Wall clock time and date at job start Tue Mar 31 2020 21:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27760 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.27769 * 3 2 1 6 6 H 1.48492 * 109.47124 * 120.27784 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.50041 * 300.00122 * 10 9 7 12 12 O 1.42908 * 109.46749 * 59.99919 * 11 10 9 13 13 C 1.53042 * 109.49433 * 60.06738 * 10 9 7 14 14 C 1.53103 * 109.50469 * 58.62143 * 13 10 9 15 15 C 1.53194 * 109.33643 * 61.33744 * 14 13 10 16 16 N 1.46932 * 108.77197 * 305.36933 * 15 14 13 17 17 C 1.34777 * 120.62586 * 233.62510 * 16 15 14 18 18 O 1.21280 * 119.99554 * 179.97438 * 17 16 15 19 19 C 1.50699 * 120.00219 * 359.97438 * 17 16 15 20 20 C 1.53005 * 109.46993 * 179.97438 * 19 17 16 21 21 C 1.53001 * 109.46718 * 180.02562 * 20 19 17 22 22 C 1.53004 * 109.47140 * 294.99937 * 21 20 19 23 23 C 1.52998 * 109.46741 * 180.02562 * 22 21 20 24 24 C 1.52996 * 109.47724 * 60.00263 * 23 22 21 25 25 C 1.53008 * 109.46798 * 300.00048 * 24 23 22 26 26 C 1.52994 * 109.46976 * 59.99879 * 25 24 23 27 27 C 1.46928 * 118.73898 * 53.60660 * 16 15 14 28 28 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 29 29 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 30 30 H 1.08991 * 109.46846 * 180.02562 * 11 10 9 31 31 H 1.09001 * 109.47011 * 300.00358 * 11 10 9 32 32 H 0.96699 * 113.99169 * 180.02562 * 12 11 10 33 33 H 1.09004 * 109.45877 * 178.60177 * 13 10 9 34 34 H 1.08990 * 109.46086 * 298.56091 * 13 10 9 35 35 H 1.09005 * 109.48890 * 301.38198 * 14 13 10 36 36 H 1.09002 * 109.51901 * 181.31545 * 14 13 10 37 37 H 1.08992 * 109.59257 * 185.58167 * 15 14 13 38 38 H 1.09004 * 109.58465 * 65.14922 * 15 14 13 39 39 H 1.08994 * 109.47457 * 300.00031 * 19 17 16 40 40 H 1.09007 * 109.46752 * 60.00235 * 19 17 16 41 41 H 1.08994 * 109.47245 * 300.00406 * 20 19 17 42 42 H 1.09001 * 109.46615 * 60.00413 * 20 19 17 43 43 H 1.08991 * 109.47416 * 55.00337 * 21 20 19 44 44 H 1.08998 * 109.47314 * 300.00053 * 22 21 20 45 45 H 1.08996 * 109.46557 * 60.00391 * 22 21 20 46 46 H 1.09003 * 109.47205 * 299.99590 * 23 22 21 47 47 H 1.09009 * 109.46877 * 180.02562 * 23 22 21 48 48 H 1.08998 * 109.47129 * 180.02562 * 24 23 22 49 49 H 1.08997 * 109.46994 * 59.99171 * 24 23 22 50 50 H 1.08997 * 109.46632 * 299.99345 * 25 24 23 51 51 H 1.08996 * 109.46559 * 179.97438 * 25 24 23 52 52 H 1.09007 * 109.46624 * 180.02562 * 26 25 24 53 53 H 1.08991 * 109.47491 * 60.00000 * 26 25 24 54 54 H 1.09003 * 109.58344 * 186.60011 * 27 16 15 55 55 H 1.09000 * 109.58885 * 66.17737 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6993 -1.2159 5 1 1.2853 2.7465 0.0068 6 1 3.1090 1.6934 1.2090 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 2.9330 -3.7358 -1.2641 12 8 3.8619 -2.6498 -1.2654 13 6 2.9416 -3.7420 1.2351 14 6 2.0694 -3.6301 2.4885 15 6 1.0745 -4.7946 2.5197 16 7 0.3201 -4.8059 1.2589 17 6 -1.0276 -4.8017 1.2651 18 8 -1.6388 -4.8107 0.2176 19 6 -1.7751 -4.7857 2.5735 20 6 -3.2806 -4.7832 2.3008 21 6 -4.0395 -4.7664 3.6293 22 6 -3.7677 -6.0667 4.3884 23 6 -4.5271 -6.0501 5.7165 24 6 -6.0273 -5.9222 5.4448 25 6 -6.2990 -4.6218 4.6856 26 6 -5.5397 -4.6386 3.3575 27 6 1.0630 -4.8216 -0.0087 28 1 -0.4850 0.8400 0.0040 29 1 0.3555 -2.3880 -0.0021 30 1 3.4773 -4.6800 -1.2680 31 1 2.3031 -3.6762 -2.1517 32 1 4.4501 -2.6364 -2.0328 33 1 3.4674 -4.6968 1.2430 34 1 3.6667 -2.9284 1.2225 35 1 1.5243 -2.6863 2.4692 36 1 2.7010 -3.6673 3.3761 37 1 0.3871 -4.6656 3.3556 38 1 1.6154 -5.7344 2.6303 39 1 -1.5120 -5.6705 3.1532 40 1 -1.5063 -3.8906 3.1346 41 1 -3.5434 -3.8983 1.7213 42 1 -3.5496 -5.6781 1.7396 43 1 -3.7049 -3.9194 4.2281 44 1 -4.1024 -6.9138 3.7895 45 1 -2.6989 -6.1580 4.5816 46 1 -4.1928 -5.2030 6.3156 47 1 -4.3332 -6.9763 6.2576 48 1 -6.5682 -5.9099 6.3910 49 1 -6.3615 -6.7692 4.8457 50 1 -5.9648 -3.7748 5.2847 51 1 -7.3677 -4.5310 4.4917 52 1 -5.7330 -3.7119 2.8168 53 1 -5.8740 -5.4856 2.7585 54 1 0.3678 -4.7105 -0.8409 55 1 1.6029 -5.7637 -0.1042 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502597486.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:31 Heat of formation + Delta-G solvation = -124.621859 kcal Electronic energy + Delta-G solvation = -31586.340414 eV Core-core repulsion = 27621.118719 eV Total energy + Delta-G solvation = -3965.221695 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.36948 -39.80452 -39.10165 -37.11881 -35.55168 -34.80744 -33.70287 -32.66316 -31.61449 -30.87954 -30.04073 -26.89462 -26.57526 -25.62188 -24.67993 -23.37982 -23.03352 -21.76313 -20.58664 -20.42236 -19.57135 -19.14663 -18.06753 -17.91137 -16.85873 -16.76920 -16.46495 -16.07631 -15.80994 -15.56379 -15.37682 -15.05543 -14.98809 -14.83267 -14.71574 -14.58171 -14.28765 -14.04613 -13.62854 -13.46131 -13.37049 -13.27327 -12.94092 -12.84136 -12.75576 -12.67225 -12.63414 -12.42047 -12.06062 -12.00539 -11.93912 -11.78063 -11.68338 -11.62819 -11.48857 -11.30725 -11.26731 -10.91511 -10.79108 -10.75542 -10.61202 -10.54663 -9.48425 -8.86820 -7.77717 -5.03108 1.45766 1.48650 1.54447 1.71737 2.14107 2.64819 3.43559 3.56141 3.69370 3.77631 3.79871 3.84998 3.98476 4.02187 4.15638 4.19222 4.23145 4.29178 4.41771 4.42803 4.47430 4.50806 4.56659 4.60430 4.61230 4.66756 4.68317 4.70507 4.71820 4.80381 4.83260 4.86497 4.94647 5.01283 5.03325 5.06118 5.14454 5.20364 5.26786 5.32016 5.34363 5.39189 5.40175 5.46365 5.55681 5.59085 5.64746 5.67677 5.72095 5.91181 6.43777 6.54506 7.13478 7.29442 7.50238 8.22435 8.45917 9.46289 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013259 B = 0.003031 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.213848 B = 9235.014522 C =10337.776585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.096 4.096 3 Si 0.961 3.039 4 H -0.286 1.286 5 H -0.307 1.307 6 H -0.281 1.281 7 C -0.180 4.180 8 H 0.094 0.906 9 N -0.715 5.715 10 C 0.175 3.825 11 C 0.076 3.924 12 O -0.566 6.566 13 C -0.109 4.109 14 C -0.127 4.127 15 C 0.111 3.889 16 N -0.601 5.601 17 C 0.504 3.496 18 O -0.593 6.593 19 C -0.127 4.127 20 C -0.092 4.092 21 C -0.080 4.080 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.118 4.118 26 C -0.117 4.117 27 C 0.119 3.881 28 H 0.239 0.761 29 H 0.363 0.637 30 H 0.069 0.931 31 H 0.020 0.980 32 H 0.376 0.624 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.036 0.964 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.126 0.874 40 H 0.094 0.906 41 H 0.035 0.965 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.061 0.939 50 H 0.059 0.941 51 H 0.064 0.936 52 H 0.048 0.952 53 H 0.060 0.940 54 H 0.059 0.941 55 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.340 -18.389 12.212 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.286 4.286 3 Si 0.793 3.207 4 H -0.213 1.213 5 H -0.234 1.234 6 H -0.208 1.208 7 C -0.312 4.312 8 H 0.112 0.888 9 N -0.354 5.354 10 C 0.084 3.916 11 C -0.005 4.005 12 O -0.372 6.372 13 C -0.148 4.148 14 C -0.165 4.165 15 C -0.010 4.010 16 N -0.333 5.333 17 C 0.295 3.705 18 O -0.475 6.475 19 C -0.166 4.166 20 C -0.130 4.130 21 C -0.099 4.099 22 C -0.150 4.150 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.155 4.155 26 C -0.155 4.155 27 C -0.005 4.005 28 H 0.048 0.952 29 H 0.195 0.805 30 H 0.087 0.913 31 H 0.038 0.962 32 H 0.223 0.777 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.144 0.856 40 H 0.113 0.887 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.087 0.913 49 H 0.079 0.921 50 H 0.078 0.922 51 H 0.082 0.918 52 H 0.067 0.933 53 H 0.079 0.921 54 H 0.077 0.923 55 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.798 -18.149 12.238 22.068 hybrid contribution 0.138 1.690 -1.320 2.149 sum -2.660 -16.459 10.918 19.929 Atomic orbital electron populations 1.69867 1.06462 1.24784 1.62548 1.25431 0.96029 1.00536 1.06595 0.85358 0.76945 0.80581 0.77813 1.21279 1.23391 1.20813 1.19779 0.91956 0.84079 1.35372 0.88835 1.42573 1.04574 1.00680 1.87543 1.20391 0.91142 0.86015 0.94035 1.22627 0.91040 0.89137 0.97646 1.86724 1.51007 1.50615 1.48830 1.21752 0.97519 1.01170 0.94403 1.21769 0.98024 0.98327 0.98379 1.21998 0.94834 0.99387 0.84789 1.48052 1.05266 1.72103 1.07863 1.21411 0.82263 0.74554 0.92309 1.90652 1.68369 1.52348 1.36087 1.21734 0.95525 1.05544 0.93830 1.21295 0.92818 1.01434 0.97482 1.21124 0.94771 0.99136 0.94837 1.21638 1.00838 0.96349 0.96224 1.21538 0.94951 1.02204 0.96876 1.21541 0.96592 0.97284 1.00178 1.21524 0.99772 0.98421 0.95815 1.21580 0.94814 1.01268 0.97801 1.21593 0.94014 0.98024 0.86835 0.95208 0.80527 0.91333 0.96153 0.77671 0.90169 0.93596 0.94510 0.89350 0.88183 0.88141 0.85574 0.88743 0.94600 0.92173 0.91377 0.92053 0.90754 0.92037 0.90977 0.91339 0.92064 0.92219 0.91765 0.93345 0.92127 0.92289 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.83 13.06 21.65 0.28 -63.55 16 2 C -0.10 -5.78 5.50 84.86 0.47 -5.31 16 3 Si 0.96 49.16 29.55 68.60 2.03 51.19 16 4 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 5 H -0.31 -16.08 7.11 99.48 0.71 -15.37 16 6 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 7 C -0.18 -10.01 8.29 84.03 0.70 -9.31 16 8 H 0.09 5.13 5.30 -2.91 -0.02 5.11 16 9 N -0.72 -36.11 4.22 -302.98 -1.28 -37.38 16 10 C 0.18 6.54 0.68 3.68 0.00 6.54 16 11 C 0.08 2.57 6.08 71.98 0.44 3.00 16 12 O -0.57 -20.58 9.96 -148.98 -1.48 -22.06 16 13 C -0.11 -3.51 4.39 30.64 0.13 -3.38 16 14 C -0.13 -3.78 5.93 30.69 0.18 -3.60 16 15 C 0.11 2.59 6.34 86.36 0.55 3.13 16 16 N -0.60 -18.76 2.87 -818.89 -2.35 -21.10 16 17 C 0.50 17.62 7.70 87.66 0.67 18.29 16 18 O -0.59 -26.40 15.39 -3.03 -0.05 -26.44 16 19 C -0.13 -3.24 3.80 29.85 0.11 -3.12 16 20 C -0.09 -2.47 3.97 30.60 0.12 -2.35 16 21 C -0.08 -1.64 2.19 -10.79 -0.02 -1.67 16 22 C -0.11 -1.78 4.96 30.59 0.15 -1.63 16 23 C -0.12 -1.61 5.92 30.59 0.18 -1.42 16 24 C -0.12 -1.65 5.92 30.60 0.18 -1.47 16 25 C -0.12 -1.95 5.92 30.60 0.18 -1.77 16 26 C -0.12 -2.38 5.20 30.59 0.16 -2.22 16 27 C 0.12 3.95 5.14 86.36 0.44 4.39 16 28 H 0.24 15.40 8.31 -92.71 -0.77 14.63 16 29 H 0.36 21.14 7.65 -92.71 -0.71 20.43 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.38 9.84 9.12 -74.06 -0.68 9.16 16 33 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.05 1.75 6.83 -2.39 -0.02 1.73 16 35 H 0.04 1.49 7.53 -2.38 -0.02 1.47 16 36 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.10 1.91 5.93 -2.39 -0.01 1.89 16 38 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.13 2.22 6.37 -2.39 -0.02 2.20 16 40 H 0.09 2.42 7.69 -2.38 -0.02 2.41 16 41 H 0.04 1.21 8.10 -2.39 -0.02 1.19 16 42 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 1.01 6.56 -2.39 -0.02 0.99 16 46 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 48 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 53 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 54 H 0.06 2.37 7.01 -2.39 -0.02 2.36 16 55 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -78.71 409.09 1.29 -77.42 By element: Atomic # 1 Polarization: 44.33 SS G_CDS: -0.51 Total: 43.82 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 4.65 Total: -1.89 kcal Atomic # 7 Polarization: -118.69 SS G_CDS: -3.34 Total: -122.04 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: -1.53 Total: -48.50 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.03 Total: 51.19 kcal Total: -78.71 1.29 -77.42 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502597486.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.203 kcal (2) G-P(sol) polarization free energy of solvation -78.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds