Wall clock time and date at job start Tue Mar 31 2020 21:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00070 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.49862 * 59.99905 * 10 9 7 12 12 O 1.42906 * 109.46869 * 304.99983 * 11 10 9 13 13 C 1.53041 * 109.49771 * 299.93275 * 10 9 7 14 14 C 1.53109 * 109.50376 * 301.38306 * 13 10 9 15 15 C 1.53189 * 109.32997 * 298.65619 * 14 13 10 16 16 N 1.46922 * 108.77647 * 54.63033 * 15 14 13 17 17 C 1.34778 * 120.62812 * 126.41273 * 16 15 14 18 18 O 1.21285 * 120.00270 * 179.97438 * 17 16 15 19 19 C 1.50701 * 120.00373 * 359.97438 * 17 16 15 20 20 C 1.52997 * 109.47490 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.46963 * 179.97438 * 20 19 17 22 22 C 1.52998 * 109.47315 * 295.00150 * 21 20 19 23 23 C 1.53004 * 109.47022 * 180.02562 * 22 21 20 24 24 C 1.53002 * 109.47010 * 59.99931 * 23 22 21 25 25 C 1.53000 * 109.47019 * 299.99427 * 24 23 22 26 26 C 1.52996 * 109.47031 * 174.99703 * 21 20 19 27 27 C 1.46924 * 118.74265 * 306.39809 * 16 15 14 28 28 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 30 30 H 1.08993 * 109.47112 * 65.00298 * 11 10 9 31 31 H 1.08999 * 109.47225 * 185.00556 * 11 10 9 32 32 H 0.96702 * 113.99405 * 180.02562 * 12 11 10 33 33 H 1.09005 * 109.45583 * 61.43511 * 13 10 9 34 34 H 1.08996 * 109.46336 * 181.38854 * 13 10 9 35 35 H 1.08999 * 109.48884 * 178.69419 * 14 13 10 36 36 H 1.09000 * 109.48607 * 58.60868 * 14 13 10 37 37 H 1.09003 * 109.58215 * 294.84638 * 15 14 13 38 38 H 1.08996 * 109.70704 * 174.49437 * 15 14 13 39 39 H 1.09004 * 109.46774 * 300.00470 * 19 17 16 40 40 H 1.09002 * 109.46638 * 59.99240 * 19 17 16 41 41 H 1.08999 * 109.46892 * 299.99663 * 20 19 17 42 42 H 1.08996 * 109.47018 * 59.99821 * 20 19 17 43 43 H 1.09003 * 109.47030 * 55.00037 * 21 20 19 44 44 H 1.09003 * 109.46979 * 299.99919 * 22 21 20 45 45 H 1.08997 * 109.47116 * 59.99921 * 22 21 20 46 46 H 1.09003 * 109.47027 * 299.99706 * 23 22 21 47 47 H 1.09004 * 109.46701 * 180.02562 * 23 22 21 48 48 H 1.09001 * 109.46628 * 180.02562 * 24 23 22 49 49 H 1.08995 * 109.47320 * 59.99695 * 24 23 22 50 50 H 1.08995 * 109.47293 * 300.00284 * 25 24 23 51 51 H 1.08997 * 109.46851 * 180.02562 * 25 24 23 52 52 H 1.09004 * 109.47645 * 300.00107 * 26 21 20 53 53 H 1.09003 * 109.46941 * 60.00279 * 26 21 20 54 54 H 1.09001 * 109.58357 * 293.81318 * 27 16 15 55 55 H 1.09006 * 109.70533 * 173.46630 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 6 2.9426 -3.7358 1.2506 12 8 3.7920 -2.5879 1.3051 13 6 2.9319 -3.7421 -1.2487 14 6 2.0501 -3.6301 -2.4953 15 6 1.0550 -4.7945 -2.5189 16 7 0.3105 -4.8060 -1.2523 17 6 -1.0373 -4.8025 -1.2481 18 8 -1.6405 -4.8125 -0.1959 19 6 -1.7949 -4.7862 -2.5507 20 6 -3.2983 -4.7861 -2.2664 21 6 -4.0674 -4.7688 -3.5890 22 6 -3.7937 -3.4535 -4.3210 23 6 -4.5634 -3.4361 -5.6433 24 6 -6.0622 -3.5614 -5.3627 25 6 -6.3358 -4.8768 -4.6307 26 6 -5.5662 -4.8945 -3.3090 27 6 1.0630 -4.8216 0.0095 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3880 0.0092 30 1 2.3145 -3.7657 2.1408 31 1 3.5531 -4.6377 1.2061 32 1 4.3822 -2.5714 2.0710 33 1 3.6572 -2.9284 -1.2416 34 1 3.4577 -4.6968 -1.2605 35 1 2.6753 -3.6675 -3.3875 36 1 1.5052 -2.6863 -2.4717 37 1 1.5951 -5.7343 -2.6337 38 1 0.3610 -4.6681 -3.3497 39 1 -1.5310 -3.8906 -3.1133 40 1 -1.5356 -5.6705 -3.1329 41 1 -3.5617 -5.6819 -1.7041 42 1 -3.5578 -3.9020 -1.6841 43 1 -3.7423 -5.6042 -4.2092 44 1 -4.1187 -2.6181 -3.7009 45 1 -2.7259 -3.3641 -4.5205 46 1 -4.2387 -4.2715 -6.2637 47 1 -4.3680 -2.4992 -6.1650 48 1 -6.6104 -3.5494 -6.3047 49 1 -6.3868 -2.7261 -4.7423 50 1 -6.0112 -5.7121 -5.2511 51 1 -7.4036 -4.9662 -4.4312 52 1 -5.7612 -5.8316 -2.7874 53 1 -5.8912 -4.0591 -2.6888 54 1 1.6035 -5.7637 0.1008 55 1 0.3758 -4.7118 0.8486 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502597487.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:33 Heat of formation + Delta-G solvation = -123.936770 kcal Electronic energy + Delta-G solvation = -31721.789802 eV Core-core repulsion = 27756.597815 eV Total energy + Delta-G solvation = -3965.191987 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.36749 -39.80762 -39.10506 -37.12016 -35.53566 -34.80735 -33.70805 -32.65841 -31.62843 -30.88119 -30.05208 -26.89638 -26.57258 -25.62252 -24.69090 -23.38397 -23.03253 -21.76340 -20.59824 -20.42100 -19.57596 -19.17586 -18.06391 -17.89684 -16.84894 -16.72605 -16.50336 -16.06292 -15.78048 -15.54668 -15.36321 -15.07131 -15.02349 -14.86428 -14.74233 -14.63148 -14.26933 -13.91970 -13.72761 -13.46071 -13.38904 -13.25204 -12.94523 -12.89559 -12.80856 -12.69736 -12.58087 -12.40765 -12.02844 -11.96427 -11.94423 -11.75300 -11.69379 -11.63336 -11.49064 -11.28119 -11.26418 -10.92561 -10.81086 -10.76425 -10.61331 -10.54570 -9.48209 -8.86425 -7.77415 -5.02326 1.45360 1.46468 1.56608 1.72007 2.14411 2.65028 3.43407 3.56509 3.69819 3.77703 3.80245 3.83799 3.98005 4.02513 4.15051 4.18550 4.23425 4.29142 4.42773 4.44004 4.47193 4.49621 4.55849 4.60988 4.61254 4.66751 4.68892 4.69642 4.71030 4.79368 4.81986 4.83987 4.94232 5.02961 5.04396 5.05521 5.11724 5.20668 5.26548 5.31734 5.33661 5.36421 5.40366 5.46236 5.53200 5.58027 5.64565 5.67909 5.71915 5.93464 6.44248 6.54739 7.14515 7.29722 7.50951 8.22500 8.45914 9.47182 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011994 B = 0.003282 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.865194 B = 8528.930255 C = 9810.924892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.098 4.098 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.303 1.303 6 H -0.307 1.307 7 C -0.171 4.171 8 H 0.096 0.904 9 N -0.715 5.715 10 C 0.175 3.825 11 C 0.074 3.926 12 O -0.564 6.564 13 C -0.110 4.110 14 C -0.126 4.126 15 C 0.111 3.889 16 N -0.601 5.601 17 C 0.504 3.496 18 O -0.594 6.594 19 C -0.128 4.128 20 C -0.093 4.093 21 C -0.074 4.074 22 C -0.121 4.121 23 C -0.115 4.115 24 C -0.122 4.122 25 C -0.113 4.113 26 C -0.117 4.117 27 C 0.119 3.881 28 H 0.238 0.762 29 H 0.363 0.637 30 H 0.021 0.979 31 H 0.069 0.931 32 H 0.374 0.626 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.036 0.964 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.127 0.873 41 H 0.062 0.938 42 H 0.033 0.967 43 H 0.091 0.909 44 H 0.038 0.962 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.058 0.942 48 H 0.071 0.929 49 H 0.048 0.952 50 H 0.073 0.927 51 H 0.065 0.935 52 H 0.066 0.934 53 H 0.044 0.956 54 H 0.103 0.897 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 -17.302 -12.341 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.288 4.288 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.231 1.231 6 H -0.235 1.235 7 C -0.303 4.303 8 H 0.113 0.887 9 N -0.353 5.353 10 C 0.084 3.916 11 C -0.006 4.006 12 O -0.369 6.369 13 C -0.149 4.149 14 C -0.165 4.165 15 C -0.010 4.010 16 N -0.333 5.333 17 C 0.294 3.706 18 O -0.475 6.475 19 C -0.167 4.167 20 C -0.131 4.131 21 C -0.092 4.092 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.160 4.160 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.005 4.005 28 H 0.047 0.953 29 H 0.194 0.806 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.221 0.779 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.055 0.945 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.145 0.855 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.109 0.891 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.077 0.923 48 H 0.090 0.910 49 H 0.066 0.934 50 H 0.092 0.908 51 H 0.084 0.916 52 H 0.084 0.916 53 H 0.063 0.937 54 H 0.121 0.879 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.780 -17.066 -12.361 21.255 hybrid contribution 0.158 1.760 1.379 2.242 sum -2.622 -15.306 -10.982 19.020 Atomic orbital electron populations 1.69880 1.06482 1.24550 1.62951 1.25415 0.96007 1.00484 1.06867 0.85228 0.78457 0.81393 0.75828 1.19108 1.23121 1.23527 1.19867 0.91948 0.83976 1.34555 0.88656 1.42586 1.04573 1.00714 1.87431 1.20402 0.91153 0.86018 0.94040 1.22647 0.92298 0.88048 0.97620 1.86802 1.55139 1.44929 1.50069 1.21780 0.97523 1.01186 0.94439 1.21764 0.97974 0.98328 0.98407 1.21993 0.95020 0.99400 0.84603 1.48047 1.05253 1.72111 1.07873 1.21428 0.82306 0.74536 0.92293 1.90653 1.68863 1.52367 1.35630 1.21742 0.95444 1.05613 0.93912 1.21312 0.92829 1.01413 0.97584 1.21103 0.94882 0.98396 0.94862 1.21670 1.00373 0.96995 0.96781 1.21515 0.95091 1.02143 0.96535 1.21565 0.96303 0.97663 1.00427 1.21492 0.99812 0.97907 0.95873 1.21585 0.94597 1.01438 0.97859 1.21587 0.93861 0.98052 0.86971 0.95287 0.80586 0.96023 0.91352 0.77892 0.93640 0.90058 0.89292 0.94498 0.88150 0.88180 0.88632 0.85528 0.91968 0.94843 0.89088 0.94312 0.91687 0.90630 0.92283 0.90993 0.93357 0.90841 0.91641 0.91561 0.93722 0.87873 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.19 13.06 21.65 0.28 -63.91 16 2 C -0.10 -5.91 5.50 84.86 0.47 -5.45 16 3 Si 0.96 49.30 29.55 68.60 2.03 51.32 16 4 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.30 -15.66 7.11 99.48 0.71 -14.95 16 6 H -0.31 -16.10 7.11 99.48 0.71 -15.39 16 7 C -0.17 -9.52 8.14 84.03 0.68 -8.84 16 8 H 0.10 5.22 5.29 -2.91 -0.02 5.21 16 9 N -0.72 -36.05 4.22 -303.00 -1.28 -37.32 16 10 C 0.17 6.50 0.68 3.68 0.00 6.50 16 11 C 0.07 2.50 6.09 71.98 0.44 2.94 16 12 O -0.56 -20.75 9.91 -148.98 -1.48 -22.22 16 13 C -0.11 -3.51 4.43 30.64 0.14 -3.37 16 14 C -0.13 -3.74 5.93 30.69 0.18 -3.56 16 15 C 0.11 2.57 6.34 86.36 0.55 3.12 16 16 N -0.60 -18.72 2.87 -818.92 -2.35 -21.07 16 17 C 0.50 17.61 7.70 87.66 0.67 18.28 16 18 O -0.59 -26.46 15.40 -3.05 -0.05 -26.51 16 19 C -0.13 -3.24 3.80 29.85 0.11 -3.13 16 20 C -0.09 -2.49 3.97 30.59 0.12 -2.37 16 21 C -0.07 -1.49 2.19 -10.80 -0.02 -1.51 16 22 C -0.12 -2.60 4.96 30.60 0.15 -2.45 16 23 C -0.12 -1.99 5.92 30.60 0.18 -1.81 16 24 C -0.12 -2.01 5.92 30.59 0.18 -1.83 16 25 C -0.11 -1.76 5.92 30.58 0.18 -1.58 16 26 C -0.12 -2.28 5.20 30.58 0.16 -2.12 16 27 C 0.12 3.94 5.14 86.36 0.44 4.38 16 28 H 0.24 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.36 21.15 7.65 -92.71 -0.71 20.44 16 30 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.37 9.93 9.12 -74.06 -0.68 9.25 16 33 H 0.04 1.71 6.98 -2.38 -0.02 1.70 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.08 16 36 H 0.04 1.49 7.53 -2.39 -0.02 1.47 16 37 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 1.89 5.93 -2.39 -0.01 1.88 16 39 H 0.10 2.47 6.12 -2.38 -0.01 2.45 16 40 H 0.13 2.16 7.94 -2.39 -0.02 2.14 16 41 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 42 H 0.03 1.14 8.10 -2.39 -0.02 1.12 16 43 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.06 1.38 6.56 -2.39 -0.02 1.36 16 46 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 48 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 52 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 53 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 54 H 0.10 2.57 8.14 -2.39 -0.02 2.56 16 55 H 0.06 2.35 7.01 -2.38 -0.02 2.33 16 Total: -1.00 -79.58 409.08 1.29 -78.30 By element: Atomic # 1 Polarization: 44.71 SS G_CDS: -0.51 Total: 44.20 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 4.64 Total: -2.78 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -3.34 Total: -122.31 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -1.52 Total: -48.73 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 2.03 Total: 51.32 kcal Total: -79.58 1.29 -78.30 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502597487.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.642 kcal (2) G-P(sol) polarization free energy of solvation -79.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds