Wall clock time and date at job start Tue Mar 31 2020 20:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42896 * 114.00423 * 2 1 4 4 C 1.53001 * 109.47115 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47182 * 179.60346 * 4 3 2 6 6 C 1.36742 * 127.13647 * 84.01186 * 5 4 3 7 7 C 1.50704 * 126.34840 * 359.97438 * 6 5 4 8 8 C 1.52998 * 109.47003 * 90.00360 * 7 6 5 9 9 C 1.50696 * 109.47163 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99960 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00309 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99861 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00373 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47263 * 179.97438 * 13 11 9 15 15 H 1.48503 * 109.47267 * 59.99656 * 13 11 9 16 16 H 1.48504 * 109.47269 * 299.99774 * 13 11 9 17 17 N 1.30294 * 107.30379 * 180.26718 * 6 5 4 18 18 N 1.28525 * 110.05344 * 359.55343 * 17 6 5 19 19 C 1.31215 * 109.86029 * 0.45938 * 18 17 6 20 20 N 1.38587 * 126.47461 * 179.72779 * 19 18 17 21 21 C 1.46895 * 110.99685 * 257.43683 * 20 19 18 22 22 C 1.46901 * 110.99577 * 21.38826 * 20 19 18 23 23 H 1.08991 * 112.85233 * 302.30122 * 22 20 19 24 24 C 1.53783 * 113.60912 * 171.10535 * 22 20 19 25 25 C 1.53785 * 87.07993 * 220.02065 * 24 22 20 26 26 C 1.53774 * 87.08018 * 25.43636 * 25 24 22 27 27 H 1.09002 * 113.61021 * 220.01857 * 26 25 24 28 28 O 1.42894 * 113.61464 * 89.11717 * 26 25 24 29 29 C 1.42906 * 114.00362 * 112.50088 * 28 26 25 30 30 H 1.09003 * 109.47199 * 59.99216 * 1 2 3 31 31 H 1.08998 * 109.47663 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.46763 * 299.99964 * 1 2 3 33 33 H 1.08997 * 109.46922 * 60.00488 * 3 2 1 34 34 H 1.08990 * 109.47375 * 300.00150 * 3 2 1 35 35 H 1.08994 * 109.47480 * 59.60253 * 4 3 2 36 36 H 1.09006 * 109.47523 * 299.59989 * 4 3 2 37 37 H 1.08996 * 109.46761 * 329.99980 * 7 6 5 38 38 H 1.09000 * 109.47179 * 210.00187 * 7 6 5 39 39 H 1.08995 * 109.47218 * 59.99560 * 8 7 6 40 40 H 1.09000 * 109.47012 * 299.99930 * 8 7 6 41 41 H 0.97003 * 119.99871 * 0.02562 * 12 11 9 42 42 H 1.08995 * 109.47579 * 52.88735 * 21 20 19 43 43 H 1.09002 * 109.46871 * 172.88606 * 21 20 19 44 44 H 1.09001 * 109.47409 * 292.87946 * 21 20 19 45 45 H 1.09001 * 113.62037 * 334.57124 * 24 22 20 46 46 H 1.09004 * 113.60962 * 105.47304 * 24 22 20 47 47 H 1.09006 * 113.60979 * 139.98614 * 25 24 22 48 48 H 1.09003 * 113.61344 * 270.80169 * 25 24 22 49 49 H 1.09001 * 109.46822 * 300.00274 * 29 28 26 50 50 H 1.09004 * 109.46756 * 59.99392 * 29 28 26 51 51 H 1.08998 * 109.47459 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1844 -0.0006 5 7 4.1314 2.5227 -0.0102 6 6 4.3644 3.3304 1.0683 7 6 4.0533 3.0102 2.5077 8 6 5.2585 2.3189 3.1484 9 6 4.9472 1.9982 4.5875 10 1 3.9861 2.2615 5.0038 11 6 5.8894 1.3686 5.3729 12 7 7.0597 1.0475 4.8659 13 14 5.5039 0.9717 7.1570 14 1 6.6731 0.2995 7.7785 15 1 4.3246 0.0713 7.2202 16 1 5.2071 2.2283 7.8908 17 7 4.8995 4.4306 0.6202 18 7 5.0280 4.3697 -0.6572 19 6 4.5691 3.2219 -1.0972 20 7 4.5355 2.7993 -2.4166 21 6 3.1821 2.9222 -2.9743 22 6 5.5096 3.5382 -3.2309 23 1 5.3517 4.6163 -3.2052 24 6 5.6787 2.9741 -4.6515 25 6 7.1848 3.2425 -4.4940 26 6 6.9677 3.1209 -2.9765 27 1 7.5347 3.8478 -2.3948 28 8 7.1037 1.7865 -2.4839 29 6 8.2385 1.5921 -1.6374 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.6887 1.8462 0.8900 34 1 1.6887 1.8463 -0.8899 35 1 3.8562 0.6376 -0.8872 36 1 3.8580 0.6495 0.8927 37 1 3.1881 2.3490 2.5540 38 1 3.8349 3.9325 3.0461 39 1 6.1237 2.9802 3.1020 40 1 5.4769 1.3967 2.6100 41 1 7.2601 1.2540 3.9396 42 1 2.8157 3.9368 -2.8187 43 1 3.2081 2.7051 -4.0422 44 1 2.5182 2.2157 -2.4761 45 1 5.4300 1.9160 -4.7338 46 1 5.2050 3.5824 -5.4221 47 1 7.8143 2.4556 -4.9095 48 1 7.4865 4.2396 -4.8148 49 1 9.1484 1.8252 -2.1903 50 1 8.1619 2.2488 -0.7707 51 1 8.2705 0.5545 -1.3050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001523449038.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:40 Heat of formation + Delta-G solvation = 19.672930 kcal Electronic energy + Delta-G solvation = -31403.414038 eV Core-core repulsion = 27340.909091 eV Total energy + Delta-G solvation = -4062.504947 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.70243 -39.94226 -38.21691 -36.83780 -35.22094 -34.97954 -33.99177 -31.65380 -29.88119 -28.76669 -27.02187 -26.60573 -26.40056 -25.13806 -24.72832 -24.07710 -23.51844 -21.98513 -20.86223 -20.08944 -19.36769 -17.50042 -16.92616 -16.87463 -16.40205 -16.28339 -16.26211 -15.80336 -15.46519 -15.08532 -14.88928 -14.57756 -14.09031 -13.75640 -13.74186 -13.65739 -13.58404 -13.20745 -13.09165 -12.53316 -12.40995 -12.19929 -12.07132 -11.82573 -11.78646 -11.57587 -11.52299 -11.21687 -11.12957 -10.94675 -10.88453 -10.49162 -10.35939 -10.29769 -10.12933 -10.04493 -9.91547 -9.85395 -9.52813 -9.24266 -8.65775 -8.35597 -8.06816 -6.38968 -4.09536 2.03569 2.31875 3.17705 3.37188 3.43445 3.45540 3.64067 3.68005 3.95872 4.33718 4.44580 4.52290 4.58915 4.60748 4.70829 4.78949 4.95774 4.97282 5.07832 5.09660 5.14980 5.17688 5.27349 5.28755 5.33676 5.38703 5.43040 5.44248 5.46590 5.50790 5.51776 5.58303 5.67105 5.70362 5.76599 5.80143 5.97738 6.09135 6.16128 6.22909 6.35345 6.54228 6.64143 6.82269 6.87631 7.25271 7.28351 7.39759 7.44311 8.11399 8.41329 8.82945 9.12135 9.63205 11.01399 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.003783 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.266414 B = 7400.410451 C = 9062.758227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.050 3.950 4 C 0.113 3.887 5 N -0.467 5.467 6 C 0.209 3.791 7 C -0.024 4.024 8 C 0.020 3.980 9 C -0.604 4.604 10 H 0.052 0.948 11 C 0.018 3.982 12 N -0.909 5.909 13 Si 1.069 2.931 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.287 1.287 17 N -0.294 5.294 18 N -0.325 5.325 19 C 0.346 3.654 20 N -0.436 5.436 21 C 0.024 3.976 22 C 0.072 3.928 23 H 0.093 0.907 24 C -0.121 4.121 25 C -0.160 4.160 26 C 0.080 3.920 27 H 0.074 0.926 28 O -0.349 6.349 29 C 0.031 3.969 30 H 0.040 0.960 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.016 0.984 40 H 0.006 0.994 41 H 0.269 0.731 42 H 0.037 0.963 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.089 0.911 49 H 0.039 0.961 50 H 0.042 0.958 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.436 0.623 -20.122 21.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C -0.028 4.028 4 C -0.011 4.011 5 N -0.163 5.163 6 C -0.059 4.059 7 C -0.064 4.064 8 C -0.018 4.018 9 C -0.642 4.642 10 H 0.070 0.930 11 C -0.186 4.186 12 N -0.544 5.544 13 Si 0.897 3.103 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.213 1.213 17 N -0.133 5.133 18 N -0.169 5.169 19 C -0.011 4.011 20 N -0.160 5.160 21 C -0.123 4.123 22 C -0.036 4.036 23 H 0.111 0.889 24 C -0.159 4.159 25 C -0.198 4.198 26 C 0.021 3.979 27 H 0.092 0.908 28 O -0.267 6.267 29 C -0.065 4.065 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.034 0.966 40 H 0.024 0.976 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.113 0.887 46 H 0.088 0.912 47 H 0.098 0.902 48 H 0.108 0.892 49 H 0.057 0.943 50 H 0.060 0.940 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.104 0.493 -18.836 20.137 hybrid contribution -1.427 0.540 -1.310 2.011 sum -8.531 1.033 -20.146 21.902 Atomic orbital electron populations 1.22778 0.80326 1.03075 1.00134 1.87836 1.20205 1.26558 1.95468 1.22815 0.93310 0.85589 1.01104 1.21537 0.91530 0.81040 1.06988 1.45996 1.48016 1.15828 1.06416 1.25571 0.99938 0.87857 0.92517 1.20287 1.01290 1.02176 0.82602 1.19174 0.92143 0.94480 0.96005 1.21942 1.03165 1.43337 0.95798 0.93006 1.25843 0.93222 0.93886 1.05691 1.70781 1.22134 1.44655 1.16869 0.83543 0.75684 0.76486 0.74581 1.20752 1.21413 1.21334 1.74006 1.17696 1.19339 1.02222 1.74481 1.22999 1.14715 1.04693 1.22297 1.01854 0.89038 0.87869 1.58721 1.07069 1.54171 0.96034 1.22568 0.87760 1.00863 1.01105 1.23558 0.90398 0.96730 0.92947 0.88916 1.22980 0.96156 1.02361 0.94362 1.23311 0.97090 1.02535 0.96854 1.23074 0.95272 0.85488 0.94102 0.90767 1.87921 1.46558 1.26376 1.65813 1.22812 0.87882 1.02473 0.93351 0.94122 0.89170 0.93692 0.92247 0.92975 0.87283 0.87231 0.91208 0.89222 0.96590 0.97618 0.92106 0.94453 0.89692 0.91062 0.88658 0.91239 0.90182 0.89234 0.94273 0.93959 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.83 10.70 -35.23 -0.38 -5.21 16 3 C 0.05 0.62 6.21 37.16 0.23 0.85 16 4 C 0.11 1.66 6.10 -4.04 -0.02 1.64 16 5 N -0.47 -8.04 2.81 -114.08 -0.32 -8.36 16 6 C 0.21 4.17 7.32 -154.01 -1.13 3.04 16 7 C -0.02 -0.49 5.48 -27.88 -0.15 -0.64 16 8 C 0.02 0.51 4.27 -27.89 -0.12 0.40 16 9 C -0.60 -16.85 9.11 -34.44 -0.31 -17.16 16 10 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 11 C 0.02 0.51 5.46 -17.82 -0.10 0.42 16 12 N -0.91 -27.80 13.65 55.43 0.76 -27.04 16 13 Si 1.07 25.02 29.90 -169.99 -5.08 19.93 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 17 N -0.29 -6.32 12.18 32.99 0.40 -5.92 16 18 N -0.32 -6.33 11.39 30.31 0.35 -5.99 16 19 C 0.35 5.83 6.60 -318.87 -2.11 3.72 16 20 N -0.44 -5.87 4.26 -173.83 -0.74 -6.61 16 21 C 0.02 0.25 9.54 60.06 0.57 0.83 16 22 C 0.07 0.87 2.66 -66.90 -0.18 0.69 16 23 H 0.09 1.16 7.95 -51.93 -0.41 0.75 16 24 C -0.12 -1.10 6.68 -25.92 -0.17 -1.27 16 25 C -0.16 -1.49 7.91 -25.92 -0.21 -1.69 16 26 C 0.08 1.02 3.99 -25.92 -0.10 0.92 16 27 H 0.07 1.03 7.87 -51.93 -0.41 0.62 16 28 O -0.35 -5.12 10.19 -35.23 -0.36 -5.47 16 29 C 0.03 0.43 10.85 101.05 1.10 1.52 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.04 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.06 0.78 7.75 -51.93 -0.40 0.37 16 34 H 0.05 0.59 6.03 -51.93 -0.31 0.27 16 35 H 0.11 1.53 8.09 -51.93 -0.42 1.11 16 36 H 0.11 1.78 8.08 -51.93 -0.42 1.36 16 37 H 0.07 1.33 7.58 -51.93 -0.39 0.93 16 38 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 39 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 40 H 0.01 0.15 8.01 -51.93 -0.42 -0.27 16 41 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 42 H 0.04 0.40 8.09 -51.93 -0.42 -0.02 16 43 H 0.08 0.68 7.16 -51.93 -0.37 0.31 16 44 H 0.07 0.72 5.83 -51.93 -0.30 0.42 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 414.56 15.07 6.25 6.25 Total: -1.00 -33.92 414.56 -9.56 -43.48 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -8.84 Total: 0.27 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.59 Total: -5.33 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.44 Total: -53.92 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.74 Total: -10.68 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.92 -9.56 -43.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523449038.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.153 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds