Wall clock time and date at job start Tue Mar 31 2020 21:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00601 * 2 1 4 4 H 1.48494 * 109.47519 * 240.00131 * 3 2 1 5 5 H 1.48498 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46777 * 119.99670 * 3 2 1 7 7 C 1.38817 * 119.99422 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99973 * 157.67565 * 7 2 1 9 9 N 1.36941 * 119.99908 * 337.67493 * 7 2 1 10 10 C 1.46498 * 120.00171 * 326.13891 * 9 7 2 11 11 C 1.53000 * 109.46878 * 264.43778 * 10 9 7 12 12 O 1.42899 * 109.47245 * 65.00115 * 11 10 9 13 13 C 1.46503 * 119.99643 * 146.13684 * 9 7 2 14 14 H 1.09005 * 109.49427 * 180.02562 * 13 9 7 15 15 C 1.53044 * 109.49704 * 60.00323 * 13 9 7 16 16 C 1.53038 * 109.53784 * 178.65157 * 15 13 9 17 17 C 1.53186 * 109.31426 * 61.36123 * 16 15 13 18 18 N 1.46927 * 108.77848 * 305.36338 * 17 16 15 19 19 C 1.34771 * 120.63407 * 233.58670 * 18 17 16 20 20 O 1.21284 * 119.99956 * 179.97438 * 19 18 17 21 21 C 1.50699 * 120.00080 * 0.02562 * 19 18 17 22 22 C 1.53002 * 109.47235 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.47103 * 64.99631 * 22 21 19 24 24 C 1.53002 * 109.47103 * 179.97438 * 23 22 21 25 25 C 1.52999 * 109.47032 * 300.00433 * 24 23 22 26 26 C 1.52998 * 109.47530 * 59.99828 * 25 24 23 27 27 C 1.52999 * 109.47032 * 185.00064 * 22 21 19 28 28 C 1.46931 * 118.73236 * 53.86162 * 18 17 16 29 29 H 0.97005 * 119.99485 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47116 * 24.43773 * 10 9 7 31 31 H 1.08996 * 109.47252 * 144.43960 * 10 9 7 32 32 H 1.09002 * 109.47311 * 184.99903 * 11 10 9 33 33 H 1.08999 * 109.47513 * 305.00047 * 11 10 9 34 34 H 0.96702 * 114.00281 * 179.97438 * 12 11 10 35 35 H 1.09000 * 109.45867 * 58.62591 * 15 13 9 36 36 H 1.09002 * 109.44452 * 298.65860 * 15 13 9 37 37 H 1.09003 * 109.49525 * 301.40930 * 16 15 13 38 38 H 1.09000 * 109.52596 * 181.33377 * 16 15 13 39 39 H 1.09000 * 109.58324 * 185.57918 * 17 16 15 40 40 H 1.08998 * 109.58583 * 65.15477 * 17 16 15 41 41 H 1.09003 * 109.46841 * 59.99734 * 21 19 18 42 42 H 1.08994 * 109.47216 * 299.99817 * 21 19 18 43 43 H 1.08997 * 109.46849 * 304.99688 * 22 21 19 44 44 H 1.09006 * 109.46691 * 60.00519 * 23 22 21 45 45 H 1.08992 * 109.47262 * 300.00172 * 23 22 21 46 46 H 1.08994 * 109.46872 * 180.02562 * 24 23 22 47 47 H 1.08997 * 109.46849 * 60.00057 * 24 23 22 48 48 H 1.08999 * 109.47342 * 180.02562 * 25 24 23 49 49 H 1.09006 * 109.47453 * 299.99904 * 25 24 23 50 50 H 1.09000 * 109.46778 * 60.00069 * 26 25 24 51 51 H 1.08995 * 109.47614 * 179.97438 * 26 25 24 52 52 H 1.09000 * 109.47179 * 59.99903 * 27 22 21 53 53 H 1.09000 * 109.47034 * 300.00053 * 27 22 21 54 54 H 1.08997 * 109.58665 * 65.92923 * 28 18 17 55 55 H 1.09001 * 109.58417 * 186.35493 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1040 1.6961 1.2126 7 6 2.0101 -1.2023 0.0005 8 1 3.0294 -1.2376 -0.3547 9 7 1.4023 -2.3435 0.4515 10 6 0.4316 -2.2727 1.5465 11 6 1.1345 -2.5748 2.8715 12 8 2.0912 -1.5499 3.1476 13 6 1.7227 -3.6351 -0.1610 14 1 1.1456 -4.4216 0.3254 15 6 3.2168 -3.9224 0.0046 16 6 3.5464 -5.2867 -0.6053 17 6 3.2213 -5.2645 -2.1021 18 7 1.8232 -4.8476 -2.2763 19 6 0.9666 -5.6002 -2.9947 20 8 -0.1852 -5.2453 -3.1307 21 6 1.4395 -6.8833 -3.6279 22 6 0.2793 -7.5389 -4.3796 23 6 -0.1436 -6.6436 -5.5460 24 6 -1.3033 -7.2996 -6.2980 25 6 -0.8576 -8.6610 -6.8355 26 6 -0.4348 -9.5563 -5.6691 27 6 0.7244 -8.9005 -4.9170 28 6 1.3784 -3.5913 -1.6575 29 1 -0.4850 0.8401 -0.0004 30 1 -0.0011 -1.2731 1.5844 31 1 -0.3587 -3.0046 1.3794 32 1 0.3977 -2.6097 3.6740 33 1 1.6424 -3.5368 2.8024 34 1 2.5757 -1.6765 3.9749 35 1 3.4702 -3.9276 1.0647 36 1 3.7934 -3.1490 -0.5028 37 1 2.9516 -6.0575 -0.1152 38 1 4.6059 -5.5016 -0.4662 39 1 3.3603 -6.2611 -2.5210 40 1 3.8791 -4.5580 -2.6084 41 1 1.7986 -7.5602 -2.8527 42 1 2.2489 -6.6675 -4.3253 43 1 -0.5631 -7.6738 -3.7012 44 1 0.6989 -6.5088 -6.2244 45 1 -0.4606 -5.6737 -5.1631 46 1 -1.6043 -6.6620 -7.1292 47 1 -2.1458 -7.4349 -5.6198 48 1 -1.6837 -9.1282 -7.3716 49 1 -0.0150 -8.5258 -7.5137 50 1 -1.2774 -9.6916 -4.9909 51 1 -0.1177 -10.5263 -6.0519 52 1 1.0256 -9.5383 -4.0860 53 1 1.5668 -8.7657 -5.5954 54 1 1.8890 -2.7513 -2.1283 55 1 0.3010 -3.4837 -1.7829 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566030860.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:37 Heat of formation + Delta-G solvation = -110.476976 kcal Electronic energy + Delta-G solvation = -31468.242846 eV Core-core repulsion = 27503.634519 eV Total energy + Delta-G solvation = -3964.608327 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.33461 -39.60003 -38.63597 -37.64198 -36.25426 -34.00863 -33.43682 -32.81973 -31.54132 -31.25994 -29.25368 -28.17158 -26.08670 -25.66230 -23.79245 -23.45173 -22.61506 -22.11767 -21.32626 -20.58448 -19.66877 -18.36775 -18.22425 -17.90488 -16.84425 -16.77440 -16.41546 -16.18585 -16.03517 -15.51304 -15.16431 -15.11273 -14.95397 -14.93419 -14.84469 -14.36122 -14.18019 -14.04101 -13.92315 -13.44192 -13.25646 -13.11584 -12.99939 -12.89831 -12.81099 -12.73159 -12.49721 -12.39635 -12.24452 -11.94517 -11.91305 -11.80560 -11.78304 -11.62744 -11.59659 -11.29135 -11.27709 -11.10340 -10.87302 -10.66779 -10.46632 -10.38885 -9.54150 -8.52654 -7.76558 -5.30229 1.44459 1.49694 1.55374 1.75279 2.11384 2.56879 3.34747 3.54734 3.62673 3.75640 3.79246 3.87296 3.99615 4.09605 4.15058 4.18939 4.28549 4.34222 4.36268 4.46648 4.50745 4.53055 4.56869 4.62678 4.67613 4.68752 4.70792 4.78661 4.82946 4.87218 4.90719 4.93325 4.94876 5.00717 5.04199 5.07910 5.13124 5.22238 5.24213 5.29296 5.34549 5.37553 5.45467 5.47605 5.57791 5.60236 5.63699 5.66664 5.73439 5.81348 6.50484 6.61547 7.18076 7.24528 7.33129 7.93360 8.42275 9.22409 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.002780 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.780827 B =10069.634189 C =10664.900783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.041 4.041 3 Si 0.951 3.049 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.283 1.283 7 C -0.226 4.226 8 H 0.056 0.944 9 N -0.582 5.582 10 C 0.135 3.865 11 C 0.073 3.927 12 O -0.573 6.573 13 C 0.167 3.833 14 H 0.047 0.953 15 C -0.115 4.115 16 C -0.122 4.122 17 C 0.103 3.897 18 N -0.610 5.610 19 C 0.498 3.502 20 O -0.591 6.591 21 C -0.124 4.124 22 C -0.069 4.069 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.107 4.107 28 C 0.124 3.876 29 H 0.245 0.755 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.375 0.625 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.070 0.930 41 H 0.121 0.879 42 H 0.116 0.884 43 H 0.050 0.950 44 H 0.065 0.935 45 H 0.041 0.959 46 H 0.056 0.944 47 H 0.045 0.955 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.051 0.949 51 H 0.078 0.922 52 H 0.077 0.923 53 H 0.077 0.923 54 H 0.045 0.955 55 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.697 -21.860 -6.501 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.236 4.236 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.227 1.227 6 H -0.210 1.210 7 C -0.357 4.357 8 H 0.073 0.927 9 N -0.302 5.302 10 C 0.008 3.992 11 C -0.006 4.006 12 O -0.378 6.378 13 C 0.060 3.940 14 H 0.065 0.935 15 C -0.155 4.155 16 C -0.160 4.160 17 C -0.018 4.018 18 N -0.343 5.343 19 C 0.289 3.711 20 O -0.472 6.472 21 C -0.163 4.163 22 C -0.088 4.088 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.153 4.153 26 C -0.157 4.157 27 C -0.144 4.144 28 C -0.001 4.001 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.222 0.778 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.140 0.860 40 H 0.089 0.911 41 H 0.139 0.861 42 H 0.134 0.866 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.087 0.913 50 H 0.070 0.930 51 H 0.097 0.903 52 H 0.095 0.905 53 H 0.095 0.905 54 H 0.063 0.937 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.764 -21.305 -7.150 23.469 hybrid contribution -0.221 1.688 0.822 1.890 sum 6.542 -19.617 -6.328 21.626 Atomic orbital electron populations 1.70120 1.06761 1.25442 1.54824 1.25602 0.95459 1.01133 1.01441 0.85598 0.77928 0.80442 0.77985 1.20296 1.22651 1.20961 1.18903 0.93833 0.86464 1.36467 0.92664 1.43905 1.48539 1.02410 1.35340 1.21003 0.90483 1.01946 0.85740 1.22782 0.90789 0.89556 0.97506 1.86773 1.56106 1.49748 1.45141 1.20861 0.95456 0.87427 0.90281 0.93489 1.21805 0.95989 0.97271 1.00392 1.21896 1.03149 0.96238 0.94761 1.22056 0.79968 1.02443 0.97366 1.48450 1.12281 1.22505 1.51103 1.21649 0.84954 0.86637 0.77898 1.90656 1.20698 1.73859 1.62014 1.21836 1.00504 0.92567 1.01434 1.20881 0.96422 0.95475 0.95985 1.21650 0.98515 0.98669 0.96902 1.21500 0.97650 0.97352 0.99138 1.21528 1.01268 0.94532 0.97929 1.21528 0.98256 0.98830 0.97097 1.21555 0.98430 0.94025 1.00393 1.21812 0.98327 0.84820 0.95125 0.94557 0.91144 0.94895 0.93732 0.94309 0.77843 0.92725 0.93417 0.91281 0.87891 0.85969 0.91139 0.86108 0.86570 0.93192 0.91671 0.93987 0.92550 0.93625 0.91662 0.91270 0.92977 0.90312 0.90474 0.90462 0.93694 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.67 11.34 21.65 0.25 -56.42 16 2 C -0.04 -2.35 4.92 84.86 0.42 -1.93 16 3 Si 0.95 47.23 29.61 68.60 2.03 49.27 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 6 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.23 -12.39 7.95 84.03 0.67 -11.73 16 8 H 0.06 3.02 6.86 -2.91 -0.02 3.00 16 9 N -0.58 -28.81 2.35 -676.79 -1.59 -30.40 16 10 C 0.13 6.56 5.57 86.38 0.48 7.04 16 11 C 0.07 2.85 7.39 71.98 0.53 3.38 16 12 O -0.57 -23.51 13.40 -148.98 -2.00 -25.51 16 13 C 0.17 6.88 2.80 45.21 0.13 7.00 16 14 H 0.05 1.92 7.87 -2.38 -0.02 1.90 16 15 C -0.12 -3.78 5.11 30.62 0.16 -3.63 16 16 C -0.12 -2.64 6.08 30.67 0.19 -2.45 16 17 C 0.10 2.18 6.34 86.36 0.55 2.73 16 18 N -0.61 -19.43 2.97 -818.08 -2.43 -21.85 16 19 C 0.50 15.90 7.41 87.66 0.65 16.55 16 20 O -0.59 -25.17 13.38 -3.04 -0.04 -25.21 16 21 C -0.12 -2.39 3.52 29.85 0.11 -2.29 16 22 C -0.07 -1.43 1.84 -10.79 -0.02 -1.45 16 23 C -0.12 -2.92 4.94 30.59 0.15 -2.77 16 24 C -0.12 -2.56 5.92 30.59 0.18 -2.37 16 25 C -0.12 -1.79 5.92 30.59 0.18 -1.61 16 26 C -0.12 -1.67 5.92 30.58 0.18 -1.49 16 27 C -0.11 -1.45 5.20 30.58 0.16 -1.30 16 28 C 0.12 5.35 5.78 86.51 0.50 5.85 16 29 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 30 H 0.07 4.04 5.34 -2.39 -0.01 4.03 16 31 H 0.03 1.56 8.04 -2.39 -0.02 1.54 16 32 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.38 10.74 9.12 -74.06 -0.68 10.06 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.73 7.03 -2.39 -0.02 1.72 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.12 1.53 5.93 -2.39 -0.01 1.52 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.12 1.62 7.69 -2.39 -0.02 1.61 16 42 H 0.12 1.67 7.94 -2.39 -0.02 1.65 16 43 H 0.05 1.32 7.95 -2.39 -0.02 1.30 16 44 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.04 1.39 5.95 -2.39 -0.01 1.37 16 46 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 50 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 53 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 54 H 0.04 2.15 7.52 -2.39 -0.02 2.13 16 55 H 0.04 2.00 7.00 -2.39 -0.02 1.99 16 Total: -1.00 -76.69 411.69 1.60 -75.09 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.18 Total: 25.52 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 5.20 Total: 9.53 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -3.77 Total: -108.68 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -2.04 Total: -50.72 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.27 kcal Total: -76.69 1.60 -75.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566030860.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.390 kcal (2) G-P(sol) polarization free energy of solvation -76.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds