Wall clock time and date at job start Tue Mar 31 2020 21:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47506 * 2 1 4 4 C 1.50702 * 109.46602 * 119.99901 * 2 1 3 5 5 N 1.31076 * 126.66352 * 300.03820 * 4 2 1 6 6 N 1.28835 * 107.99025 * 179.97438 * 5 4 2 7 7 N 1.28739 * 109.40014 * 359.73907 * 6 5 4 8 8 N 1.29022 * 108.80922 * 0.43529 * 7 6 5 9 9 C 1.46491 * 126.43773 * 179.83763 * 8 7 6 10 10 C 1.50702 * 109.46957 * 269.68709 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46506 * 120.00264 * 0.28128 * 12 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 15 15 C 1.53002 * 109.47088 * 89.99979 * 14 12 10 16 16 C 1.52999 * 109.47481 * 300.00513 * 15 14 12 17 17 C 1.53001 * 109.46829 * 60.00275 * 15 14 12 18 18 C 1.52995 * 109.47427 * 179.97438 * 15 14 12 19 19 N 1.46503 * 109.47393 * 180.02562 * 18 15 14 20 20 C 1.36936 * 119.99889 * 180.02562 * 19 18 15 21 21 H 1.07996 * 120.00380 * 359.97438 * 20 19 18 22 22 C 1.38809 * 119.99703 * 180.02562 * 20 19 18 23 23 N 1.31617 * 120.00285 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00110 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46931 * 59.99781 * 24 22 20 26 26 H 1.48500 * 109.47159 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46990 * 299.99945 * 24 22 20 28 28 H 1.08996 * 109.47352 * 300.00228 * 1 2 3 29 29 H 1.09001 * 109.46424 * 60.00198 * 1 2 3 30 30 H 1.08997 * 109.47296 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47352 * 239.99772 * 2 1 3 32 32 H 1.08999 * 109.47006 * 299.99908 * 3 2 1 33 33 H 1.09010 * 109.47059 * 59.99551 * 3 2 1 34 34 H 1.09000 * 109.48001 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47166 * 149.68974 * 9 8 7 36 36 H 1.08994 * 109.47507 * 29.68681 * 9 8 7 37 37 H 1.08998 * 109.46921 * 89.99095 * 13 12 10 38 38 H 1.08994 * 109.46996 * 209.99677 * 13 12 10 39 39 H 1.09001 * 109.46578 * 329.99540 * 13 12 10 40 40 H 1.09001 * 109.47567 * 210.00057 * 14 12 10 41 41 H 1.09005 * 109.47076 * 330.00563 * 14 12 10 42 42 H 1.08998 * 109.46857 * 59.99368 * 16 15 14 43 43 H 1.08993 * 109.46968 * 179.97438 * 16 15 14 44 44 H 1.08996 * 109.46881 * 299.99845 * 16 15 14 45 45 H 1.09001 * 109.47207 * 60.00301 * 17 15 14 46 46 H 1.09002 * 109.47399 * 179.97438 * 17 15 14 47 47 H 1.08998 * 109.47342 * 299.99886 * 17 15 14 48 48 H 1.09006 * 109.47343 * 300.00688 * 18 15 14 49 49 H 1.09005 * 109.46868 * 60.00504 * 18 15 14 50 50 H 0.96998 * 119.99783 * 0.02562 * 19 18 15 51 51 H 0.96997 * 120.00450 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 7 1.7968 -0.3788 2.4766 6 7 2.3978 -1.2293 3.2351 7 7 3.0060 -2.0981 2.5053 8 7 2.8093 -1.8090 1.2633 9 6 3.3287 -2.5423 0.1064 10 6 4.6669 -1.9733 -0.2894 11 8 5.1402 -1.0467 0.3338 12 7 5.3404 -2.4979 -1.3323 13 6 4.7689 -3.6175 -2.0849 14 6 6.6439 -1.9487 -1.7134 15 6 7.7496 -2.6878 -0.9570 16 6 7.5427 -2.5123 0.5487 17 6 7.7008 -4.1761 -1.3084 18 6 9.1111 -2.1148 -1.3555 19 7 10.1699 -2.8229 -0.6317 20 6 11.4809 -2.4796 -0.8278 21 1 11.7345 -1.6872 -1.5163 22 6 12.4841 -3.1509 -0.1424 23 7 12.1751 -4.1170 0.6964 24 14 14.2726 -2.6832 -0.4104 25 1 14.4734 -1.2600 -0.0369 26 1 15.1409 -3.5431 0.4333 27 1 14.6253 -2.8743 -1.8402 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 2.6325 -2.4468 -0.7268 36 1 3.4437 -3.5948 0.3651 37 1 4.1627 -3.2322 -2.9048 38 1 5.5733 -4.2338 -2.4861 39 1 4.1454 -4.2191 -1.4236 40 1 6.7914 -2.0738 -2.7861 41 1 6.6788 -0.8884 -1.4630 42 1 6.5728 -2.9209 0.8322 43 1 8.3302 -3.0393 1.0875 44 1 7.5775 -1.4521 0.7991 45 1 7.8483 -4.3012 -2.3812 46 1 8.4888 -4.7027 -0.7700 47 1 6.7309 -4.5848 -1.0249 48 1 9.2583 -2.2402 -2.4283 49 1 9.1462 -1.0544 -1.1054 50 1 9.9421 -3.5349 -0.0136 51 1 12.8761 -4.5859 1.1756 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505839663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:20 Heat of formation + Delta-G solvation = 66.693518 kcal Electronic energy + Delta-G solvation = -30862.278888 eV Core-core repulsion = 26834.105658 eV Total energy + Delta-G solvation = -4028.173230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.29077 -41.47017 -38.91948 -37.15751 -36.57793 -36.40149 -34.93774 -32.60111 -32.24882 -30.43548 -28.85890 -28.11147 -28.10677 -27.32111 -26.59965 -25.47846 -24.78502 -23.96788 -21.79705 -20.84779 -19.90025 -19.20067 -18.91918 -18.55897 -17.45476 -17.31208 -16.98311 -16.63412 -16.23796 -15.85365 -15.57593 -15.46724 -15.16668 -14.74522 -14.47566 -14.33319 -14.20605 -14.16686 -13.94455 -13.73988 -13.67352 -13.20903 -13.18599 -13.09400 -12.97060 -12.78059 -12.68558 -12.58176 -12.51187 -12.44653 -12.29836 -12.27671 -12.26652 -12.16657 -11.89342 -11.69054 -11.66609 -11.54354 -11.15836 -10.94770 -10.85465 -9.67865 -8.99472 -7.96439 -5.24377 0.10422 0.85698 1.13951 1.34730 1.44269 1.47865 1.53794 1.91741 2.54666 2.88618 3.14601 3.19690 3.36796 3.58453 3.80387 3.82619 3.87292 3.93533 4.02082 4.05922 4.18856 4.24433 4.34624 4.38154 4.44535 4.51565 4.64370 4.67662 4.77162 4.77620 4.82860 4.84244 4.88299 4.91008 4.91638 4.95099 5.02009 5.11879 5.15400 5.15456 5.16866 5.28586 5.36977 5.39544 5.45524 5.46867 5.55607 6.24371 6.25918 6.95804 7.32355 7.49204 8.10122 8.32755 9.27146 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.019488 B = 0.002439 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.410948 B =11477.856126 C =11799.129248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.009 4.009 3 C -0.142 4.142 4 C 0.208 3.792 5 N -0.331 5.331 6 N -0.110 5.110 7 N -0.107 5.107 8 N -0.291 5.291 9 C 0.087 3.913 10 C 0.493 3.507 11 O -0.567 6.567 12 N -0.592 5.592 13 C 0.049 3.951 14 C 0.138 3.862 15 C -0.077 4.077 16 C -0.106 4.106 17 C -0.127 4.127 18 C 0.162 3.838 19 N -0.740 5.740 20 C -0.244 4.244 21 H 0.075 0.925 22 C -0.077 4.077 23 N -0.971 5.971 24 Si 0.974 3.026 25 H -0.282 1.282 26 H -0.296 1.296 27 H -0.273 1.273 28 H 0.052 0.948 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.053 0.947 34 H 0.036 0.964 35 H 0.194 0.806 36 H 0.167 0.833 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.024 0.976 44 H 0.027 0.973 45 H 0.070 0.930 46 H 0.026 0.974 47 H 0.078 0.922 48 H 0.034 0.966 49 H 0.004 0.996 50 H 0.375 0.625 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.590 1.868 -13.784 32.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 C -0.201 4.201 4 C -0.070 4.070 5 N -0.180 5.180 6 N -0.104 5.104 7 N -0.093 5.093 8 N -0.092 5.092 9 C -0.036 4.036 10 C 0.279 3.721 11 O -0.445 6.445 12 N -0.323 5.323 13 C -0.092 4.092 14 C 0.015 3.985 15 C -0.078 4.078 16 C -0.163 4.163 17 C -0.184 4.184 18 C 0.035 3.965 19 N -0.384 5.384 20 C -0.376 4.376 21 H 0.092 0.908 22 C -0.269 4.269 23 N -0.622 5.622 24 Si 0.802 3.198 25 H -0.208 1.208 26 H -0.222 1.222 27 H -0.199 1.199 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.211 0.789 36 H 0.185 0.815 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.132 0.868 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.043 0.957 44 H 0.047 0.953 45 H 0.089 0.911 46 H 0.045 0.955 47 H 0.096 0.904 48 H 0.052 0.948 49 H 0.022 0.978 50 H 0.208 0.792 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -29.093 2.252 -12.123 31.598 hybrid contribution 1.863 -0.048 0.201 1.874 sum -27.230 2.204 -11.921 29.807 Atomic orbital electron populations 1.21852 0.90295 1.03411 1.04153 1.20124 0.98462 0.95800 0.88642 1.21823 1.00303 0.93859 1.04091 1.26846 0.93568 0.88240 0.98301 1.74842 1.21723 1.21501 0.99942 1.78571 1.08185 0.99875 1.23753 1.78813 1.19312 1.22314 0.88817 1.48148 1.33251 1.21054 1.06710 1.22619 0.95503 0.99033 0.86493 1.20767 0.87081 0.83545 0.80731 1.90859 1.69678 1.30890 1.53111 1.47730 1.18963 1.35051 1.30585 1.22542 1.00940 0.87973 0.97744 1.21384 0.80100 0.97206 0.99821 1.21036 0.94392 0.97433 0.94988 1.21524 0.99197 0.99545 0.96082 1.21821 1.01449 0.93440 1.01719 1.20751 0.87172 0.93636 0.94901 1.42585 1.01901 1.42349 1.51526 1.19610 0.84629 1.13900 1.19501 0.90751 1.25565 1.02196 0.99249 0.99914 1.69812 1.32822 1.27171 1.32379 0.85209 0.79887 0.77083 0.77572 1.20846 1.22221 1.19895 0.92859 0.87994 0.91475 0.85750 0.87824 0.92750 0.94452 0.78881 0.81514 0.88431 0.89423 0.88436 0.86775 0.91682 0.93288 0.95728 0.95340 0.91113 0.95486 0.90369 0.94844 0.97776 0.79153 0.94069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.18 71.98 0.66 -0.29 16 2 C -0.01 -0.09 3.26 -11.54 -0.04 -0.13 16 3 C -0.14 -1.89 9.18 71.98 0.66 -1.23 16 4 C 0.21 4.33 6.64 138.13 0.92 5.25 16 5 N -0.33 -9.61 12.36 -50.44 -0.62 -10.24 16 6 N -0.11 -3.68 13.43 37.01 0.50 -3.19 16 7 N -0.11 -3.17 13.29 37.02 0.49 -2.68 16 8 N -0.29 -6.07 2.83 -341.99 -0.97 -7.04 16 9 C 0.09 0.87 5.12 85.64 0.44 1.31 16 10 C 0.49 9.09 6.15 87.66 0.54 9.63 16 11 O -0.57 -17.50 14.20 -3.04 -0.04 -17.55 16 12 N -0.59 -8.26 2.40 -846.74 -2.03 -10.29 16 13 C 0.05 0.16 9.15 127.77 1.17 1.32 16 14 C 0.14 2.91 4.60 86.38 0.40 3.30 16 15 C -0.08 -2.33 0.60 -52.18 -0.03 -2.36 16 16 C -0.11 -3.93 6.97 71.98 0.50 -3.43 16 17 C -0.13 -3.39 7.05 71.98 0.51 -2.89 16 18 C 0.16 6.44 5.15 86.38 0.44 6.89 16 19 N -0.74 -38.20 5.00 -343.45 -1.72 -39.92 16 20 C -0.24 -13.94 9.99 84.03 0.84 -13.10 16 21 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 22 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 23 N -0.97 -60.88 13.06 21.65 0.28 -60.60 16 24 Si 0.97 47.12 29.55 68.60 2.03 49.15 16 25 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 26 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 27 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.12 0.44 6.85 -2.39 -0.02 0.42 16 32 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.19 -0.39 7.10 -2.38 -0.02 -0.40 16 36 H 0.17 0.85 7.40 -2.39 -0.02 0.84 16 37 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 38 H 0.09 0.42 6.05 -2.39 -0.01 0.40 16 39 H 0.10 -0.18 6.43 -2.39 -0.02 -0.20 16 40 H 0.11 1.71 8.07 -2.39 -0.02 1.69 16 41 H 0.06 1.69 7.42 -2.38 -0.02 1.67 16 42 H 0.05 1.64 6.15 -2.39 -0.01 1.63 16 43 H 0.02 1.06 6.86 -2.39 -0.02 1.04 16 44 H 0.03 1.17 7.73 -2.39 -0.02 1.15 16 45 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 46 H 0.03 0.95 6.86 -2.39 -0.02 0.93 16 47 H 0.08 1.54 5.99 -2.39 -0.01 1.53 16 48 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 49 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 50 H 0.38 20.71 5.36 -92.71 -0.50 20.22 16 51 H 0.25 15.27 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -90.65 401.73 5.83 -84.83 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.44 Total: 17.35 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 7.47 Total: 0.19 kcal Atomic # 7 Polarization: -129.89 SS G_CDS: -4.07 Total: -133.96 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.04 Total: -17.55 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -90.65 5.83 -84.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505839663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.519 kcal (2) G-P(sol) polarization free energy of solvation -90.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds