Wall clock time and date at job start Tue Mar 31 2020 20:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 110.99960 * 2 1 4 4 C 1.46904 * 111.00069 * 123.95637 * 2 1 3 5 5 C 1.52996 * 109.47382 * 76.92462 * 4 2 1 6 6 C 1.50705 * 115.55344 * 49.61294 * 5 4 2 7 7 O 1.21277 * 120.00162 * 144.05048 * 6 5 4 8 8 N 1.34777 * 119.99440 * 324.05845 * 6 5 4 9 9 C 1.46502 * 119.99487 * 184.75707 * 8 6 5 10 10 C 1.53002 * 109.47386 * 188.71787 * 9 8 6 11 11 H 1.08997 * 112.95127 * 57.84742 * 10 9 8 12 12 C 1.53934 * 113.76137 * 189.49518 * 10 9 8 13 13 C 1.53934 * 86.33854 * 138.04023 * 12 10 9 14 14 N 1.47958 * 113.75844 * 286.20402 * 10 9 8 15 15 C 1.46903 * 110.99849 * 108.09964 * 14 10 9 16 16 C 1.50698 * 109.47013 * 176.39977 * 15 14 10 17 17 O 1.21290 * 120.00354 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99784 * 179.97438 * 16 15 14 19 19 C 1.37095 * 119.99660 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00375 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99954 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99872 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00147 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46691 * 60.00551 * 23 21 19 25 25 H 1.48494 * 109.47152 * 180.02562 * 23 21 19 26 26 H 1.48491 * 109.47432 * 300.00356 * 23 21 19 27 27 C 1.53006 * 117.49471 * 263.90988 * 5 4 2 28 28 C 1.53003 * 117.49964 * 195.28923 * 5 4 2 29 29 H 1.08997 * 109.46790 * 299.21462 * 1 2 3 30 30 H 1.09000 * 109.47228 * 59.21792 * 1 2 3 31 31 H 1.09000 * 109.47070 * 179.21596 * 1 2 3 32 32 H 1.09004 * 109.47183 * 183.95096 * 3 2 1 33 33 H 1.09001 * 109.47079 * 303.95387 * 3 2 1 34 34 H 1.09003 * 109.46942 * 63.95491 * 3 2 1 35 35 H 1.08999 * 109.46956 * 316.91696 * 4 2 1 36 36 H 1.09007 * 109.46753 * 196.92432 * 4 2 1 37 37 H 0.96998 * 120.00725 * 4.75808 * 8 6 5 38 38 H 1.09003 * 109.47121 * 308.72331 * 9 8 6 39 39 H 1.09002 * 109.46998 * 68.72082 * 9 8 6 40 40 H 1.09003 * 113.73111 * 252.39880 * 12 10 9 41 41 H 1.08999 * 113.73273 * 23.57858 * 12 10 9 42 42 H 1.08995 * 113.76211 * 90.59901 * 13 12 10 43 43 H 1.09001 * 113.75904 * 221.85565 * 13 12 10 44 44 H 1.09005 * 109.47041 * 296.39812 * 15 14 10 45 45 H 1.09002 * 109.47463 * 56.39448 * 15 14 10 46 46 H 0.96996 * 120.00367 * 0.02562 * 18 16 15 47 47 H 0.96996 * 119.99848 * 179.97438 * 22 21 19 48 48 H 1.08991 * 117.49945 * 359.97438 * 27 5 4 49 49 H 1.09004 * 117.49549 * 145.02257 * 27 5 4 50 50 H 1.08998 * 117.49364 * 214.97551 * 28 5 4 51 51 H 1.09000 * 117.49737 * 359.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.8736 -2.2628 0.8447 6 6 2.4039 -2.7086 -0.4936 7 8 2.9542 -3.7841 -0.6002 8 7 2.2666 -1.9120 -1.5721 9 6 2.6875 -2.3876 -2.8923 10 6 2.6300 -1.2317 -3.8930 11 1 3.2491 -0.3840 -3.5994 12 6 2.8284 -1.6675 -5.3560 13 6 1.6904 -0.6891 -5.6984 14 7 1.2555 -0.8563 -4.2917 15 6 0.8696 0.4325 -3.7015 16 6 -0.4980 0.8235 -4.1991 17 8 -1.0927 0.1001 -4.9700 18 7 -1.0605 1.9771 -3.7875 19 6 -2.3045 2.3330 -4.2407 20 1 -2.8339 1.6889 -4.9271 21 6 -2.8841 3.5226 -3.8168 22 7 -2.2397 4.3067 -2.9820 23 14 -4.5794 4.0073 -4.4336 24 1 -5.5648 2.9682 -4.0407 25 1 -4.9692 5.3103 -3.8375 26 1 -4.5517 4.1290 -5.9133 27 6 0.6488 -2.9935 1.3989 28 6 2.0264 -3.2277 2.0222 29 1 -0.3633 0.5016 0.8969 30 1 -0.3634 0.5259 -0.8829 31 1 -0.3633 -1.0276 -0.0141 32 1 3.0828 1.3433 -0.0708 33 1 1.5897 1.9163 -0.8524 34 1 1.7043 1.8723 0.9233 35 1 1.4249 -0.5235 2.0341 36 1 3.0436 -0.5105 1.2937 37 1 1.8892 -1.0238 -1.4742 38 1 3.7077 -2.7670 -2.8335 39 1 2.0215 -3.1856 -3.2203 40 1 3.7941 -1.3802 -5.7722 41 1 2.5806 -2.7129 -5.5398 42 1 2.0333 0.3184 -5.9334 43 1 0.9816 -1.0784 -6.4293 44 1 0.8492 0.3431 -2.6153 45 1 1.5930 1.1953 -3.9897 46 1 -0.5849 2.5558 -3.1714 47 1 -2.6442 5.1373 -2.6864 48 1 -0.0697 -2.4081 1.9723 49 1 0.2264 -3.7969 0.7953 50 1 2.5101 -4.1851 1.8287 51 1 2.2141 -2.7963 3.0054 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499047554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:01 Heat of formation + Delta-G solvation = -18.341381 kcal Electronic energy + Delta-G solvation = -31534.029195 eV Core-core repulsion = 27469.875824 eV Total energy + Delta-G solvation = -4064.153371 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.56378 -40.90583 -39.51684 -38.57797 -36.89718 -35.92608 -35.20421 -33.29429 -31.91536 -29.86253 -28.64893 -28.43674 -27.48041 -25.27629 -25.11619 -23.60294 -23.32983 -22.62986 -21.08430 -20.98582 -20.13516 -19.87641 -17.98296 -17.73650 -17.33105 -16.95039 -16.64521 -16.51145 -16.27466 -16.03962 -15.81560 -15.73367 -15.47980 -15.43594 -15.03291 -14.89334 -14.59116 -14.12033 -13.71740 -13.50923 -13.42871 -13.30654 -13.04341 -12.94091 -12.90029 -12.87096 -12.65960 -12.58528 -12.42796 -12.40389 -12.31113 -12.13524 -11.84722 -11.72443 -11.47646 -11.39897 -11.08035 -10.69628 -10.31751 -9.98471 -9.85864 -9.62781 -9.49665 -8.44809 -5.92313 1.39240 1.41863 1.51502 1.61354 2.07206 2.28139 2.32718 2.72722 2.79474 3.03933 3.21735 3.32193 3.62358 3.72440 3.78521 3.84095 3.95097 3.99769 4.11618 4.20196 4.27942 4.31318 4.36049 4.38640 4.45630 4.52948 4.55455 4.58122 4.67379 4.70369 4.75133 4.78351 4.84890 4.87710 4.96528 4.97882 5.00866 5.06854 5.08812 5.21375 5.26673 5.41955 5.45424 5.72194 5.87662 5.93805 5.94534 6.13173 6.63118 6.88529 7.15575 7.50033 7.58293 8.15407 8.71941 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010963 B = 0.003760 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.535724 B = 7444.162792 C = 9118.756307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.556 5.556 3 C 0.017 3.983 4 C 0.095 3.905 5 C -0.168 4.168 6 C 0.543 3.457 7 O -0.600 6.600 8 N -0.707 5.707 9 C 0.137 3.863 10 C 0.023 3.977 11 H 0.100 0.900 12 C -0.116 4.116 13 C 0.007 3.993 14 N -0.473 5.473 15 C 0.024 3.976 16 C 0.443 3.557 17 O -0.618 6.618 18 N -0.570 5.570 19 C -0.332 4.332 20 H 0.074 0.926 21 C -0.006 4.006 22 N -0.916 5.916 23 Si 0.985 3.015 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.274 1.274 27 C -0.151 4.151 28 C -0.128 4.128 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.420 0.580 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.074 0.926 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.122 0.878 49 H 0.082 0.918 50 H 0.092 0.908 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.394 -5.613 10.350 17.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.280 5.280 3 C -0.130 4.130 4 C -0.033 4.033 5 C -0.172 4.172 6 C 0.330 3.670 7 O -0.483 6.483 8 N -0.370 5.370 9 C 0.012 3.988 10 C -0.086 4.086 11 H 0.118 0.882 12 C -0.154 4.154 13 C -0.122 4.122 14 N -0.196 5.196 15 C -0.108 4.108 16 C 0.230 3.770 17 O -0.504 6.504 18 N -0.207 5.207 19 C -0.461 4.461 20 H 0.093 0.907 21 C -0.206 4.206 22 N -0.556 5.556 23 Si 0.810 3.190 24 H -0.200 1.200 25 H -0.194 1.194 26 H -0.200 1.200 27 C -0.188 4.188 28 C -0.166 4.166 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.272 0.728 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.122 0.878 45 H 0.091 0.909 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.140 0.860 49 H 0.100 0.900 50 H 0.111 0.889 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.877 -7.190 9.555 17.572 hybrid contribution -0.861 1.939 0.301 2.143 sum 12.015 -5.251 9.855 16.403 Atomic orbital electron populations 1.22460 0.86818 1.02199 1.01274 1.61323 1.08497 1.15333 1.42890 1.22537 1.01406 0.87206 1.01860 1.21705 1.01697 0.87909 0.91949 1.21544 1.06815 0.95690 0.93105 1.19871 0.77884 0.83340 0.85880 1.90616 1.46052 1.24876 1.86735 1.46925 1.62825 1.21271 1.05976 1.21217 1.00014 0.95673 0.81914 1.23772 0.90400 0.98290 0.96139 0.88229 1.23260 0.99130 1.00423 0.92581 1.23794 0.97016 0.99557 0.91842 1.68464 1.21941 1.24695 1.04531 1.22396 0.93715 0.93160 1.01495 1.20683 0.89283 0.82244 0.84750 1.90498 1.66095 1.53787 1.40001 1.41854 1.16888 1.19340 1.42650 1.19554 0.94633 1.05244 1.26696 0.90747 1.25885 1.02908 0.95338 0.96507 1.69642 1.39893 1.13154 1.32958 0.85102 0.77801 0.77695 0.78447 1.19970 1.19420 1.19966 1.23120 0.91213 1.01910 1.02558 1.23047 0.98375 0.99293 0.95871 0.93554 0.92842 0.91537 0.89601 0.91555 0.93808 0.90946 0.88692 0.72790 0.90381 0.93312 0.87682 0.88806 0.90976 0.91342 0.87757 0.90858 0.77090 0.91370 0.85976 0.89958 0.88934 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 8.97 127.69 1.15 1.62 16 2 N -0.56 -10.83 1.50 -948.83 -1.42 -12.25 16 3 C 0.02 0.29 9.51 127.69 1.21 1.50 16 4 C 0.09 1.56 4.96 86.30 0.43 1.98 16 5 C -0.17 -3.53 1.93 -52.92 -0.10 -3.63 16 6 C 0.54 15.64 7.37 87.66 0.65 16.29 16 7 O -0.60 -21.24 16.18 -3.02 -0.05 -21.29 16 8 N -0.71 -19.24 5.46 -463.04 -2.53 -21.77 16 9 C 0.14 3.64 5.78 86.38 0.50 4.14 16 10 C 0.02 0.56 3.35 45.02 0.15 0.71 16 11 H 0.10 2.06 7.89 -2.39 -0.02 2.04 16 12 C -0.12 -2.47 7.86 31.24 0.25 -2.23 16 13 C 0.01 0.19 7.21 86.36 0.62 0.82 16 14 N -0.47 -15.37 5.64 -885.20 -4.99 -20.36 16 15 C 0.02 0.82 5.22 85.56 0.45 1.27 16 16 C 0.44 20.86 7.66 87.66 0.67 21.54 16 17 O -0.62 -34.47 15.50 -3.06 -0.05 -34.52 16 18 N -0.57 -28.30 5.29 -306.98 -1.62 -29.92 16 19 C -0.33 -18.45 9.68 84.04 0.81 -17.64 16 20 H 0.07 4.47 7.16 -2.91 -0.02 4.45 16 21 C -0.01 -0.32 5.50 84.93 0.47 0.15 16 22 N -0.92 -47.41 13.05 21.66 0.28 -47.13 16 23 Si 0.99 42.18 29.55 68.60 2.03 44.21 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 27 C -0.15 -2.86 8.86 30.60 0.27 -2.59 16 28 C -0.13 -2.24 9.76 30.60 0.30 -1.94 16 29 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 30 H 0.05 1.54 7.20 -2.39 -0.02 1.52 16 31 H 0.07 1.61 6.71 -2.39 -0.02 1.60 16 32 H 0.09 1.17 8.06 -2.38 -0.02 1.15 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.95 7.89 -2.39 -0.02 0.93 16 36 H 0.09 1.34 7.87 -2.38 -0.02 1.33 16 37 H 0.42 10.80 3.52 -92.71 -0.33 10.47 16 38 H 0.08 1.96 8.02 -2.39 -0.02 1.94 16 39 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.09 2.01 8.10 -2.39 -0.02 1.99 16 42 H 0.07 2.00 7.68 -2.39 -0.02 1.98 16 43 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.10 3.28 5.44 -2.38 -0.01 3.27 16 45 H 0.07 2.18 7.68 -2.39 -0.02 2.16 16 46 H 0.40 18.42 7.90 -92.71 -0.73 17.69 16 47 H 0.28 13.50 8.31 -92.71 -0.77 12.73 16 48 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.09 1.96 7.67 -2.39 -0.02 1.94 16 51 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -71.99 407.46 -0.65 -72.64 By element: Atomic # 1 Polarization: 48.50 SS G_CDS: -0.12 Total: 48.38 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 7.82 Total: 22.00 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -10.28 Total: -131.43 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: -0.10 Total: -55.81 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -71.99 -0.65 -72.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499047554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.303 kcal (2) G-P(sol) polarization free energy of solvation -71.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds