Wall clock time and date at job start Tue Mar 31 2020 21:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47506 * 2 1 4 4 C 1.50702 * 109.46602 * 119.99901 * 2 1 3 5 5 N 1.31076 * 126.66352 * 300.03820 * 4 2 1 6 6 N 1.28835 * 107.99025 * 179.97438 * 5 4 2 7 7 N 1.28739 * 109.40014 * 359.73907 * 6 5 4 8 8 N 1.29022 * 108.80922 * 0.43529 * 7 6 5 9 9 C 1.46491 * 126.43773 * 179.83763 * 8 7 6 10 10 C 1.50702 * 109.46957 * 269.68709 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46506 * 120.00264 * 0.28128 * 12 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 15 15 C 1.53002 * 109.47088 * 89.99979 * 14 12 10 16 16 C 1.52999 * 109.47481 * 300.00513 * 15 14 12 17 17 C 1.53001 * 109.46829 * 60.00275 * 15 14 12 18 18 C 1.52995 * 109.47427 * 179.97438 * 15 14 12 19 19 N 1.46503 * 109.47393 * 180.02562 * 18 15 14 20 20 C 1.36936 * 119.99889 * 180.02562 * 19 18 15 21 21 H 1.07996 * 120.00380 * 359.97438 * 20 19 18 22 22 C 1.38809 * 119.99703 * 180.02562 * 20 19 18 23 23 N 1.31617 * 120.00285 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00110 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46931 * 59.99781 * 24 22 20 26 26 H 1.48500 * 109.47159 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46990 * 299.99945 * 24 22 20 28 28 H 1.08996 * 109.47352 * 300.00228 * 1 2 3 29 29 H 1.09001 * 109.46424 * 60.00198 * 1 2 3 30 30 H 1.08997 * 109.47296 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47352 * 239.99772 * 2 1 3 32 32 H 1.08999 * 109.47006 * 299.99908 * 3 2 1 33 33 H 1.09010 * 109.47059 * 59.99551 * 3 2 1 34 34 H 1.09000 * 109.48001 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47166 * 149.68974 * 9 8 7 36 36 H 1.08994 * 109.47507 * 29.68681 * 9 8 7 37 37 H 1.08998 * 109.46921 * 89.99095 * 13 12 10 38 38 H 1.08994 * 109.46996 * 209.99677 * 13 12 10 39 39 H 1.09001 * 109.46578 * 329.99540 * 13 12 10 40 40 H 1.09001 * 109.47567 * 210.00057 * 14 12 10 41 41 H 1.09005 * 109.47076 * 330.00563 * 14 12 10 42 42 H 1.08998 * 109.46857 * 59.99368 * 16 15 14 43 43 H 1.08993 * 109.46968 * 179.97438 * 16 15 14 44 44 H 1.08996 * 109.46881 * 299.99845 * 16 15 14 45 45 H 1.09001 * 109.47207 * 60.00301 * 17 15 14 46 46 H 1.09002 * 109.47399 * 179.97438 * 17 15 14 47 47 H 1.08998 * 109.47342 * 299.99886 * 17 15 14 48 48 H 1.09006 * 109.47343 * 300.00688 * 18 15 14 49 49 H 1.09005 * 109.46868 * 60.00504 * 18 15 14 50 50 H 0.96998 * 119.99783 * 0.02562 * 19 18 15 51 51 H 0.96997 * 120.00450 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 7 1.7968 -0.3788 2.4766 6 7 2.3978 -1.2293 3.2351 7 7 3.0060 -2.0981 2.5053 8 7 2.8093 -1.8090 1.2633 9 6 3.3287 -2.5423 0.1064 10 6 4.6669 -1.9733 -0.2894 11 8 5.1402 -1.0467 0.3338 12 7 5.3404 -2.4979 -1.3323 13 6 4.7689 -3.6175 -2.0849 14 6 6.6439 -1.9487 -1.7134 15 6 7.7496 -2.6878 -0.9570 16 6 7.5427 -2.5123 0.5487 17 6 7.7008 -4.1761 -1.3084 18 6 9.1111 -2.1148 -1.3555 19 7 10.1699 -2.8229 -0.6317 20 6 11.4809 -2.4796 -0.8278 21 1 11.7345 -1.6872 -1.5163 22 6 12.4841 -3.1509 -0.1424 23 7 12.1751 -4.1170 0.6964 24 14 14.2726 -2.6832 -0.4104 25 1 14.4734 -1.2600 -0.0369 26 1 15.1409 -3.5431 0.4333 27 1 14.6253 -2.8743 -1.8402 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 2.6325 -2.4468 -0.7268 36 1 3.4437 -3.5948 0.3651 37 1 4.1627 -3.2322 -2.9048 38 1 5.5733 -4.2338 -2.4861 39 1 4.1454 -4.2191 -1.4236 40 1 6.7914 -2.0738 -2.7861 41 1 6.6788 -0.8884 -1.4630 42 1 6.5728 -2.9209 0.8322 43 1 8.3302 -3.0393 1.0875 44 1 7.5775 -1.4521 0.7991 45 1 7.8483 -4.3012 -2.3812 46 1 8.4888 -4.7027 -0.7700 47 1 6.7309 -4.5848 -1.0249 48 1 9.2583 -2.2402 -2.4283 49 1 9.1462 -1.0544 -1.1054 50 1 9.9421 -3.5349 -0.0136 51 1 12.8761 -4.5859 1.1756 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505839663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:21 Heat of formation + Delta-G solvation = 93.742641 kcal Electronic energy + Delta-G solvation = -30861.105950 eV Core-core repulsion = 26834.105658 eV Total energy + Delta-G solvation = -4027.000292 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.37066 -40.60780 -37.68986 -36.51060 -35.57332 -35.40858 -33.19259 -31.69697 -30.43071 -29.52025 -28.10745 -27.64791 -26.78788 -25.98647 -25.32498 -24.66473 -23.52158 -22.49169 -21.09443 -19.99029 -18.55328 -18.17548 -17.78685 -17.32490 -16.56658 -16.39481 -16.15901 -15.57607 -15.04097 -14.58520 -14.49478 -14.22053 -13.86417 -13.68449 -13.60144 -13.43267 -13.39264 -13.04529 -12.92037 -12.69176 -12.63495 -12.41797 -12.27861 -12.22886 -12.03685 -11.78126 -11.60136 -11.52606 -11.35299 -11.24322 -11.16857 -11.02598 -10.81121 -10.80683 -10.42643 -10.31289 -10.23451 -10.10152 -9.86170 -9.69608 -8.86070 -8.85989 -6.90011 -5.75386 -3.03461 0.98524 1.55630 2.08530 2.12034 2.62879 3.44520 3.49049 3.50053 3.53976 3.77729 3.80120 4.04757 4.25859 4.51253 4.59820 4.63390 4.65229 4.79370 4.90534 4.99537 5.15079 5.17028 5.19676 5.27458 5.28677 5.30022 5.39714 5.44505 5.50418 5.52953 5.61785 5.73800 5.77829 5.83192 5.84195 5.87661 5.97569 6.04598 6.19306 6.28268 6.43356 6.50248 6.67236 6.71488 6.85349 6.90722 6.97045 7.69076 7.70625 8.43880 8.46670 9.54962 10.13259 10.47810 11.47581 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.019488 B = 0.002439 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.410948 B =11477.856126 C =11799.129248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.009 4.009 3 C -0.144 4.144 4 C 0.200 3.800 5 N -0.300 5.300 6 N -0.072 5.072 7 N -0.082 5.082 8 N -0.294 5.294 9 C 0.093 3.907 10 C 0.498 3.502 11 O -0.506 6.506 12 N -0.599 5.599 13 C 0.063 3.937 14 C 0.128 3.872 15 C -0.087 4.087 16 C -0.122 4.122 17 C -0.136 4.136 18 C 0.166 3.834 19 N -0.727 5.727 20 C -0.239 4.239 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.035 0.965 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.068 0.932 47 H 0.044 0.956 48 H 0.018 0.982 49 H 0.019 0.981 50 H 0.385 0.615 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.300 2.562 -9.867 29.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 C -0.203 4.203 4 C -0.078 4.078 5 N -0.149 5.149 6 N -0.066 5.066 7 N -0.067 5.067 8 N -0.095 5.095 9 C -0.033 4.033 10 C 0.282 3.718 11 O -0.380 6.380 12 N -0.333 5.333 13 C -0.080 4.080 14 C 0.006 3.994 15 C -0.088 4.088 16 C -0.180 4.180 17 C -0.194 4.194 18 C 0.038 3.962 19 N -0.373 5.373 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.054 0.946 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.063 0.937 48 H 0.035 0.965 49 H 0.036 0.964 50 H 0.220 0.780 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -26.766 2.961 -8.138 28.133 hybrid contribution 1.188 -0.313 -0.931 1.542 sum -25.578 2.648 -9.069 27.267 Atomic orbital electron populations 1.21853 0.91962 1.02637 1.03740 1.19772 0.97258 0.96611 0.89471 1.21833 1.02094 0.92963 1.03386 1.26063 0.94940 0.88816 0.97991 1.74944 1.20672 1.20939 0.98312 1.78623 1.06820 0.98814 1.22337 1.78939 1.18823 1.21814 0.87114 1.47885 1.33863 1.20883 1.06873 1.22060 0.96400 0.98648 0.86234 1.20150 0.86052 0.84319 0.81276 1.90859 1.68003 1.28076 1.51089 1.47695 1.20398 1.34374 1.30802 1.22121 1.00286 0.89137 0.96490 1.21664 0.79931 0.98884 0.98905 1.21128 0.95196 0.95943 0.96529 1.21706 1.00035 1.02029 0.94207 1.21896 1.01137 0.95256 1.01083 1.20565 0.86073 0.94776 0.94795 1.42370 1.01468 1.42235 1.51193 1.19176 0.83140 1.14451 1.20229 0.91332 1.24724 0.97939 0.98774 0.99544 1.69641 1.31948 1.25719 1.30983 0.86269 0.85047 0.77589 0.77279 1.21305 1.21714 1.21327 0.90880 0.90787 0.92419 0.89326 0.90932 0.91010 0.91771 0.84633 0.84110 0.91954 0.89176 0.91252 0.89999 0.89577 0.94616 0.91944 0.92623 0.93091 0.91281 0.93684 0.96461 0.96356 0.77993 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.18 37.16 0.34 -0.38 16 2 C -0.01 -0.06 3.26 -91.77 -0.30 -0.36 16 3 C -0.14 -1.06 9.18 37.15 0.34 -0.72 16 4 C 0.20 2.19 6.64 -155.42 -1.03 1.16 16 5 N -0.30 -4.24 12.36 32.70 0.40 -3.84 16 6 N -0.07 -1.16 13.43 60.35 0.81 -0.35 16 7 N -0.08 -1.21 13.29 60.35 0.80 -0.40 16 8 N -0.29 -3.31 2.83 -59.45 -0.17 -3.47 16 9 C 0.09 0.65 5.12 -5.20 -0.03 0.62 16 10 C 0.50 5.23 6.15 -10.98 -0.07 5.16 16 11 O -0.51 -7.82 14.20 5.55 0.08 -7.74 16 12 N -0.60 -5.31 2.40 -181.57 -0.44 -5.75 16 13 C 0.06 0.29 9.15 59.85 0.55 0.84 16 14 C 0.13 1.50 4.60 -4.04 -0.02 1.48 16 15 C -0.09 -1.34 0.60 -154.51 -0.09 -1.43 16 16 C -0.12 -2.18 6.97 37.16 0.26 -1.92 16 17 C -0.14 -1.94 7.05 37.16 0.26 -1.68 16 18 C 0.17 3.28 5.15 -4.04 -0.02 3.26 16 19 N -0.73 -18.27 5.00 -59.91 -0.30 -18.57 16 20 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 24 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.39 6.85 -51.93 -0.36 0.04 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.14 0.33 7.10 -51.93 -0.37 -0.04 16 36 H 0.14 0.70 7.40 -51.93 -0.38 0.32 16 37 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 38 H 0.09 0.48 6.05 -51.93 -0.31 0.16 16 39 H 0.07 0.17 6.43 -51.93 -0.33 -0.16 16 40 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 41 H 0.09 1.15 7.42 -51.93 -0.39 0.76 16 42 H 0.03 0.59 6.15 -51.93 -0.32 0.27 16 43 H 0.06 1.28 6.86 -51.93 -0.36 0.93 16 44 H 0.05 1.09 7.73 -51.93 -0.40 0.69 16 45 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 46 H 0.07 1.23 6.86 -51.93 -0.36 0.87 16 47 H 0.04 0.51 5.99 -51.93 -0.31 0.20 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.38 10.16 5.36 -40.82 -0.22 9.94 16 51 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 401.73 15.07 6.05 6.05 Total: -1.00 -37.45 401.73 -5.40 -42.85 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.29 Total: 2.66 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -0.05 Total: -1.33 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 1.84 Total: -60.11 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.08 Total: -7.74 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.45 -5.40 -42.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505839663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.597 kcal (2) G-P(sol) polarization free energy of solvation -37.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds