Wall clock time and date at job start Tue Mar 31 2020 20:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42896 * 114.00423 * 2 1 4 4 C 1.53001 * 109.47115 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47182 * 179.60346 * 4 3 2 6 6 C 1.36742 * 127.13647 * 84.01186 * 5 4 3 7 7 C 1.50704 * 126.34840 * 359.97438 * 6 5 4 8 8 C 1.52998 * 109.47003 * 90.00360 * 7 6 5 9 9 C 1.50696 * 109.47163 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99960 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00309 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99861 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00373 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47263 * 179.97438 * 13 11 9 15 15 H 1.48503 * 109.47267 * 59.99656 * 13 11 9 16 16 H 1.48504 * 109.47269 * 299.99774 * 13 11 9 17 17 N 1.30294 * 107.30379 * 180.26718 * 6 5 4 18 18 N 1.28525 * 110.05344 * 359.55343 * 17 6 5 19 19 C 1.31215 * 109.86029 * 0.45938 * 18 17 6 20 20 N 1.38587 * 126.47461 * 179.72779 * 19 18 17 21 21 C 1.46895 * 110.99685 * 257.43683 * 20 19 18 22 22 C 1.46901 * 110.99577 * 21.38826 * 20 19 18 23 23 H 1.08991 * 112.85233 * 302.30122 * 22 20 19 24 24 C 1.53783 * 113.60912 * 171.10535 * 22 20 19 25 25 C 1.53785 * 87.07993 * 220.02065 * 24 22 20 26 26 C 1.53774 * 87.08018 * 25.43636 * 25 24 22 27 27 H 1.09002 * 113.61021 * 220.01857 * 26 25 24 28 28 O 1.42894 * 113.61464 * 89.11717 * 26 25 24 29 29 C 1.42906 * 114.00362 * 112.50088 * 28 26 25 30 30 H 1.09003 * 109.47199 * 59.99216 * 1 2 3 31 31 H 1.08998 * 109.47663 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.46763 * 299.99964 * 1 2 3 33 33 H 1.08997 * 109.46922 * 60.00488 * 3 2 1 34 34 H 1.08990 * 109.47375 * 300.00150 * 3 2 1 35 35 H 1.08994 * 109.47480 * 59.60253 * 4 3 2 36 36 H 1.09006 * 109.47523 * 299.59989 * 4 3 2 37 37 H 1.08996 * 109.46761 * 329.99980 * 7 6 5 38 38 H 1.09000 * 109.47179 * 210.00187 * 7 6 5 39 39 H 1.08995 * 109.47218 * 59.99560 * 8 7 6 40 40 H 1.09000 * 109.47012 * 299.99930 * 8 7 6 41 41 H 0.97003 * 119.99871 * 0.02562 * 12 11 9 42 42 H 1.08995 * 109.47579 * 52.88735 * 21 20 19 43 43 H 1.09002 * 109.46871 * 172.88606 * 21 20 19 44 44 H 1.09001 * 109.47409 * 292.87946 * 21 20 19 45 45 H 1.09001 * 113.62037 * 334.57124 * 24 22 20 46 46 H 1.09004 * 113.60962 * 105.47304 * 24 22 20 47 47 H 1.09006 * 113.60979 * 139.98614 * 25 24 22 48 48 H 1.09003 * 113.61344 * 270.80169 * 25 24 22 49 49 H 1.09001 * 109.46822 * 300.00274 * 29 28 26 50 50 H 1.09004 * 109.46756 * 59.99392 * 29 28 26 51 51 H 1.08998 * 109.47459 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1844 -0.0006 5 7 4.1314 2.5227 -0.0102 6 6 4.3644 3.3304 1.0683 7 6 4.0533 3.0102 2.5077 8 6 5.2585 2.3189 3.1484 9 6 4.9472 1.9982 4.5875 10 1 3.9861 2.2615 5.0038 11 6 5.8894 1.3686 5.3729 12 7 7.0597 1.0475 4.8659 13 14 5.5039 0.9717 7.1570 14 1 6.6731 0.2995 7.7785 15 1 4.3246 0.0713 7.2202 16 1 5.2071 2.2283 7.8908 17 7 4.8995 4.4306 0.6202 18 7 5.0280 4.3697 -0.6572 19 6 4.5691 3.2219 -1.0972 20 7 4.5355 2.7993 -2.4166 21 6 3.1821 2.9222 -2.9743 22 6 5.5096 3.5382 -3.2309 23 1 5.3517 4.6163 -3.2052 24 6 5.6787 2.9741 -4.6515 25 6 7.1848 3.2425 -4.4940 26 6 6.9677 3.1209 -2.9765 27 1 7.5347 3.8478 -2.3948 28 8 7.1037 1.7865 -2.4839 29 6 8.2385 1.5921 -1.6374 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.6887 1.8462 0.8900 34 1 1.6887 1.8463 -0.8899 35 1 3.8562 0.6376 -0.8872 36 1 3.8580 0.6495 0.8927 37 1 3.1881 2.3490 2.5540 38 1 3.8349 3.9325 3.0461 39 1 6.1237 2.9802 3.1020 40 1 5.4769 1.3967 2.6100 41 1 7.2601 1.2540 3.9396 42 1 2.8157 3.9368 -2.8187 43 1 3.2081 2.7051 -4.0422 44 1 2.5182 2.2157 -2.4761 45 1 5.4300 1.9160 -4.7338 46 1 5.2050 3.5824 -5.4221 47 1 7.8143 2.4556 -4.9095 48 1 7.4865 4.2396 -4.8148 49 1 9.1484 1.8252 -2.1903 50 1 8.1619 2.2488 -0.7707 51 1 8.2705 0.5545 -1.3050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523449038.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:38 Heat of formation + Delta-G solvation = -0.761264 kcal Electronic energy + Delta-G solvation = -31404.300131 eV Core-core repulsion = 27340.909091 eV Total energy + Delta-G solvation = -4063.391040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -44.14500 -40.91593 -39.17594 -37.95545 -36.70076 -36.30658 -35.57731 -33.52394 -31.03103 -30.33184 -28.11459 -27.65738 -27.29145 -26.69703 -25.93145 -25.12433 -24.75783 -23.86836 -22.13951 -21.55759 -20.36989 -18.99556 -18.66320 -17.95369 -17.65483 -17.35053 -17.24188 -16.90427 -16.57517 -16.16532 -15.95632 -15.87758 -15.66159 -15.52669 -15.11288 -14.78185 -14.70128 -14.54924 -14.08575 -13.98783 -13.70443 -13.50901 -13.26382 -12.95137 -12.79307 -12.74827 -12.71030 -12.60335 -12.37663 -12.32210 -12.20618 -12.16199 -11.91114 -11.80009 -11.58622 -11.30239 -11.23635 -10.85354 -10.80728 -10.62519 -10.56077 -10.47565 -9.42893 -8.70594 -6.42429 0.63395 1.01585 1.54614 1.63435 1.68390 1.82087 2.31929 2.57393 2.67310 2.89623 3.15456 3.34823 3.42865 3.47177 3.56708 3.69308 3.75654 3.82666 3.85689 4.00701 4.05341 4.24066 4.28601 4.32022 4.34305 4.39506 4.41562 4.42696 4.46751 4.49612 4.54241 4.58960 4.64581 4.66716 4.70256 4.79095 4.81440 4.87132 4.95138 5.01488 5.12866 5.17818 5.28792 5.31193 5.39829 5.64836 5.90369 5.96376 6.09416 6.14867 6.23215 6.50363 7.40976 7.62802 8.69292 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.003783 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.266414 B = 7400.410451 C = 9062.758227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.061 3.939 4 C 0.113 3.887 5 N -0.465 5.465 6 C 0.193 3.807 7 C -0.007 4.007 8 C 0.030 3.970 9 C -0.615 4.615 10 H 0.063 0.937 11 C -0.037 4.037 12 N -0.936 5.936 13 Si 1.119 2.881 14 H -0.287 1.287 15 H -0.263 1.263 16 H -0.268 1.268 17 N -0.324 5.324 18 N -0.352 5.352 19 C 0.366 3.634 20 N -0.438 5.438 21 C 0.023 3.977 22 C 0.062 3.938 23 H 0.089 0.911 24 C -0.101 4.101 25 C -0.144 4.144 26 C 0.059 3.941 27 H 0.051 0.949 28 O -0.365 6.365 29 C 0.035 3.965 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.090 0.910 39 H -0.020 1.020 40 H -0.013 1.013 41 H 0.251 0.749 42 H 0.034 0.966 43 H 0.117 0.883 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.086 0.914 48 H 0.108 0.892 49 H 0.063 0.937 50 H 0.009 0.991 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.623 0.060 -21.950 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.016 4.016 4 C -0.009 4.009 5 N -0.160 5.160 6 C -0.076 4.076 7 C -0.047 4.047 8 C -0.008 4.008 9 C -0.653 4.653 10 H 0.082 0.918 11 C -0.234 4.234 12 N -0.573 5.573 13 Si 0.940 3.060 14 H -0.212 1.212 15 H -0.188 1.188 16 H -0.193 1.193 17 N -0.163 5.163 18 N -0.196 5.196 19 C 0.009 3.991 20 N -0.163 5.163 21 C -0.123 4.123 22 C -0.046 4.046 23 H 0.106 0.894 24 C -0.139 4.139 25 C -0.182 4.182 26 C 0.000 4.000 27 H 0.069 0.931 28 O -0.283 6.283 29 C -0.061 4.061 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.108 0.892 39 H -0.002 1.002 40 H 0.005 0.995 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.135 0.865 44 H 0.094 0.906 45 H 0.112 0.888 46 H 0.118 0.882 47 H 0.105 0.895 48 H 0.127 0.873 49 H 0.081 0.919 50 H 0.027 0.973 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.328 -0.062 -20.703 22.707 hybrid contribution -0.731 0.697 -0.862 1.328 sum -10.059 0.634 -21.565 23.804 Atomic orbital electron populations 1.23024 0.78336 1.04495 1.01161 1.87809 1.22345 1.26308 1.95630 1.22629 0.91354 0.85969 1.01689 1.21622 0.93365 0.79605 1.06346 1.46043 1.47891 1.16247 1.05813 1.25212 1.01146 0.88489 0.92718 1.19966 0.99606 1.01961 0.83134 1.18971 0.92892 0.93227 0.95747 1.22372 1.03568 1.42588 0.96748 0.91828 1.27497 0.92562 0.93335 1.10032 1.70927 1.23678 1.46637 1.16019 0.82924 0.76158 0.77494 0.69468 1.21214 1.18815 1.19289 1.73904 1.18284 1.20598 1.03504 1.74403 1.24832 1.16470 1.03907 1.22722 0.99172 0.88000 0.89202 1.58970 1.09130 1.53786 0.94423 1.22713 0.85762 1.00944 1.02871 1.23771 0.89423 0.96662 0.94743 0.89372 1.22920 0.95818 1.02552 0.92607 1.23283 0.97674 1.03888 0.93345 1.23356 0.96102 0.84200 0.96318 0.93096 1.87869 1.47017 1.27453 1.65918 1.22774 0.88890 1.01920 0.92537 0.92282 0.87649 0.93458 0.92842 0.91150 0.86419 0.89298 0.89223 0.89170 1.00208 0.99502 0.93976 0.94676 0.86493 0.90582 0.88788 0.88181 0.89523 0.87350 0.91875 0.97266 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.40 -9.51 10.70 -148.98 -1.59 -11.10 16 3 C 0.06 1.46 6.21 71.98 0.45 1.91 16 4 C 0.11 3.34 6.10 86.38 0.53 3.87 16 5 N -0.47 -16.27 2.81 -514.84 -1.45 -17.71 16 6 C 0.19 8.00 7.32 137.64 1.01 9.01 16 7 C -0.01 -0.30 5.48 29.85 0.16 -0.13 16 8 C 0.03 1.60 4.27 29.85 0.13 1.73 16 9 C -0.62 -34.86 9.11 25.60 0.23 -34.63 16 10 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 11 C -0.04 -2.14 5.46 84.65 0.46 -1.68 16 12 N -0.94 -59.16 13.65 21.45 0.29 -58.87 16 13 Si 1.12 49.93 29.90 68.60 2.05 51.98 16 14 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 15 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 17 N -0.32 -14.53 12.18 -49.53 -0.60 -15.13 16 18 N -0.35 -14.14 11.39 -58.00 -0.66 -14.80 16 19 C 0.37 12.40 6.60 260.11 1.72 14.12 16 20 N -0.44 -11.25 4.26 -703.87 -3.00 -14.25 16 21 C 0.02 0.42 9.54 127.69 1.22 1.64 16 22 C 0.06 1.40 2.66 45.44 0.12 1.53 16 23 H 0.09 2.11 7.95 -2.39 -0.02 2.09 16 24 C -0.10 -1.51 6.68 31.12 0.21 -1.30 16 25 C -0.14 -2.34 7.91 31.12 0.25 -2.09 16 26 C 0.06 1.50 3.99 31.12 0.12 1.63 16 27 H 0.05 1.49 7.87 -2.39 -0.02 1.47 16 28 O -0.36 -10.74 10.19 -148.98 -1.52 -12.26 16 29 C 0.04 1.00 10.85 113.37 1.23 2.23 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.05 1.34 7.75 -2.39 -0.02 1.32 16 34 H 0.07 1.42 6.03 -2.39 -0.01 1.41 16 35 H 0.12 3.23 8.09 -2.39 -0.02 3.22 16 36 H 0.09 2.99 8.08 -2.38 -0.02 2.97 16 37 H 0.09 3.43 7.58 -2.39 -0.02 3.41 16 38 H 0.09 3.82 8.14 -2.39 -0.02 3.80 16 39 H -0.02 -1.23 8.01 -2.39 -0.02 -1.25 16 40 H -0.01 -0.75 8.01 -2.39 -0.02 -0.77 16 41 H 0.25 16.35 7.22 -92.71 -0.67 15.68 16 42 H 0.03 0.67 8.09 -2.39 -0.02 0.65 16 43 H 0.12 1.40 7.16 -2.39 -0.02 1.38 16 44 H 0.08 1.31 5.83 -2.39 -0.01 1.30 16 45 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 48 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 51 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -76.86 414.56 3.60 -73.26 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 1.00 Total: 19.42 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 9.08 Total: -0.52 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -5.41 Total: -120.76 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -3.11 Total: -23.36 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 2.05 Total: 51.98 kcal Total: -76.86 3.60 -73.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523449038.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.494 kcal (2) G-P(sol) polarization free energy of solvation -76.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds