Wall clock time and date at job start Tue Mar 31 2020 21:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 5 5 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 6 6 C 1.53000 * 109.47060 * 59.99960 * 4 2 1 7 7 C 1.53006 * 109.46846 * 185.00166 * 6 4 2 8 8 N 1.46497 * 109.46795 * 179.97438 * 7 6 4 9 9 C 1.34778 * 119.99736 * 179.97438 * 8 7 6 10 10 O 1.21537 * 120.00150 * 0.02562 * 9 8 7 11 11 C 1.48007 * 120.00140 * 180.02562 * 9 8 7 12 12 N 1.34188 * 126.69452 * 0.02562 * 11 9 8 13 13 N 1.28981 * 107.24877 * 179.97438 * 12 11 9 14 14 N 1.28718 * 108.99303 * 0.02562 * 13 12 11 15 15 C 1.46502 * 125.32699 * 180.02562 * 14 13 12 16 16 C 1.53005 * 109.46524 * 359.97101 * 15 14 13 17 17 C 1.52998 * 109.47455 * 119.97186 * 15 14 13 18 18 C 1.52994 * 109.47066 * 239.97587 * 15 14 13 19 19 N 1.28874 * 109.35400 * 359.76026 * 14 13 12 20 20 N 1.46500 * 109.47007 * 179.97438 * 4 2 1 21 21 C 1.36933 * 119.99983 * 84.99832 * 20 4 2 22 22 H 1.08002 * 120.00189 * 0.02562 * 21 20 4 23 23 C 1.38812 * 120.00422 * 179.97438 * 21 20 4 24 24 N 1.31621 * 120.00472 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99616 * 359.97438 * 23 21 20 26 26 H 1.48509 * 109.46627 * 90.00015 * 25 23 21 27 27 H 1.48499 * 109.47196 * 209.99956 * 25 23 21 28 28 H 1.48496 * 109.47418 * 330.00510 * 25 23 21 29 29 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 30 30 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 31 31 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46716 * 240.00370 * 2 1 3 33 33 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 35 35 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 36 36 H 1.09002 * 109.47069 * 304.99600 * 6 4 2 37 37 H 1.08991 * 109.47625 * 64.99919 * 6 4 2 38 38 H 1.09002 * 109.46824 * 299.99583 * 7 6 4 39 39 H 1.09001 * 109.47241 * 59.99481 * 7 6 4 40 40 H 0.96995 * 120.00714 * 0.02562 * 8 7 6 41 41 H 1.08995 * 109.47011 * 60.00571 * 16 15 14 42 42 H 1.09003 * 109.46745 * 180.02562 * 16 15 14 43 43 H 1.09001 * 109.47366 * 299.99914 * 16 15 14 44 44 H 1.08998 * 109.46916 * 60.00294 * 17 15 14 45 45 H 1.08993 * 109.47171 * 180.02562 * 17 15 14 46 46 H 1.09006 * 109.46699 * 300.00248 * 17 15 14 47 47 H 1.09001 * 109.47495 * 59.99675 * 18 15 14 48 48 H 1.09003 * 109.47105 * 179.97438 * 18 15 14 49 49 H 1.08998 * 109.47166 * 299.99621 * 18 15 14 50 50 H 0.96997 * 120.00274 * 264.99726 * 20 4 2 51 51 H 0.97001 * 119.99778 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2490 7 6 1.9349 -2.8479 2.5564 8 7 1.4460 -4.2289 2.5565 9 6 1.6868 -5.0289 3.6142 10 8 2.3091 -4.6044 4.5680 11 6 1.1935 -6.4243 3.6142 12 7 0.4975 -7.0287 2.6390 13 7 0.2637 -8.2361 3.0279 14 7 0.7797 -8.4077 4.1946 15 6 0.7256 -9.6492 4.9705 16 6 -0.0404 -10.7117 4.1797 17 6 2.1479 -10.1429 5.2428 18 6 0.0127 -9.3897 6.2991 19 7 1.3562 -7.3183 4.5711 20 7 3.5050 -0.7218 1.2488 21 6 4.1902 0.3528 1.7497 22 1 3.6506 1.2005 2.1454 23 6 5.5783 0.3522 1.7498 24 7 6.2369 1.3848 2.2318 25 14 6.5117 -1.1150 1.0674 26 1 6.7594 -0.9130 -0.3829 27 1 7.8091 -1.2500 1.7770 28 1 5.7085 -2.3483 1.2651 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 0.4437 -2.1651 1.1596 37 1 1.9645 -2.7028 0.4073 38 1 3.0212 -2.8466 2.6459 39 1 1.5003 -2.3089 3.3983 40 1 0.9497 -4.5679 1.7953 41 1 0.4675 -10.8967 3.2332 42 1 -0.0810 -11.6353 4.7572 43 1 -1.0537 -10.3601 3.9857 44 1 2.6936 -9.3859 5.8062 45 1 2.1077 -11.0667 5.8197 46 1 2.6558 -10.3278 4.2962 47 1 -1.0006 -9.0380 6.1051 48 1 -0.0279 -10.3135 6.8762 49 1 0.5583 -8.6327 6.8624 50 1 3.9897 -1.4833 0.8937 51 1 7.2069 1.3845 2.2315 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506985872.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:19 Heat of formation + Delta-G solvation = 65.901495 kcal Electronic energy + Delta-G solvation = -29573.114622 eV Core-core repulsion = 25544.907047 eV Total energy + Delta-G solvation = -4028.207575 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.63994 -40.90802 -39.08989 -38.63380 -36.27787 -34.91218 -34.70745 -33.76017 -32.91281 -31.59312 -28.68752 -28.56075 -27.90510 -27.39580 -25.89765 -25.62409 -24.27474 -22.55082 -22.31773 -21.69152 -20.90834 -19.52545 -19.07653 -18.59837 -17.75116 -17.26512 -17.06785 -16.47901 -15.89046 -15.73251 -15.33567 -15.30046 -15.20836 -15.10586 -14.98263 -14.65151 -14.50131 -14.08198 -13.80502 -13.50911 -13.38245 -13.31580 -13.24436 -12.94378 -12.90210 -12.86570 -12.67610 -12.66300 -12.48851 -12.39486 -12.22413 -12.14714 -12.13653 -12.01412 -11.90122 -11.77665 -11.58924 -11.51198 -11.36292 -11.20374 -10.81217 -10.31467 -9.19561 -7.93861 -5.23635 -0.20311 0.21210 0.60402 1.38126 1.41020 1.46963 1.62900 1.82715 2.53109 2.74513 2.92314 3.37747 3.46323 3.54710 3.62194 3.66057 3.86725 3.94189 4.12709 4.22151 4.27610 4.38869 4.40837 4.47044 4.50495 4.56886 4.58475 4.67922 4.71409 4.71653 4.78018 4.79718 4.96095 5.00447 5.01541 5.08894 5.09022 5.15158 5.20877 5.21099 5.22706 5.30234 5.38815 5.46253 5.71111 5.80633 5.90799 6.18147 6.30283 6.81893 6.99918 7.17551 7.94389 8.11390 9.28001 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.014682 B = 0.002396 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.589945 B =11685.254093 C =12910.858695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C -0.138 4.138 4 C 0.183 3.817 5 H 0.045 0.955 6 C -0.126 4.126 7 C 0.128 3.872 8 N -0.685 5.685 9 C 0.611 3.389 10 O -0.549 6.549 11 C 0.115 3.885 12 N -0.262 5.262 13 N -0.055 5.055 14 N -0.109 5.109 15 C 0.159 3.841 16 C -0.149 4.149 17 C -0.159 4.159 18 C -0.158 4.158 19 N -0.260 5.260 20 N -0.749 5.749 21 C -0.198 4.198 22 H 0.064 0.936 23 C -0.069 4.069 24 N -0.987 5.987 25 Si 0.942 3.058 26 H -0.280 1.280 27 H -0.307 1.307 28 H -0.256 1.256 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.033 0.967 36 H 0.112 0.888 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.423 0.577 41 H 0.070 0.930 42 H 0.127 0.873 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.130 0.870 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.129 0.871 49 H 0.061 0.939 50 H 0.363 0.637 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.050 -28.596 1.804 34.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.195 4.195 4 C 0.074 3.926 5 H 0.063 0.937 6 C -0.164 4.164 7 C 0.005 3.995 8 N -0.337 5.337 9 C 0.391 3.609 10 O -0.423 6.423 11 C -0.169 4.169 12 N -0.137 5.137 13 N -0.047 5.047 14 N -0.026 5.026 15 C 0.081 3.919 16 C -0.207 4.207 17 C -0.217 4.217 18 C -0.216 4.216 19 N -0.114 5.114 20 N -0.392 5.392 21 C -0.329 4.329 22 H 0.082 0.918 23 C -0.260 4.260 24 N -0.640 5.640 25 Si 0.771 3.229 26 H -0.207 1.207 27 H -0.234 1.234 28 H -0.181 1.181 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.130 0.870 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.261 0.739 41 H 0.089 0.911 42 H 0.145 0.855 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.148 0.852 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.148 0.852 49 H 0.080 0.920 50 H 0.196 0.804 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.872 -28.612 2.377 34.358 hybrid contribution 1.495 0.278 -0.324 1.555 sum -17.377 -28.335 2.053 33.302 Atomic orbital electron populations 1.21867 0.93587 1.02636 1.01692 1.21615 0.96206 0.95848 0.98831 1.21754 1.01465 0.96639 0.99638 1.20431 0.81975 0.93789 0.96372 0.93715 1.22093 1.03517 0.95136 0.95647 1.21416 0.99140 0.79120 0.99850 1.45621 1.56067 1.12729 1.19331 1.16325 0.79559 0.81445 0.83555 1.90869 1.41135 1.74422 1.35874 1.25086 1.03555 0.98136 0.90121 1.76082 1.14513 0.99370 1.23708 1.78783 1.15835 1.11636 0.98460 1.51329 1.28961 1.11115 1.11196 1.22231 1.01086 0.76504 0.92103 1.22182 1.00190 0.97402 1.00922 1.22320 0.91537 1.04180 1.03691 1.22311 1.00103 1.05873 0.93317 1.74978 1.16779 0.94297 1.25369 1.42878 1.02601 1.19071 1.74627 1.18970 0.89083 0.95738 1.29094 0.91804 1.25343 0.97488 0.99869 1.03264 1.69865 1.06706 1.32452 1.54936 0.85592 0.78096 0.81263 0.77927 1.20687 1.23420 1.18122 0.93130 0.92375 0.90595 0.91699 0.93724 0.93111 0.94779 0.87010 0.89906 0.93034 0.91588 0.73932 0.91119 0.85467 0.90918 0.92069 0.85200 0.91972 0.91720 0.85236 0.92028 0.80439 0.93879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.85 71.98 0.64 -2.48 16 2 C -0.10 -3.15 2.69 -10.80 -0.03 -3.18 16 3 C -0.14 -5.00 8.26 71.98 0.59 -4.41 16 4 C 0.18 6.19 2.02 44.99 0.09 6.28 16 5 H 0.04 1.66 8.08 -2.39 -0.02 1.64 16 6 C -0.13 -3.16 4.65 30.60 0.14 -3.02 16 7 C 0.13 3.84 5.56 86.38 0.48 4.32 16 8 N -0.68 -18.04 5.55 -465.80 -2.59 -20.63 16 9 C 0.61 19.56 7.84 86.83 0.68 20.24 16 10 O -0.55 -22.16 17.10 -3.83 -0.07 -22.22 16 11 C 0.11 3.27 8.14 137.15 1.12 4.39 16 12 N -0.26 -6.65 12.26 -52.37 -0.64 -7.30 16 13 N -0.05 -1.22 12.21 37.02 0.45 -0.77 16 14 N -0.11 -2.20 3.72 -152.26 -0.57 -2.76 16 15 C 0.16 1.64 1.30 3.60 0.00 1.65 16 16 C -0.15 -0.76 7.90 71.98 0.57 -0.19 16 17 C -0.16 -1.32 8.66 71.98 0.62 -0.70 16 18 C -0.16 -1.20 8.66 71.98 0.62 -0.58 16 19 N -0.26 -6.99 11.85 -52.32 -0.62 -7.61 16 20 N -0.75 -32.93 4.26 -322.94 -1.37 -34.30 16 21 C -0.20 -10.86 8.05 84.03 0.68 -10.18 16 22 H 0.06 3.85 7.63 -2.91 -0.02 3.83 16 23 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 24 N -0.99 -64.25 13.97 21.65 0.30 -63.95 16 25 Si 0.94 46.87 27.73 68.60 1.90 48.77 16 26 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 27 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 28 H -0.26 -11.67 6.52 99.48 0.65 -11.03 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.32 6.32 -2.39 -0.02 1.31 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.04 2.01 6.01 -2.39 -0.01 1.99 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 35 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 2.06 6.17 -2.39 -0.01 2.05 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.05 1.93 7.75 -2.39 -0.02 1.91 16 39 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.42 8.55 8.22 -92.71 -0.76 7.79 16 41 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 43 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 46 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 47 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 49 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.36 15.68 5.66 -92.71 -0.52 15.16 16 51 H 0.25 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -79.25 411.89 3.07 -76.18 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: -0.41 Total: 26.07 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 6.68 Total: 8.51 kcal Atomic # 7 Polarization: -132.28 SS G_CDS: -5.04 Total: -137.32 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.07 Total: -22.22 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.90 Total: 48.77 kcal Total: -79.25 3.07 -76.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506985872.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.086 kcal (2) G-P(sol) polarization free energy of solvation -79.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds