93 -0.28 1.17 16 45 H 0.05 0.80 7.68 -51.93 -0.40 0.40 16 46 H 0.39 8.97 7.90 -40.82 -0.32 8.65 16 47 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 48 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.11 1.19 7.67 -51.93 -0.40 0.79 16 51 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 407.46 15.07 6.14 6.14 Total: -1.00 -32.30 407.46 -9.12 -41.43 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -8.46 Total: 16.07 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -0.61 Total: 7.61 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -1.34 Total: -61.75 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: 0.18 Total: -25.15 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.30 -9.12 -41.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499047554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.384 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds