Wall clock time and date at job start Tue Mar 31 2020 21:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00103 * 2 1 4 4 H 1.48505 * 109.46767 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47319 * 299.99865 * 3 2 1 6 6 H 1.48504 * 109.46983 * 60.00118 * 3 2 1 7 7 C 1.38809 * 119.99395 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99609 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00359 * 359.97438 * 7 2 1 10 10 C 1.47418 * 125.64923 * 0.02779 * 9 7 2 11 11 C 1.54908 * 104.83324 * 155.82569 * 10 9 7 12 12 C 1.55150 * 101.58546 * 37.00877 * 11 10 9 13 13 H 1.09000 * 110.72162 * 83.03418 * 12 11 10 14 14 C 1.52998 * 110.72253 * 206.13753 * 12 11 10 15 15 H 1.09000 * 109.52208 * 59.91826 * 14 12 11 16 16 C 1.53038 * 109.49743 * 179.97438 * 14 12 11 17 17 C 1.53036 * 109.52947 * 181.30798 * 16 14 12 18 18 C 1.53200 * 109.31417 * 298.64509 * 17 16 14 19 19 N 1.46922 * 108.77113 * 54.62885 * 18 17 16 20 20 C 1.34785 * 120.62626 * 126.37555 * 19 18 17 21 21 O 1.21281 * 119.99969 * 175.11839 * 20 19 18 22 22 C 1.50701 * 119.99941 * 355.11289 * 20 19 18 23 23 C 1.53000 * 115.55111 * 280.64491 * 22 20 19 24 24 C 1.52998 * 109.47392 * 294.59909 * 23 22 20 25 25 F 1.39895 * 109.47148 * 175.75978 * 24 23 22 26 26 C 1.53001 * 117.49466 * 134.93842 * 22 20 19 27 27 C 1.53000 * 60.00101 * 252.51196 * 26 22 20 28 28 C 1.46917 * 118.74425 * 306.39498 * 19 18 17 29 29 C 1.47022 * 125.64686 * 179.97438 * 9 7 2 30 30 H 0.97008 * 119.99656 * 0.02562 * 1 2 3 31 31 H 1.09005 * 110.36488 * 36.98593 * 10 9 7 32 32 H 1.09004 * 110.46285 * 274.71198 * 10 9 7 33 33 H 1.09008 * 111.00395 * 278.93068 * 11 10 9 34 34 H 1.09000 * 111.03702 * 155.09844 * 11 10 9 35 35 H 1.09009 * 109.46056 * 61.29801 * 16 14 12 36 36 H 1.09000 * 109.46686 * 301.32575 * 16 14 12 37 37 H 1.09002 * 109.49842 * 58.59184 * 17 16 14 38 38 H 1.09003 * 109.50308 * 178.65925 * 17 16 14 39 39 H 1.08993 * 109.58569 * 174.41868 * 18 17 16 40 40 H 1.08997 * 109.58420 * 294.84734 * 18 17 16 41 41 H 1.09001 * 109.46870 * 54.60215 * 23 22 20 42 42 H 1.09007 * 109.46534 * 174.59814 * 23 22 20 43 43 H 1.08997 * 109.47098 * 295.76867 * 24 23 22 44 44 H 1.09004 * 109.46591 * 55.76297 * 24 23 22 45 45 H 1.09005 * 117.50276 * 359.97438 * 26 22 20 46 46 H 1.09004 * 117.49533 * 145.02594 * 26 22 20 47 47 H 1.08998 * 117.49975 * 252.51161 * 27 26 22 48 48 H 1.09001 * 117.49941 * 107.48835 * 27 26 22 49 49 H 1.09004 * 109.59294 * 173.39990 * 28 19 18 50 50 H 1.09000 * 109.58432 * 293.81920 * 28 19 18 51 51 H 1.08997 * 109.88487 * 61.68855 * 29 9 7 52 52 H 1.09004 * 109.88615 * 300.52028 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1416 -2.5331 -0.0006 11 6 -0.4018 -3.9317 -0.6138 12 6 0.7781 -4.7524 -0.0297 13 1 0.5445 -5.1016 0.9761 14 6 1.1228 -5.9304 -0.9432 15 1 1.4057 -5.5574 -1.9275 16 6 2.2883 -6.7191 -0.3419 17 6 2.6550 -7.8784 -1.2712 18 6 1.4532 -8.8188 -1.4066 19 7 0.2890 -8.0379 -1.8462 20 6 -0.4123 -8.4057 -2.9369 21 8 -1.4224 -7.8061 -3.2390 22 6 0.0587 -9.5617 -3.7812 23 6 1.1972 -9.2477 -4.7539 24 6 0.7062 -8.2565 -5.8108 25 9 1.7719 -7.8951 -6.6420 26 6 -0.9885 -10.5849 -4.2252 27 6 0.0338 -10.9546 -3.1486 28 6 -0.0961 -6.8484 -1.0746 29 6 1.9316 -3.7275 -0.0016 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5994 -1.7581 -0.6154 32 1 -0.5291 -2.4871 1.0172 33 1 -0.3523 -3.8964 -1.7022 34 1 -1.3592 -4.3328 -0.2812 35 1 1.9965 -7.1127 0.6319 36 1 3.1496 -6.0615 -0.2245 37 1 2.9231 -7.4871 -2.2526 38 1 3.5006 -8.4255 -0.8543 39 1 1.6747 -9.5910 -2.1433 40 1 1.2405 -9.2808 -0.4426 41 1 2.0327 -8.8111 -4.2065 42 1 1.5227 -10.1669 -5.2411 43 1 -0.0788 -8.7209 -6.4076 44 1 0.3111 -7.3674 -5.3193 45 1 -2.0181 -10.4222 -3.9064 46 1 -0.8665 -11.0346 -5.2107 47 1 0.8283 -11.6475 -3.4258 48 1 -0.3232 -11.0348 -2.1219 49 1 -0.8971 -6.3205 -1.5923 50 1 -0.4353 -7.1498 -0.0836 51 1 2.5280 -3.8652 0.9003 52 1 2.5581 -3.8503 -0.8852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505471829.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:59 Heat of formation + Delta-G solvation = -69.112872 kcal Electronic energy + Delta-G solvation = -30956.765358 eV Core-core repulsion = 26870.490409 eV Total energy + Delta-G solvation = -4086.274950 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -48.65519 -41.71383 -39.96869 -38.25557 -37.74502 -35.16770 -33.57633 -32.55348 -32.20115 -30.69026 -29.00767 -26.86032 -26.57305 -25.06031 -23.99343 -23.54865 -23.10760 -21.89974 -21.51625 -20.75671 -19.48245 -18.87790 -17.92813 -17.39741 -17.24725 -17.01515 -16.75044 -16.49719 -15.99524 -15.82994 -15.64384 -15.45443 -15.29368 -14.97464 -14.64508 -14.34983 -14.14620 -13.88652 -13.71044 -13.62843 -13.43781 -13.39837 -13.27146 -12.89405 -12.77085 -12.63327 -12.46917 -12.36655 -12.08957 -12.03738 -11.96458 -11.85108 -11.80647 -11.69679 -11.49197 -11.38958 -11.38753 -11.02238 -11.01689 -10.77234 -10.59058 -9.63683 -8.90039 -7.79188 -5.23951 1.43705 1.45420 1.50633 1.55762 1.93122 2.47805 2.61224 3.29961 3.34798 3.47787 3.64134 3.68299 3.72643 3.74964 3.79497 3.91308 3.98124 4.08788 4.12727 4.14095 4.19060 4.25670 4.36334 4.40967 4.48498 4.55553 4.61956 4.68114 4.74700 4.77885 4.81089 4.85353 4.87635 4.88780 4.91310 4.98292 5.00848 5.05271 5.05778 5.15572 5.18522 5.22468 5.34856 5.39248 5.44518 5.52527 5.56171 5.63153 5.79968 6.29003 6.41279 7.08768 7.12613 7.77231 8.41766 9.23027 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016121 B = 0.002677 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.499954 B =10456.369894 C =10871.401064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.071 4.071 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.081 0.919 9 N -0.629 5.629 10 C 0.154 3.846 11 C -0.126 4.126 12 C -0.075 4.075 13 H 0.087 0.913 14 C -0.074 4.074 15 H 0.049 0.951 16 C -0.114 4.114 17 C -0.130 4.130 18 C 0.102 3.898 19 N -0.603 5.603 20 C 0.540 3.460 21 O -0.586 6.586 22 C -0.170 4.170 23 C -0.096 4.096 24 C 0.057 3.943 25 F -0.231 7.231 26 C -0.149 4.149 27 C -0.131 4.131 28 C 0.121 3.879 29 C 0.142 3.858 30 H 0.246 0.754 31 H 0.066 0.934 32 H -0.012 1.012 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.116 0.884 43 H 0.092 0.908 44 H 0.048 0.952 45 H 0.084 0.916 46 H 0.126 0.874 47 H 0.138 0.862 48 H 0.103 0.897 49 H 0.065 0.935 50 H 0.082 0.918 51 H 0.025 0.975 52 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.772 -29.970 -5.593 30.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.264 4.264 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.367 4.367 8 H 0.099 0.901 9 N -0.355 5.355 10 C 0.029 3.971 11 C -0.164 4.164 12 C -0.095 4.095 13 H 0.105 0.895 14 C -0.094 4.094 15 H 0.068 0.932 16 C -0.151 4.151 17 C -0.168 4.168 18 C -0.019 4.019 19 N -0.334 5.334 20 C 0.329 3.671 21 O -0.466 6.466 22 C -0.173 4.173 23 C -0.134 4.134 24 C 0.002 3.998 25 F -0.212 7.212 26 C -0.186 4.186 27 C -0.168 4.168 28 C -0.002 4.002 29 C 0.018 3.982 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.006 0.994 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.135 0.865 43 H 0.110 0.890 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.144 0.856 47 H 0.156 0.844 48 H 0.121 0.879 49 H 0.083 0.917 50 H 0.100 0.900 51 H 0.043 0.957 52 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 3.270 -29.450 -5.747 30.183 hybrid contribution -0.024 2.030 0.081 2.032 sum 3.247 -27.420 -5.666 28.187 Atomic orbital electron populations 1.70099 1.06326 1.24890 1.58774 1.25692 0.96677 1.01169 1.02818 0.84952 0.78123 0.79163 0.76758 1.18920 1.21895 1.21749 1.19515 0.91019 0.83878 1.42317 0.90122 1.44866 1.02732 1.01220 1.86732 1.21675 0.84267 0.94845 0.96320 1.22869 0.98325 0.96172 0.99053 1.22049 0.94448 0.93578 0.99396 0.89491 1.21318 0.96042 0.93912 0.98089 0.93213 1.21593 0.96954 0.97057 0.99537 1.21930 0.98404 0.96587 0.99902 1.22136 0.83586 0.93893 1.02321 1.48200 1.30627 1.27541 1.26997 1.20227 0.82429 0.84306 0.80169 1.90696 1.27122 1.57013 1.71736 1.21158 1.03038 0.90472 1.02657 1.21600 0.95822 1.01264 0.94690 1.22054 0.86854 0.99245 0.91649 1.92740 1.60229 1.93692 1.74583 1.23150 0.95073 0.98806 1.01582 1.23343 1.02214 0.92448 0.98781 1.21531 0.96737 0.85653 0.96253 1.21443 0.94875 0.84495 0.97432 0.94412 0.91570 0.99403 0.93359 0.90384 0.90206 0.91988 0.92658 0.87763 0.87104 0.89253 0.89852 0.86536 0.88961 0.93387 0.89732 0.85617 0.84378 0.87885 0.91669 0.89990 0.95729 0.96173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.12 10.09 21.65 0.22 -58.90 16 2 C -0.07 -4.21 5.49 84.86 0.47 -3.75 16 3 Si 0.98 47.20 29.55 68.60 2.03 49.22 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.24 -13.92 10.27 84.03 0.86 -13.06 16 8 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 9 N -0.63 -34.06 3.39 -691.98 -2.35 -36.41 16 10 C 0.15 8.08 5.89 86.86 0.51 8.59 16 11 C -0.13 -5.04 5.49 31.98 0.18 -4.87 16 12 C -0.08 -2.54 2.49 -9.61 -0.02 -2.56 16 13 H 0.09 2.68 8.14 -2.39 -0.02 2.67 16 14 C -0.07 -1.97 1.74 -10.73 -0.02 -1.99 16 15 H 0.05 1.58 8.07 -2.39 -0.02 1.56 16 16 C -0.11 -2.23 5.03 30.62 0.15 -2.08 16 17 C -0.13 -1.79 6.08 30.67 0.19 -1.60 16 18 C 0.10 1.22 5.96 86.37 0.51 1.74 16 19 N -0.60 -12.33 2.97 -818.98 -2.43 -14.77 16 20 C 0.54 12.65 6.19 87.66 0.54 13.19 16 21 O -0.59 -19.52 16.42 -3.03 -0.05 -19.57 16 22 C -0.17 -2.39 0.74 -52.93 -0.04 -2.43 16 23 C -0.10 -1.21 5.32 30.59 0.16 -1.05 16 24 C 0.06 1.07 7.48 71.98 0.54 1.61 16 25 F -0.23 -5.37 17.36 44.97 0.78 -4.59 16 26 C -0.15 -1.69 9.87 30.59 0.30 -1.39 16 27 C -0.13 -0.92 8.22 30.60 0.25 -0.67 16 28 C 0.12 3.03 5.37 86.35 0.46 3.49 16 29 C 0.14 6.00 5.97 86.73 0.52 6.52 16 30 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 31 H 0.07 3.98 5.87 -2.38 -0.01 3.97 16 32 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 33 H 0.05 2.03 8.05 -2.38 -0.02 2.01 16 34 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.06 1.36 7.45 -2.39 -0.02 1.34 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.11 0.85 4.70 -2.39 -0.01 0.84 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 1.08 7.64 -2.39 -0.02 1.06 16 42 H 0.12 0.80 8.09 -2.38 -0.02 0.78 16 43 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.05 1.18 7.59 -2.39 -0.02 1.16 16 45 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.14 0.18 8.14 -2.39 -0.02 0.16 16 48 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.06 2.05 6.40 -2.39 -0.02 2.04 16 50 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 51 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.02 0.86 7.76 -2.38 -0.02 0.84 16 Total: -1.00 -77.66 400.45 4.65 -73.02 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.88 Total: 12.29 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 5.57 Total: -0.30 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -4.56 Total: -110.08 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.05 Total: -19.57 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.78 Total: -4.59 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.22 kcal Total: -77.66 4.65 -73.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505471829.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.905 kcal (2) G-P(sol) polarization free energy of solvation -77.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds