Wall clock time and date at job start Tue Mar 31 2020 21:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00248 * 2 1 4 4 H 1.48493 * 109.47204 * 240.00100 * 3 2 1 5 5 H 1.48505 * 109.46787 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47087 * 119.99516 * 3 2 1 7 7 C 1.38815 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00649 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00103 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47300 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47496 * 180.02562 * 11 10 9 13 13 O 1.42899 * 109.47450 * 179.97438 * 12 11 10 14 14 C 1.42895 * 114.00013 * 179.97438 * 13 12 11 15 15 C 1.53042 * 109.45967 * 210.00110 * 14 13 12 16 16 C 1.53193 * 109.31150 * 178.62842 * 15 14 13 17 17 N 1.46928 * 108.77498 * 54.63939 * 16 15 14 18 18 C 1.34774 * 120.63160 * 126.37025 * 17 16 15 19 19 O 1.21282 * 120.00144 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99806 * 179.97438 * 18 17 16 21 21 C 1.53001 * 109.46781 * 179.97438 * 20 18 17 22 22 C 1.54887 * 110.75563 * 175.00174 * 21 20 18 23 23 C 1.54266 * 104.19888 * 156.25362 * 22 21 20 24 24 C 1.53872 * 106.59640 * 336.38805 * 23 22 21 25 25 C 1.54266 * 106.60044 * 359.97438 * 24 23 22 26 26 C 1.46925 * 118.73501 * 306.63730 * 17 16 15 27 27 C 1.52761 * 109.00582 * 53.31230 * 26 17 16 28 28 H 0.97000 * 120.00316 * 0.02562 * 1 2 3 29 29 H 0.97004 * 120.00009 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47520 * 60.00049 * 10 9 7 31 31 H 1.09000 * 109.47537 * 300.00036 * 10 9 7 32 32 H 1.09003 * 109.47242 * 59.99517 * 11 10 9 33 33 H 1.09004 * 109.47384 * 299.99683 * 11 10 9 34 34 H 1.09003 * 109.47318 * 59.99504 * 12 11 10 35 35 H 1.09005 * 109.47112 * 299.99728 * 12 11 10 36 36 H 1.09000 * 109.46315 * 329.97083 * 14 13 12 37 37 H 1.09000 * 109.49867 * 58.67689 * 15 14 13 38 38 H 1.09003 * 109.52759 * 298.59868 * 15 14 13 39 39 H 1.09000 * 109.59140 * 294.84595 * 16 15 14 40 40 H 1.09008 * 109.69951 * 174.49421 * 16 15 14 41 41 H 1.09000 * 109.47143 * 59.99965 * 20 18 17 42 42 H 1.08996 * 109.47134 * 299.99303 * 20 18 17 43 43 H 1.09000 * 110.82181 * 51.66151 * 21 20 18 44 44 H 1.09001 * 110.48816 * 37.57288 * 22 21 20 45 45 H 1.09004 * 110.48531 * 274.93503 * 22 21 20 46 46 H 1.09003 * 110.03179 * 95.67576 * 23 22 21 47 47 H 1.09005 * 110.03005 * 217.10316 * 23 22 21 48 48 H 1.09002 * 110.03208 * 119.28196 * 24 23 22 49 49 H 1.08996 * 110.03362 * 240.71095 * 24 23 22 50 50 H 1.09002 * 110.48438 * 142.28717 * 25 24 23 51 51 H 1.08998 * 110.48431 * 264.79545 * 25 24 23 52 52 H 1.08994 * 109.58274 * 173.14929 * 26 17 16 53 53 H 1.08995 * 109.58887 * 293.57077 * 26 17 16 54 54 H 1.09000 * 109.56088 * 185.54951 * 27 26 17 55 55 H 1.08997 * 109.38791 * 65.51443 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8288 -6.1448 0.0018 13 8 0.9003 -7.2309 0.0030 14 6 1.5148 -8.5210 0.0031 15 6 0.6054 -9.5190 -0.7172 16 6 1.2826 -10.8928 -0.7452 17 7 1.6302 -11.2768 0.6298 18 6 1.2261 -12.4588 1.1357 19 8 0.5686 -13.2170 0.4546 20 6 1.5913 -12.8384 2.5476 21 6 1.0130 -14.2177 2.8706 22 6 1.4751 -14.6925 4.2706 23 6 0.3968 -15.7085 4.7005 24 6 -0.8757 -15.3604 3.9086 25 6 -0.5266 -14.1445 3.0257 26 6 2.4217 -10.3450 1.4447 27 6 1.7364 -8.9798 1.4462 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.6848 -3.7146 0.8905 31 1 2.6848 -3.7146 -0.8894 32 1 0.4368 -4.7622 -0.8885 33 1 0.4375 -4.7619 0.8914 34 1 2.4556 -6.2021 0.8918 35 1 2.4554 -6.2030 -0.8882 36 1 2.4739 -8.4664 -0.5119 37 1 0.4290 -9.1795 -1.7379 38 1 -0.3453 -9.5927 -0.1890 39 1 2.1878 -10.8418 -1.3503 40 1 0.6008 -11.6301 -1.1692 41 1 1.1818 -12.1022 3.2393 42 1 2.6763 -12.8666 2.6472 43 1 1.2906 -14.9429 2.1057 44 1 1.5080 -13.8539 4.9662 45 1 2.4504 -15.1750 4.2071 46 1 0.7210 -16.7211 4.4601 47 1 0.2067 -15.6210 5.7702 48 1 -1.1692 -16.2040 3.2839 49 1 -1.6835 -15.1040 4.5940 50 1 -1.0119 -14.2274 2.0532 51 1 -0.8194 -13.2180 3.5194 52 1 2.4893 -10.7196 2.4660 53 1 3.4217 -10.2484 1.0218 54 1 2.3651 -8.2564 1.9654 55 1 0.7755 -9.0578 1.9547 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506488270.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:12 Heat of formation + Delta-G solvation = -121.368011 kcal Electronic energy + Delta-G solvation = -29041.834964 eV Core-core repulsion = 25076.754367 eV Total energy + Delta-G solvation = -3965.080597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.40617 -39.81156 -38.73981 -37.61950 -36.78201 -34.32575 -33.42579 -32.47504 -31.81195 -31.20686 -29.51084 -27.43255 -26.77227 -25.31685 -24.44832 -23.94494 -22.48778 -22.01942 -21.14351 -20.88745 -19.89892 -19.13109 -18.29542 -17.59906 -17.23834 -16.84165 -16.59322 -16.55987 -16.30229 -15.83775 -15.54962 -15.38473 -15.23724 -15.07291 -14.91488 -14.68847 -14.24288 -14.15607 -13.87024 -13.68890 -13.37387 -13.29564 -12.92304 -12.87778 -12.82018 -12.46132 -12.44278 -12.32538 -12.15267 -12.09940 -12.05930 -11.92608 -11.89339 -11.77976 -11.71538 -11.61096 -11.48056 -11.45275 -11.24242 -10.93250 -10.74273 -10.38409 -9.71806 -9.02746 -7.95702 -5.26119 1.48014 1.51864 1.58079 1.63816 1.99175 2.51205 2.66804 3.37893 3.45734 3.66819 3.72536 3.77574 3.82152 3.90704 4.00082 4.04459 4.09449 4.13425 4.29100 4.30231 4.32788 4.37034 4.39340 4.46645 4.56937 4.59934 4.62616 4.67074 4.71767 4.75016 4.77573 4.78002 4.81473 4.82165 4.85294 4.88577 4.94845 4.98305 5.10056 5.12934 5.13777 5.24166 5.25773 5.32937 5.33567 5.35580 5.48517 5.52571 5.53957 5.54713 6.25368 6.34473 6.39838 7.18669 7.31738 8.07183 8.30109 9.27890 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025116 B = 0.001460 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.568341 B =19172.956938 C =19558.920797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.979 3.021 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.252 4.252 8 H 0.080 0.920 9 N -0.750 5.750 10 C 0.156 3.844 11 C -0.114 4.114 12 C 0.078 3.922 13 O -0.403 6.403 14 C 0.085 3.915 15 C -0.126 4.126 16 C 0.117 3.883 17 N -0.616 5.616 18 C 0.509 3.491 19 O -0.582 6.582 20 C -0.128 4.128 21 C -0.077 4.077 22 C -0.115 4.115 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.120 4.120 26 C 0.110 3.890 27 C -0.155 4.155 28 H 0.252 0.748 29 H 0.373 0.627 30 H 0.028 0.972 31 H 0.026 0.974 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.121 0.879 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.055 0.945 49 H 0.065 0.935 50 H 0.045 0.955 51 H 0.063 0.937 52 H 0.114 0.886 53 H 0.092 0.908 54 H 0.091 0.909 55 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.551 -33.965 8.118 35.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.807 3.193 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.201 1.201 7 C -0.384 4.384 8 H 0.098 0.902 9 N -0.393 5.393 10 C 0.029 3.971 11 C -0.152 4.152 12 C 0.001 3.999 13 O -0.323 6.323 14 C 0.028 3.972 15 C -0.164 4.164 16 C -0.005 4.005 17 N -0.349 5.349 18 C 0.299 3.701 19 O -0.462 6.462 20 C -0.167 4.167 21 C -0.096 4.096 22 C -0.152 4.152 23 C -0.163 4.163 24 C -0.165 4.165 25 C -0.158 4.158 26 C -0.011 4.011 27 C -0.194 4.194 28 H 0.061 0.939 29 H 0.204 0.796 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.129 0.871 42 H 0.139 0.861 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.084 0.916 50 H 0.064 0.936 51 H 0.082 0.918 52 H 0.132 0.868 53 H 0.110 0.890 54 H 0.110 0.890 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.176 -34.245 7.766 35.841 hybrid contribution -0.414 1.210 -0.374 1.333 sum 6.762 -33.035 7.391 34.521 Atomic orbital electron populations 1.69827 1.06801 1.26277 1.59256 1.25657 0.96441 1.01401 1.03415 0.85139 0.77151 0.78686 0.78337 1.20199 1.22152 1.20107 1.19662 0.91689 0.85274 1.41730 0.90247 1.42604 1.05708 1.01404 1.89608 1.20668 0.93794 0.84388 0.98226 1.21487 0.98649 0.92977 1.02112 1.22349 0.91272 0.84929 1.01331 1.87916 1.34769 1.14378 1.95241 1.22203 0.96542 0.82361 0.96132 1.21917 0.98895 0.93842 1.01749 1.21506 1.00777 0.94916 0.83328 1.48334 1.54046 1.18100 1.14418 1.21348 0.78088 0.80410 0.90233 1.90671 1.40944 1.51893 1.62708 1.21807 1.04456 0.98673 0.91810 1.21867 0.94848 0.95188 0.97665 1.22421 0.98677 0.99158 0.94963 1.22135 0.94660 0.99366 1.00101 1.22146 0.98449 0.97623 0.98273 1.22398 0.96093 0.98386 0.98888 1.21855 0.94519 0.87425 0.97350 1.22342 1.02206 0.97735 0.97086 0.93948 0.79588 0.95379 0.95592 0.92529 0.92351 0.91643 0.92040 0.90373 0.89886 0.92608 0.89556 0.90217 0.87090 0.86132 0.91741 0.90192 0.90569 0.91819 0.90983 0.92647 0.91635 0.93644 0.91849 0.86780 0.88978 0.89037 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.37 13.06 21.65 0.28 -60.09 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 3 Si 0.98 46.06 29.55 68.60 2.03 48.09 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.25 -14.26 9.99 84.03 0.84 -13.42 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 9 N -0.75 -39.20 5.60 -343.46 -1.92 -41.12 16 10 C 0.16 6.16 6.26 86.38 0.54 6.70 16 11 C -0.11 -3.78 5.70 30.59 0.17 -3.60 16 12 C 0.08 1.91 5.75 71.98 0.41 2.32 16 13 O -0.40 -10.13 9.99 -148.98 -1.49 -11.62 16 14 C 0.09 1.48 2.57 30.62 0.08 1.56 16 15 C -0.13 -2.23 5.73 30.67 0.18 -2.06 16 16 C 0.12 1.86 6.44 86.36 0.56 2.41 16 17 N -0.62 -8.86 2.98 -819.73 -2.44 -11.30 16 18 C 0.51 8.87 7.53 87.66 0.66 9.53 16 19 O -0.58 -15.12 14.25 -3.04 -0.04 -15.17 16 20 C -0.13 -1.28 3.55 29.85 0.11 -1.17 16 21 C -0.08 -0.98 2.45 -9.49 -0.02 -1.01 16 22 C -0.11 -0.96 6.27 31.67 0.20 -0.76 16 23 C -0.13 -1.22 6.80 31.32 0.21 -1.01 16 24 C -0.13 -1.65 6.80 31.32 0.21 -1.44 16 25 C -0.12 -1.89 5.76 31.68 0.18 -1.71 16 26 C 0.11 0.94 6.31 86.22 0.54 1.49 16 27 C -0.16 -2.06 5.68 30.53 0.17 -1.89 16 28 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 29 H 0.37 20.86 7.67 -92.71 -0.71 20.14 16 30 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.07 1.37 7.84 -2.39 -0.02 1.35 16 35 H 0.06 1.35 8.08 -2.38 -0.02 1.33 16 36 H 0.08 1.11 7.79 -2.39 -0.02 1.10 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 1.57 7.00 -2.38 -0.02 1.55 16 41 H 0.11 0.78 7.53 -2.39 -0.02 0.76 16 42 H 0.12 0.57 7.95 -2.39 -0.02 0.55 16 43 H 0.06 1.09 7.88 -2.39 -0.02 1.07 16 44 H 0.08 0.50 8.05 -2.39 -0.02 0.48 16 45 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 46 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 48 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.04 0.97 7.38 -2.39 -0.02 0.95 16 51 H 0.06 0.94 7.94 -2.39 -0.02 0.92 16 52 H 0.11 0.44 5.93 -2.39 -0.01 0.43 16 53 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 54 H 0.09 1.06 7.84 -2.39 -0.02 1.05 16 55 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -73.39 424.86 2.05 -71.34 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.13 Total: 27.93 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 5.51 Total: -8.06 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -4.08 Total: -112.51 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -1.53 Total: -26.78 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -73.39 2.05 -71.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506488270.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.033 kcal (2) G-P(sol) polarization free energy of solvation -73.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds