Wall clock time and date at job start Tue Mar 31 2020 20:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46905 * 111.00296 * 2 1 4 4 C 1.46903 * 110.99979 * 123.95030 * 2 1 3 5 5 C 1.53000 * 109.47180 * 155.77815 * 4 2 1 6 6 C 1.50707 * 115.54841 * 292.38607 * 5 4 2 7 7 O 1.21280 * 119.99705 * 261.50277 * 6 5 4 8 8 N 1.34771 * 119.99769 * 81.50188 * 6 5 4 9 9 C 1.46504 * 119.99570 * 183.65388 * 8 6 5 10 10 C 1.52999 * 109.47003 * 187.41222 * 9 8 6 11 11 H 1.08997 * 112.79472 * 297.22888 * 10 9 8 12 12 C 1.53515 * 113.47859 * 166.41360 * 10 9 8 13 13 C 1.53504 * 83.57830 * 219.21494 * 12 10 9 14 14 N 1.47482 * 87.93509 * 26.02410 * 13 12 10 15 15 C 1.46901 * 111.00190 * 221.29853 * 14 13 12 16 16 C 1.50702 * 109.46938 * 290.52728 * 15 14 13 17 17 O 1.21294 * 119.99975 * 354.05805 * 16 15 14 18 18 N 1.34780 * 119.99965 * 174.06281 * 16 15 14 19 19 C 1.37092 * 119.99921 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00362 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00066 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99283 * 359.72101 * 21 19 18 23 23 Si 1.86796 * 120.00233 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47294 * 89.99782 * 23 21 19 25 25 H 1.48494 * 109.46954 * 209.99861 * 23 21 19 26 26 H 1.48497 * 109.46799 * 329.99950 * 23 21 19 27 27 C 1.52993 * 117.51815 * 78.08853 * 5 4 2 28 28 C 1.52996 * 60.00160 * 107.47661 * 27 5 4 29 29 H 1.09001 * 109.47276 * 300.86611 * 1 2 3 30 30 H 1.09011 * 109.46731 * 60.85711 * 1 2 3 31 31 H 1.08997 * 109.47316 * 180.85640 * 1 2 3 32 32 H 1.08998 * 109.47226 * 193.99271 * 3 2 1 33 33 H 1.09000 * 109.46800 * 313.99300 * 3 2 1 34 34 H 1.09000 * 109.46742 * 73.98845 * 3 2 1 35 35 H 1.09002 * 109.46788 * 35.77559 * 4 2 1 36 36 H 1.08994 * 109.46966 * 275.78320 * 4 2 1 37 37 H 0.96999 * 120.00400 * 3.65631 * 8 6 5 38 38 H 1.09002 * 109.47087 * 67.41914 * 9 8 6 39 39 H 1.08998 * 109.47373 * 307.41641 * 9 8 6 40 40 H 1.08997 * 114.16962 * 105.56089 * 12 10 9 41 41 H 1.09004 * 114.16474 * 332.86118 * 12 10 9 42 42 H 1.09009 * 113.47679 * 271.25842 * 13 12 10 43 43 H 1.09001 * 113.53299 * 140.80278 * 13 12 10 44 44 H 1.08998 * 109.47062 * 170.52683 * 15 14 13 45 45 H 1.09007 * 109.47183 * 50.52483 * 15 14 13 46 46 H 0.97000 * 119.99974 * 359.97438 * 18 16 15 47 47 H 0.97006 * 119.99406 * 179.97438 * 22 21 19 48 48 H 1.08998 * 117.49990 * 214.97287 * 27 5 4 49 49 H 1.09010 * 117.49834 * 359.97438 * 27 5 4 50 50 H 1.08995 * 117.50235 * 252.50334 * 28 27 5 51 51 H 1.09001 * 117.49570 * 107.48416 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 3.4064 -1.2595 0.8110 6 6 3.4962 -2.2962 -0.2791 7 8 3.5869 -3.4711 0.0074 8 7 3.4756 -1.9175 -1.5724 9 6 3.4821 -2.9292 -2.6320 10 6 3.6416 -2.2438 -3.9905 11 1 2.8123 -1.5774 -4.2272 12 6 3.9902 -3.2141 -5.1279 13 6 4.9081 -2.0731 -5.5883 14 7 4.9663 -1.6250 -4.1844 15 6 4.8816 -0.1611 -4.0951 16 6 6.1463 0.4494 -4.6419 17 8 7.0735 -0.2630 -4.9642 18 7 6.2470 1.7871 -4.7727 19 6 7.3976 2.3425 -5.2696 20 1 8.2232 1.7083 -5.5567 21 6 7.5012 3.7216 -5.4050 22 7 6.4941 4.4929 -5.0617 23 14 9.0687 4.4784 -6.0828 24 1 8.9658 4.5905 -7.5600 25 1 9.2602 5.8290 -5.4960 26 1 10.2263 3.6173 -5.7313 27 6 4.5516 -0.2512 0.9232 28 6 4.4043 -1.3608 1.9663 29 1 -0.3634 0.5272 0.8821 30 1 -0.3633 0.5005 -0.8977 31 1 -0.3634 -1.0275 0.0154 32 1 3.0567 1.3533 -0.2485 33 1 1.4594 1.9664 -0.7393 34 1 1.8611 1.8122 0.9878 35 1 1.3472 -1.6206 1.3313 36 1 2.0290 -0.1280 2.0208 37 1 3.4566 -0.9752 -1.8016 38 1 2.5430 -3.4822 -2.6121 39 1 4.3124 -3.6172 -2.4724 40 1 3.1627 -3.4226 -5.8060 41 1 4.5200 -4.1099 -4.8037 42 1 4.4166 -1.3610 -6.2514 43 1 5.8679 -2.4157 -5.9749 44 1 4.7575 0.1327 -3.0528 45 1 4.0283 0.1896 -4.6756 46 1 5.5053 2.3568 -4.5152 47 1 6.5666 5.4556 -5.1558 48 1 5.3700 -0.3376 0.2086 49 1 4.2999 0.7643 1.2294 50 1 4.0560 -1.0754 2.9589 51 1 5.1259 -2.1772 1.9378 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499047555.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:04 Heat of formation + Delta-G solvation = -25.809051 kcal Electronic energy + Delta-G solvation = -30716.873101 eV Core-core repulsion = 26652.395907 eV Total energy + Delta-G solvation = -4064.477193 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.67162 -40.95749 -39.56590 -38.64682 -36.60348 -35.96630 -35.44936 -33.32459 -32.00863 -29.66307 -28.83960 -28.38819 -27.53607 -25.34808 -25.03730 -23.58567 -23.22617 -22.67343 -21.09673 -21.05473 -20.13740 -19.88985 -18.04788 -17.77228 -17.29140 -16.91979 -16.63632 -16.51562 -16.35082 -16.08382 -15.94785 -15.69186 -15.50669 -15.38139 -15.05207 -14.93383 -14.44193 -14.09442 -13.74672 -13.54780 -13.41310 -13.35740 -13.03289 -12.91103 -12.87557 -12.78539 -12.68662 -12.64135 -12.44240 -12.36049 -12.30976 -12.13423 -11.89591 -11.72792 -11.49333 -11.37081 -11.13220 -10.67462 -10.32730 -10.00808 -9.93728 -9.75352 -9.27945 -8.46662 -5.94706 1.37043 1.41576 1.53603 1.67450 2.04409 2.18721 2.28661 2.61326 2.84331 3.13497 3.19895 3.27760 3.58154 3.71309 3.75882 3.83664 3.89940 3.98111 4.11189 4.19541 4.29196 4.31668 4.36391 4.44054 4.46829 4.53830 4.57278 4.61093 4.67899 4.69717 4.78868 4.81913 4.85931 4.87898 4.94932 4.95912 5.01795 5.07236 5.13278 5.18090 5.24188 5.38136 5.42036 5.55799 5.93241 6.05960 6.11824 6.12226 6.60863 6.63151 7.13450 7.32267 7.56167 8.12693 8.70514 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010038 B = 0.003278 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.699016 B = 8540.794100 C = 9917.562073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.555 5.555 3 C 0.018 3.982 4 C 0.106 3.894 5 C -0.152 4.152 6 C 0.555 3.445 7 O -0.592 6.592 8 N -0.699 5.699 9 C 0.143 3.857 10 C 0.020 3.980 11 H 0.105 0.895 12 C -0.115 4.115 13 C 0.003 3.997 14 N -0.465 5.465 15 C 0.026 3.974 16 C 0.440 3.560 17 O -0.620 6.620 18 N -0.570 5.570 19 C -0.333 4.333 20 H 0.075 0.925 21 C -0.008 4.008 22 N -0.917 5.917 23 Si 0.988 3.012 24 H -0.271 1.271 25 H -0.269 1.269 26 H -0.276 1.276 27 C -0.157 4.157 28 C -0.142 4.142 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.408 0.592 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.102 0.898 45 H 0.080 0.920 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.083 0.917 49 H 0.122 0.878 50 H 0.127 0.873 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.343 -6.513 10.548 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.279 5.279 3 C -0.130 4.130 4 C -0.023 4.023 5 C -0.155 4.155 6 C 0.342 3.658 7 O -0.473 6.473 8 N -0.348 5.348 9 C 0.018 3.982 10 C -0.090 4.090 11 H 0.122 0.878 12 C -0.153 4.153 13 C -0.126 4.126 14 N -0.188 5.188 15 C -0.106 4.106 16 C 0.227 3.773 17 O -0.506 6.506 18 N -0.208 5.208 19 C -0.463 4.463 20 H 0.093 0.907 21 C -0.208 4.208 22 N -0.557 5.557 23 Si 0.812 3.188 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.201 1.201 27 C -0.194 4.194 28 C -0.180 4.180 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.244 0.756 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.127 0.873 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.120 0.880 45 H 0.098 0.902 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.101 0.899 49 H 0.140 0.860 50 H 0.145 0.855 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.987 -7.963 10.499 19.956 hybrid contribution -0.125 1.948 -0.191 1.961 sum -15.112 -6.016 10.308 19.256 Atomic orbital electron populations 1.22409 0.86113 1.02138 1.01396 1.61808 1.08717 1.14480 1.42901 1.22584 1.01390 0.88060 1.00939 1.21495 0.91043 0.97701 0.92038 1.21373 0.94668 1.00526 0.98969 1.19777 0.74258 0.88193 0.83621 1.90648 1.52343 1.20510 1.83820 1.45775 1.73152 1.10889 1.04985 1.21287 1.01597 0.90678 0.84591 1.23793 0.92336 0.97727 0.95095 0.87760 1.23115 0.99508 0.96431 0.96250 1.23583 1.00276 0.97729 0.90975 1.68902 1.25990 1.06495 1.17443 1.22360 0.94743 0.90983 1.02465 1.20717 0.90553 0.82405 0.83626 1.90508 1.42575 1.61587 1.55882 1.41898 1.16327 1.05573 1.57001 1.19608 0.94837 0.91105 1.40743 0.90699 1.25945 1.01666 0.95876 0.97324 1.69660 1.32211 1.05775 1.48103 0.84999 0.77693 0.77601 0.78502 1.19668 1.19400 1.20078 1.23154 0.98037 0.96067 1.02132 1.23071 0.99604 1.00543 0.94792 0.94889 0.90677 0.91597 0.91351 0.90925 0.94569 0.90627 0.91526 0.75619 0.90119 0.92791 0.87264 0.88727 0.91351 0.92122 0.88000 0.90219 0.76944 0.91284 0.89854 0.86027 0.85487 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.48 127.69 1.21 1.56 16 2 N -0.56 -8.70 4.87 -948.82 -4.62 -13.31 16 3 C 0.02 0.26 9.04 127.69 1.15 1.42 16 4 C 0.11 1.72 4.93 86.30 0.43 2.15 16 5 C -0.15 -3.15 1.99 -52.93 -0.11 -3.26 16 6 C 0.55 15.30 6.93 87.66 0.61 15.91 16 7 O -0.59 -20.88 16.96 -3.03 -0.05 -20.93 16 8 N -0.70 -17.18 5.55 -463.05 -2.57 -19.75 16 9 C 0.14 3.41 5.74 86.38 0.50 3.91 16 10 C 0.02 0.44 3.11 42.19 0.13 0.57 16 11 H 0.10 1.92 7.69 -2.39 -0.02 1.90 16 12 C -0.11 -2.37 8.01 30.94 0.25 -2.12 16 13 C 0.00 0.10 6.55 83.57 0.55 0.65 16 14 N -0.47 -14.70 5.90 -906.65 -5.35 -20.04 16 15 C 0.03 0.87 5.28 85.56 0.45 1.32 16 16 C 0.44 20.71 7.51 87.66 0.66 21.37 16 17 O -0.62 -34.61 15.25 -3.07 -0.05 -34.66 16 18 N -0.57 -28.67 5.29 -306.98 -1.62 -30.30 16 19 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 20 H 0.07 4.55 7.16 -2.91 -0.02 4.53 16 21 C -0.01 -0.42 5.50 84.93 0.47 0.05 16 22 N -0.92 -48.17 13.05 21.67 0.28 -47.89 16 23 Si 0.99 42.50 29.55 68.60 2.03 44.52 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 26 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 27 C -0.16 -3.03 8.61 30.59 0.26 -2.77 16 28 C -0.14 -2.72 9.85 30.59 0.30 -2.42 16 29 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.07 0.89 8.11 -2.38 -0.02 0.87 16 31 H 0.07 0.85 7.94 -2.39 -0.02 0.83 16 32 H 0.07 1.11 6.14 -2.39 -0.01 1.09 16 33 H 0.07 1.01 8.00 -2.39 -0.02 0.99 16 34 H 0.04 0.46 7.82 -2.39 -0.02 0.44 16 35 H 0.08 1.30 7.74 -2.39 -0.02 1.28 16 36 H 0.07 0.88 7.65 -2.39 -0.02 0.86 16 37 H 0.41 9.33 7.34 -92.71 -0.68 8.65 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.05 1.57 8.05 -2.39 -0.02 1.55 16 40 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.09 1.99 8.11 -2.39 -0.02 1.97 16 42 H 0.07 1.96 7.78 -2.38 -0.02 1.94 16 43 H 0.06 2.16 8.09 -2.39 -0.02 2.14 16 44 H 0.10 3.06 7.12 -2.39 -0.02 3.04 16 45 H 0.08 2.25 7.56 -2.38 -0.02 2.23 16 46 H 0.40 18.71 7.90 -92.71 -0.73 17.98 16 47 H 0.28 13.66 8.31 -92.70 -0.77 12.89 16 48 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.12 1.89 7.02 -2.38 -0.02 1.87 16 50 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -73.15 414.32 -4.75 -77.89 By element: Atomic # 1 Polarization: 44.54 SS G_CDS: -0.47 Total: 44.06 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 7.67 Total: 20.39 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -13.87 Total: -131.29 kcal Atomic # 8 Polarization: -55.49 SS G_CDS: -0.10 Total: -55.59 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -73.15 -4.75 -77.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499047555.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.086 kcal (2) G-P(sol) polarization free energy of solvation -73.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds