Wall clock time and date at job start Tue Mar 31 2020 20:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46905 * 111.00296 * 2 1 4 4 C 1.46903 * 110.99979 * 123.95030 * 2 1 3 5 5 C 1.53000 * 109.47180 * 155.77815 * 4 2 1 6 6 C 1.50707 * 115.54841 * 292.38607 * 5 4 2 7 7 O 1.21280 * 119.99705 * 261.50277 * 6 5 4 8 8 N 1.34771 * 119.99769 * 81.50188 * 6 5 4 9 9 C 1.46504 * 119.99570 * 183.65388 * 8 6 5 10 10 C 1.52999 * 109.47003 * 187.41222 * 9 8 6 11 11 H 1.08997 * 112.79472 * 297.22888 * 10 9 8 12 12 C 1.53515 * 113.47859 * 166.41360 * 10 9 8 13 13 C 1.53504 * 83.57830 * 219.21494 * 12 10 9 14 14 N 1.47482 * 87.93509 * 26.02410 * 13 12 10 15 15 C 1.46901 * 111.00190 * 221.29853 * 14 13 12 16 16 C 1.50702 * 109.46938 * 290.52728 * 15 14 13 17 17 O 1.21294 * 119.99975 * 354.05805 * 16 15 14 18 18 N 1.34780 * 119.99965 * 174.06281 * 16 15 14 19 19 C 1.37092 * 119.99921 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00362 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00066 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99283 * 359.72101 * 21 19 18 23 23 Si 1.86796 * 120.00233 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47294 * 89.99782 * 23 21 19 25 25 H 1.48494 * 109.46954 * 209.99861 * 23 21 19 26 26 H 1.48497 * 109.46799 * 329.99950 * 23 21 19 27 27 C 1.52993 * 117.51815 * 78.08853 * 5 4 2 28 28 C 1.52996 * 60.00160 * 107.47661 * 27 5 4 29 29 H 1.09001 * 109.47276 * 300.86611 * 1 2 3 30 30 H 1.09011 * 109.46731 * 60.85711 * 1 2 3 31 31 H 1.08997 * 109.47316 * 180.85640 * 1 2 3 32 32 H 1.08998 * 109.47226 * 193.99271 * 3 2 1 33 33 H 1.09000 * 109.46800 * 313.99300 * 3 2 1 34 34 H 1.09000 * 109.46742 * 73.98845 * 3 2 1 35 35 H 1.09002 * 109.46788 * 35.77559 * 4 2 1 36 36 H 1.08994 * 109.46966 * 275.78320 * 4 2 1 37 37 H 0.96999 * 120.00400 * 3.65631 * 8 6 5 38 38 H 1.09002 * 109.47087 * 67.41914 * 9 8 6 39 39 H 1.08998 * 109.47373 * 307.41641 * 9 8 6 40 40 H 1.08997 * 114.16962 * 105.56089 * 12 10 9 41 41 H 1.09004 * 114.16474 * 332.86118 * 12 10 9 42 42 H 1.09009 * 113.47679 * 271.25842 * 13 12 10 43 43 H 1.09001 * 113.53299 * 140.80278 * 13 12 10 44 44 H 1.08998 * 109.47062 * 170.52683 * 15 14 13 45 45 H 1.09007 * 109.47183 * 50.52483 * 15 14 13 46 46 H 0.97000 * 119.99974 * 359.97438 * 18 16 15 47 47 H 0.97006 * 119.99406 * 179.97438 * 22 21 19 48 48 H 1.08998 * 117.49990 * 214.97287 * 27 5 4 49 49 H 1.09010 * 117.49834 * 359.97438 * 27 5 4 50 50 H 1.08995 * 117.50235 * 252.50334 * 28 27 5 51 51 H 1.09001 * 117.49570 * 107.48416 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 3.4064 -1.2595 0.8110 6 6 3.4962 -2.2962 -0.2791 7 8 3.5869 -3.4711 0.0074 8 7 3.4756 -1.9175 -1.5724 9 6 3.4821 -2.9292 -2.6320 10 6 3.6416 -2.2438 -3.9905 11 1 2.8123 -1.5774 -4.2272 12 6 3.9902 -3.2141 -5.1279 13 6 4.9081 -2.0731 -5.5883 14 7 4.9663 -1.6250 -4.1844 15 6 4.8816 -0.1611 -4.0951 16 6 6.1463 0.4494 -4.6419 17 8 7.0735 -0.2630 -4.9642 18 7 6.2470 1.7871 -4.7727 19 6 7.3976 2.3425 -5.2696 20 1 8.2232 1.7083 -5.5567 21 6 7.5012 3.7216 -5.4050 22 7 6.4941 4.4929 -5.0617 23 14 9.0687 4.4784 -6.0828 24 1 8.9658 4.5905 -7.5600 25 1 9.2602 5.8290 -5.4960 26 1 10.2263 3.6173 -5.7313 27 6 4.5516 -0.2512 0.9232 28 6 4.4043 -1.3608 1.9663 29 1 -0.3634 0.5272 0.8821 30 1 -0.3633 0.5005 -0.8977 31 1 -0.3634 -1.0275 0.0154 32 1 3.0567 1.3533 -0.2485 33 1 1.4594 1.9664 -0.7393 34 1 1.8611 1.8122 0.9878 35 1 1.3472 -1.6206 1.3313 36 1 2.0290 -0.1280 2.0208 37 1 3.4566 -0.9752 -1.8016 38 1 2.5430 -3.4822 -2.6121 39 1 4.3124 -3.6172 -2.4724 40 1 3.1627 -3.4226 -5.8060 41 1 4.5200 -4.1099 -4.8037 42 1 4.4166 -1.3610 -6.2514 43 1 5.8679 -2.4157 -5.9749 44 1 4.7575 0.1327 -3.0528 45 1 4.0283 0.1896 -4.6756 46 1 5.5053 2.3568 -4.5152 47 1 6.5666 5.4556 -5.1558 48 1 5.3700 -0.3376 0.2086 49 1 4.2999 0.7643 1.2294 50 1 4.0560 -1.0754 2.9589 51 1 5.1259 -2.1772 1.9378 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499047555.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:05 Heat of formation + Delta-G solvation = 1.078942 kcal Electronic energy + Delta-G solvation = -30715.707150 eV Core-core repulsion = 26652.395907 eV Total energy + Delta-G solvation = -4063.311243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.52941 -39.88236 -37.89853 -37.63672 -35.83291 -34.37663 -33.90795 -31.37915 -30.60068 -28.67380 -28.03531 -27.78886 -25.80194 -24.03827 -23.72959 -22.74389 -22.41338 -21.81153 -20.00111 -19.32128 -19.07466 -17.91991 -17.11757 -16.19408 -16.10554 -15.81146 -15.63323 -15.44698 -15.23947 -14.92219 -14.63202 -14.46763 -14.34897 -13.96685 -13.78992 -13.74531 -13.24963 -12.81100 -12.69833 -12.51202 -12.26230 -12.15385 -12.04178 -11.97614 -11.78049 -11.68623 -11.57645 -11.49555 -11.33905 -11.08969 -10.76387 -10.60704 -10.54209 -10.41265 -10.27125 -10.23522 -9.61139 -9.52089 -8.85953 -8.69433 -8.64578 -8.27387 -7.98494 -6.44286 -3.84776 2.74087 3.12442 3.15864 3.24819 3.30889 3.42949 3.85682 3.87676 4.00944 4.21538 4.48993 4.52251 4.63921 4.70487 4.77974 4.86142 4.94141 4.98802 5.06412 5.11159 5.21673 5.22182 5.27032 5.39960 5.42011 5.46780 5.47923 5.50353 5.55884 5.61325 5.63707 5.68323 5.76640 5.78560 5.80847 5.89803 5.96945 5.97712 6.10959 6.25858 6.31579 6.56100 6.64330 6.69957 6.73114 7.24847 7.52968 7.68221 8.03460 8.38723 8.59097 9.15929 9.51553 10.03584 10.73423 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010038 B = 0.003278 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.699016 B = 8540.794100 C = 9917.562073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.017 3.983 4 C 0.100 3.900 5 C -0.149 4.149 6 C 0.561 3.439 7 O -0.551 6.551 8 N -0.705 5.705 9 C 0.141 3.859 10 C 0.007 3.993 11 H 0.081 0.919 12 C -0.136 4.136 13 C 0.012 3.988 14 N -0.435 5.435 15 C 0.011 3.989 16 C 0.443 3.557 17 O -0.576 6.576 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C -0.163 4.163 28 C -0.144 4.144 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.027 0.973 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.404 0.596 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.053 0.947 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.103 0.897 49 H 0.103 0.897 50 H 0.101 0.899 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.410 -7.499 10.103 19.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.268 5.268 3 C -0.131 4.131 4 C -0.029 4.029 5 C -0.152 4.152 6 C 0.346 3.654 7 O -0.429 6.429 8 N -0.355 5.355 9 C 0.016 3.984 10 C -0.104 4.104 11 H 0.099 0.901 12 C -0.175 4.175 13 C -0.116 4.116 14 N -0.157 5.157 15 C -0.121 4.121 16 C 0.228 3.772 17 O -0.460 6.460 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.200 4.200 28 C -0.182 4.182 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.239 0.761 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.083 0.917 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.072 0.928 46 H 0.224 0.776 47 H 0.081 0.919 48 H 0.122 0.878 49 H 0.121 0.879 50 H 0.119 0.881 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.019 -8.977 10.060 18.743 hybrid contribution -0.741 2.300 -0.037 2.416 sum -13.760 -6.677 10.023 18.286 Atomic orbital electron populations 1.22406 0.87033 1.01997 1.00796 1.61839 1.07841 1.14228 1.42877 1.22600 1.01920 0.88213 1.00328 1.21540 0.92484 0.97512 0.91326 1.21366 0.93242 1.01042 0.99580 1.19228 0.75206 0.88117 0.82807 1.90673 1.50357 1.18662 1.83203 1.45762 1.73973 1.10663 1.05082 1.21299 1.01769 0.90879 0.84409 1.23780 0.93658 0.97764 0.95149 0.90096 1.23172 0.99749 0.97844 0.96711 1.23567 1.00814 0.95862 0.91400 1.68902 1.22890 1.07332 1.16609 1.22496 0.97615 0.90321 1.01710 1.19662 0.89136 0.83138 0.85237 1.90537 1.40327 1.60737 1.54383 1.41861 1.16803 1.04790 1.56639 1.19692 0.94139 0.90500 1.38461 0.87978 1.25239 0.98806 0.96106 0.97684 1.69612 1.31097 1.05307 1.48333 0.85875 0.81501 0.78206 0.78847 1.20431 1.20914 1.19397 1.23188 0.99090 0.95165 1.02586 1.22987 1.00292 1.01232 0.93654 0.95717 0.91078 0.91488 0.90501 0.91190 0.95454 0.90241 0.93222 0.76115 0.91700 0.90465 0.90609 0.88697 0.91682 0.88957 0.89593 0.92848 0.77567 0.91910 0.87814 0.87903 0.88092 0.87888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.48 60.06 0.57 0.76 16 2 N -0.54 -4.86 4.87 -251.25 -1.22 -6.08 16 3 C 0.02 0.15 9.04 60.07 0.54 0.69 16 4 C 0.10 0.91 4.93 -3.82 -0.02 0.90 16 5 C -0.15 -1.62 1.99 -155.66 -0.31 -1.93 16 6 C 0.56 7.84 6.93 -10.98 -0.08 7.76 16 7 O -0.55 -9.61 16.96 5.56 0.09 -9.51 16 8 N -0.70 -9.02 5.55 -60.29 -0.33 -9.35 16 9 C 0.14 1.77 5.74 -4.04 -0.02 1.75 16 10 C 0.01 0.08 3.11 -71.43 -0.22 -0.14 16 11 H 0.08 0.90 7.69 -51.93 -0.40 0.50 16 12 C -0.14 -1.55 8.01 -26.20 -0.21 -1.76 16 13 C 0.01 0.19 6.55 -7.55 -0.05 0.14 16 14 N -0.43 -7.01 5.90 -237.92 -1.40 -8.42 16 15 C 0.01 0.18 5.28 -4.97 -0.03 0.16 16 16 C 0.44 10.28 7.51 -10.98 -0.08 10.19 16 17 O -0.58 -15.53 15.25 5.55 0.08 -15.45 16 18 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 19 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 22 N -0.90 -24.03 13.05 55.50 0.72 -23.30 16 23 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 27 C -0.16 -1.66 8.61 -26.74 -0.23 -1.89 16 28 C -0.14 -1.44 9.85 -26.73 -0.26 -1.71 16 29 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.50 8.11 -51.92 -0.42 0.08 16 31 H 0.07 0.50 7.94 -51.93 -0.41 0.08 16 32 H 0.08 0.70 6.14 -51.93 -0.32 0.38 16 33 H 0.07 0.57 8.00 -51.93 -0.42 0.15 16 34 H 0.03 0.21 7.82 -51.93 -0.41 -0.20 16 35 H 0.08 0.75 7.74 -51.93 -0.40 0.35 16 36 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 37 H 0.40 4.93 7.34 -40.82 -0.30 4.63 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.12 8.05 -51.93 -0.42 0.70 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 42 H 0.06 0.97 7.78 -51.92 -0.40 0.56 16 43 H 0.09 1.58 8.09 -51.93 -0.42 1.16 16 44 H 0.09 1.35 7.12 -51.93 -0.37 0.98 16 45 H 0.05 0.82 7.56 -51.93 -0.39 0.42 16 46 H 0.39 9.22 7.90 -40.82 -0.32 8.89 16 47 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 48 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.10 0.90 7.02 -51.92 -0.36 0.54 16 50 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 414.32 15.07 6.24 6.24 Total: -1.00 -32.85 414.32 -10.17 -43.02 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -8.63 Total: 13.99 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -0.64 Total: 7.08 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -2.29 Total: -61.18 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: 0.18 Total: -24.96 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.85 -10.17 -43.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499047555.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.095 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds