Wall clock time and date at job start Tue Mar 31 2020 21:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 5 5 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 6 6 C 1.53000 * 109.47060 * 59.99960 * 4 2 1 7 7 C 1.53006 * 109.46846 * 185.00166 * 6 4 2 8 8 N 1.46497 * 109.46795 * 179.97438 * 7 6 4 9 9 C 1.34778 * 119.99736 * 179.97438 * 8 7 6 10 10 O 1.21537 * 120.00150 * 0.02562 * 9 8 7 11 11 C 1.48007 * 120.00140 * 180.02562 * 9 8 7 12 12 N 1.34188 * 126.69452 * 0.02562 * 11 9 8 13 13 N 1.28981 * 107.24877 * 179.97438 * 12 11 9 14 14 N 1.28718 * 108.99303 * 0.02562 * 13 12 11 15 15 C 1.46502 * 125.32699 * 180.02562 * 14 13 12 16 16 C 1.53005 * 109.46524 * 359.97101 * 15 14 13 17 17 C 1.52998 * 109.47455 * 119.97186 * 15 14 13 18 18 C 1.52994 * 109.47066 * 239.97587 * 15 14 13 19 19 N 1.28874 * 109.35400 * 359.76026 * 14 13 12 20 20 N 1.46500 * 109.47007 * 179.97438 * 4 2 1 21 21 C 1.36933 * 119.99983 * 84.99832 * 20 4 2 22 22 H 1.08002 * 120.00189 * 0.02562 * 21 20 4 23 23 C 1.38812 * 120.00422 * 179.97438 * 21 20 4 24 24 N 1.31621 * 120.00472 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99616 * 359.97438 * 23 21 20 26 26 H 1.48509 * 109.46627 * 90.00015 * 25 23 21 27 27 H 1.48499 * 109.47196 * 209.99956 * 25 23 21 28 28 H 1.48496 * 109.47418 * 330.00510 * 25 23 21 29 29 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 30 30 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 31 31 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46716 * 240.00370 * 2 1 3 33 33 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 35 35 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 36 36 H 1.09002 * 109.47069 * 304.99600 * 6 4 2 37 37 H 1.08991 * 109.47625 * 64.99919 * 6 4 2 38 38 H 1.09002 * 109.46824 * 299.99583 * 7 6 4 39 39 H 1.09001 * 109.47241 * 59.99481 * 7 6 4 40 40 H 0.96995 * 120.00714 * 0.02562 * 8 7 6 41 41 H 1.08995 * 109.47011 * 60.00571 * 16 15 14 42 42 H 1.09003 * 109.46745 * 180.02562 * 16 15 14 43 43 H 1.09001 * 109.47366 * 299.99914 * 16 15 14 44 44 H 1.08998 * 109.46916 * 60.00294 * 17 15 14 45 45 H 1.08993 * 109.47171 * 180.02562 * 17 15 14 46 46 H 1.09006 * 109.46699 * 300.00248 * 17 15 14 47 47 H 1.09001 * 109.47495 * 59.99675 * 18 15 14 48 48 H 1.09003 * 109.47105 * 179.97438 * 18 15 14 49 49 H 1.08998 * 109.47166 * 299.99621 * 18 15 14 50 50 H 0.96997 * 120.00274 * 264.99726 * 20 4 2 51 51 H 0.97001 * 119.99778 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2490 7 6 1.9349 -2.8479 2.5564 8 7 1.4460 -4.2289 2.5565 9 6 1.6868 -5.0289 3.6142 10 8 2.3091 -4.6044 4.5680 11 6 1.1935 -6.4243 3.6142 12 7 0.4975 -7.0287 2.6390 13 7 0.2637 -8.2361 3.0279 14 7 0.7797 -8.4077 4.1946 15 6 0.7256 -9.6492 4.9705 16 6 -0.0404 -10.7117 4.1797 17 6 2.1479 -10.1429 5.2428 18 6 0.0127 -9.3897 6.2991 19 7 1.3562 -7.3183 4.5711 20 7 3.5050 -0.7218 1.2488 21 6 4.1902 0.3528 1.7497 22 1 3.6506 1.2005 2.1454 23 6 5.5783 0.3522 1.7498 24 7 6.2369 1.3848 2.2318 25 14 6.5117 -1.1150 1.0674 26 1 6.7594 -0.9130 -0.3829 27 1 7.8091 -1.2500 1.7770 28 1 5.7085 -2.3483 1.2651 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 0.4437 -2.1651 1.1596 37 1 1.9645 -2.7028 0.4073 38 1 3.0212 -2.8466 2.6459 39 1 1.5003 -2.3089 3.3983 40 1 0.9497 -4.5679 1.7953 41 1 0.4675 -10.8967 3.2332 42 1 -0.0810 -11.6353 4.7572 43 1 -1.0537 -10.3601 3.9857 44 1 2.6936 -9.3859 5.8062 45 1 2.1077 -11.0667 5.8197 46 1 2.6558 -10.3278 4.2962 47 1 -1.0006 -9.0380 6.1051 48 1 -0.0279 -10.3135 6.8762 49 1 0.5583 -8.6327 6.8624 50 1 3.9897 -1.4833 0.8937 51 1 7.2069 1.3845 2.2315 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506985872.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:20 Heat of formation + Delta-G solvation = 90.914560 kcal Electronic energy + Delta-G solvation = -29572.029974 eV Core-core repulsion = 25544.907047 eV Total energy + Delta-G solvation = -4027.122927 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -44.68968 -39.63796 -38.08329 -37.58053 -34.95502 -33.76052 -33.04891 -32.81201 -31.28515 -29.97876 -28.25015 -28.17609 -26.62955 -26.08982 -24.82563 -24.49170 -22.54934 -21.26540 -21.17150 -20.80267 -19.40646 -18.22840 -17.67723 -17.39707 -17.04579 -15.95720 -15.59781 -15.04821 -14.87241 -14.66618 -14.48077 -14.18974 -14.01510 -13.82025 -13.56967 -13.51877 -13.25877 -13.11782 -12.99746 -12.56145 -12.51049 -12.47172 -12.27442 -12.14020 -11.88554 -11.76846 -11.61499 -11.38660 -11.30719 -11.26879 -11.01387 -10.83473 -10.75207 -10.60688 -10.52222 -10.31187 -10.17637 -10.04042 -9.87222 -9.39366 -9.04783 -8.82461 -7.21532 -5.71891 -3.06531 0.78599 1.26509 1.35091 2.72888 3.03842 3.41963 3.44912 3.50574 3.58524 3.85726 3.88594 3.99914 4.34225 4.64063 4.78221 4.81309 4.82228 4.97774 5.00486 5.02439 5.03057 5.11251 5.17159 5.27813 5.39397 5.42880 5.47000 5.50016 5.57642 5.60350 5.66721 5.80956 5.81616 5.92578 6.03862 6.13030 6.23892 6.25785 6.39586 6.43006 6.52052 6.62677 6.67993 6.80311 7.08232 7.33760 7.40114 7.90766 8.04749 8.06313 8.46818 9.25331 9.97931 10.17123 11.46200 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.014682 B = 0.002396 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.589945 B =11685.254093 C =12910.858695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.191 3.809 5 H 0.059 0.941 6 C -0.141 4.141 7 C 0.121 3.879 8 N -0.704 5.704 9 C 0.610 3.390 10 O -0.503 6.503 11 C 0.130 3.870 12 N -0.258 5.258 13 N -0.057 5.057 14 N -0.126 5.126 15 C 0.176 3.824 16 C -0.153 4.153 17 C -0.161 4.161 18 C -0.161 4.161 19 N -0.245 5.245 20 N -0.747 5.747 21 C -0.235 4.235 22 H 0.094 0.906 23 C 0.005 3.995 24 N -0.933 5.933 25 Si 0.880 3.120 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.277 1.277 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.029 0.971 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.407 0.593 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.080 0.920 50 H 0.360 0.640 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.343 -24.928 2.983 29.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.198 4.198 4 C 0.080 3.920 5 H 0.077 0.923 6 C -0.179 4.179 7 C 0.000 4.000 8 N -0.356 5.356 9 C 0.389 3.611 10 O -0.374 6.374 11 C -0.155 4.155 12 N -0.133 5.133 13 N -0.049 5.049 14 N -0.041 5.041 15 C 0.096 3.904 16 C -0.211 4.211 17 C -0.220 4.220 18 C -0.219 4.219 19 N -0.098 5.098 20 N -0.389 5.389 21 C -0.365 4.365 22 H 0.112 0.888 23 C -0.191 4.191 24 N -0.581 5.581 25 Si 0.710 3.290 26 H -0.213 1.213 27 H -0.219 1.219 28 H -0.204 1.204 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.242 0.758 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.111 0.889 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.111 0.889 49 H 0.099 0.901 50 H 0.193 0.807 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.070 -24.889 3.619 29.847 hybrid contribution 0.801 -0.808 -0.754 1.365 sum -15.269 -25.697 2.865 30.028 Atomic orbital electron populations 1.21938 0.96874 1.00706 1.01000 1.21732 0.93558 0.97961 0.99887 1.21834 1.04457 0.94444 0.99050 1.20171 0.84683 0.91038 0.96065 0.92278 1.22204 1.01338 0.98134 0.96247 1.21617 1.01190 0.78195 0.99048 1.45836 1.56790 1.13617 1.19366 1.16130 0.80299 0.80772 0.83913 1.90896 1.38979 1.73342 1.34181 1.25439 1.02265 0.98560 0.89195 1.76123 1.14464 0.98917 1.23785 1.78854 1.15839 1.12272 0.97970 1.50763 1.30867 1.10861 1.11575 1.21536 0.99782 0.77616 0.91486 1.22112 1.01138 0.96927 1.00928 1.22272 0.92691 1.03199 1.03811 1.22266 1.01059 1.04568 0.94014 1.75010 1.16174 0.93469 1.25101 1.42836 1.00537 1.20495 1.75068 1.19046 0.89255 0.95930 1.32267 0.88833 1.24647 0.96235 0.97053 1.01166 1.69691 1.06936 1.29877 1.51628 0.86626 0.79961 0.83638 0.78742 1.21305 1.21939 1.20351 0.93087 0.93674 0.93162 0.92267 0.89294 0.95208 0.93824 0.90722 0.91474 0.89687 0.90741 0.75753 0.90472 0.89034 0.90478 0.90103 0.88891 0.91247 0.91263 0.88895 0.90125 0.80703 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.85 37.16 0.33 -1.60 16 2 C -0.11 -1.79 2.69 -90.63 -0.24 -2.03 16 3 C -0.14 -2.58 8.26 37.15 0.31 -2.27 16 4 C 0.19 3.36 2.02 -67.93 -0.14 3.22 16 5 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 6 C -0.14 -1.98 4.65 -26.73 -0.12 -2.10 16 7 C 0.12 1.89 5.56 -4.04 -0.02 1.87 16 8 N -0.70 -9.75 5.55 -61.19 -0.34 -10.09 16 9 C 0.61 9.79 7.84 -12.25 -0.10 9.70 16 10 O -0.50 -9.90 17.10 5.33 0.09 -9.81 16 11 C 0.13 1.88 8.14 -156.25 -1.27 0.61 16 12 N -0.26 -3.44 12.26 32.10 0.39 -3.04 16 13 N -0.06 -0.67 12.21 60.35 0.74 0.07 16 14 N -0.13 -1.34 3.72 0.52 0.00 -1.33 16 15 C 0.18 1.09 1.30 -131.82 -0.17 0.92 16 16 C -0.15 -0.62 7.90 37.16 0.29 -0.32 16 17 C -0.16 -0.83 8.66 37.16 0.32 -0.51 16 18 C -0.16 -0.79 8.66 37.15 0.32 -0.46 16 19 N -0.24 -3.32 11.85 32.11 0.38 -2.94 16 20 N -0.75 -16.50 4.26 -53.43 -0.23 -16.72 16 21 C -0.24 -6.28 8.05 -15.06 -0.12 -6.40 16 22 H 0.09 2.68 7.63 -52.49 -0.40 2.28 16 23 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 24 N -0.93 -29.03 13.97 55.49 0.78 -28.25 16 25 Si 0.88 22.18 27.73 -169.99 -4.71 17.47 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 28 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.57 6.32 -51.93 -0.33 0.25 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.97 6.01 -51.93 -0.31 1.65 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.87 6.17 -51.93 -0.32 0.55 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.60 7.75 -51.93 -0.40 1.19 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.41 4.64 8.22 -40.82 -0.34 4.31 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 49 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.36 8.00 5.66 -40.82 -0.23 7.77 16 51 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 411.89 15.07 6.21 6.21 Total: -1.00 -34.02 411.89 -6.09 -40.10 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -8.68 Total: 7.70 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.71 Total: 0.65 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: 1.72 Total: -62.31 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.02 -6.09 -40.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506985872.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.019 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds