Wall clock time and date at job start Tue Mar 31 2020 20:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00032 * 2 1 4 4 C 1.50697 * 109.47340 * 66.04631 * 3 2 1 5 5 O 1.21286 * 119.99974 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00280 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00223 * 179.72594 * 6 4 3 8 8 H 1.09008 * 112.84781 * 336.47110 * 7 6 4 9 9 C 1.53781 * 113.61461 * 107.77694 * 7 6 4 10 10 C 1.53783 * 87.08215 * 89.11945 * 9 7 6 11 11 H 1.09004 * 113.60898 * 270.88424 * 10 9 7 12 12 N 1.46893 * 113.69452 * 139.99043 * 10 9 7 13 13 C 1.46897 * 111.00201 * 107.46172 * 12 10 9 14 14 C 1.50693 * 109.47586 * 180.02562 * 13 12 10 15 15 O 1.21297 * 119.99831 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00549 * 180.02562 * 14 13 12 17 17 C 1.37096 * 120.00616 * 179.97438 * 16 14 13 18 18 H 1.08000 * 119.99803 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00418 * 180.02562 * 17 16 14 20 20 N 1.31419 * 120.00116 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00210 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47117 * 59.99820 * 21 19 17 23 23 H 1.48498 * 109.47183 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47135 * 299.99530 * 21 19 17 25 25 C 1.53777 * 113.61662 * 205.27762 * 7 6 4 26 26 C 1.46900 * 110.99614 * 236.04207 * 2 1 3 27 27 C 1.53780 * 113.61750 * 287.65627 * 26 2 1 28 28 C 1.53962 * 87.01726 * 220.04994 * 27 26 2 29 29 C 1.53780 * 87.11250 * 25.36559 * 28 27 26 30 30 H 1.09000 * 109.47440 * 53.67331 * 1 2 3 31 31 H 1.09000 * 109.47826 * 173.67690 * 1 2 3 32 32 H 1.09003 * 109.47192 * 293.67931 * 1 2 3 33 33 H 1.08992 * 109.47271 * 306.04466 * 3 2 1 34 34 H 1.09006 * 109.46760 * 186.04781 * 3 2 1 35 35 H 0.97002 * 119.99707 * 359.97438 * 6 4 3 36 36 H 1.09003 * 113.61060 * 203.66343 * 9 7 6 37 37 H 1.08996 * 113.61546 * 334.56820 * 9 7 6 38 38 H 1.00900 * 111.00412 * 231.42215 * 12 10 9 39 39 H 1.09002 * 109.46981 * 300.00362 * 13 12 10 40 40 H 1.08996 * 109.47188 * 59.99941 * 13 12 10 41 41 H 0.97007 * 119.99922 * 359.97438 * 16 14 13 42 42 H 0.96998 * 120.00138 * 180.02562 * 20 19 17 43 43 H 1.08997 * 113.61641 * 25.42456 * 25 7 6 44 44 H 1.08994 * 113.61635 * 156.25149 * 25 7 6 45 45 H 1.08999 * 112.85128 * 58.86102 * 26 2 1 46 46 H 1.09000 * 113.61220 * 334.56663 * 27 26 2 47 47 H 1.08994 * 113.61566 * 105.47688 * 27 26 2 48 48 H 1.09002 * 113.53589 * 270.80720 * 28 27 26 49 49 H 1.09003 * 113.73828 * 139.94646 * 28 27 26 50 50 H 1.08998 * 113.61160 * 220.08952 * 29 28 27 51 51 H 1.08997 * 113.61668 * 89.18578 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0055 1.4453 2.1411 6 7 2.0189 3.3198 1.5237 7 6 1.6652 3.9787 2.7834 8 1 0.7920 3.5355 3.2623 9 6 2.8589 4.1730 3.7333 10 6 3.0958 5.5215 3.0329 11 1 3.7501 5.4530 2.1638 12 7 3.4768 6.6040 3.9498 13 6 4.8972 6.9468 3.7984 14 6 5.2505 8.0578 4.7532 15 8 4.4022 8.5191 5.4874 16 7 6.5085 8.5397 4.7907 17 6 6.8298 9.5508 5.6590 18 1 6.0746 9.9615 6.3127 19 6 8.1268 10.0479 5.6973 20 7 9.0457 9.5485 4.9015 21 14 8.5643 11.4261 6.8799 22 1 8.3090 10.9820 8.2737 23 1 10.0000 11.7728 6.7265 24 1 7.7318 12.6187 6.5799 25 6 1.5991 5.5115 2.6796 26 6 1.9953 -0.7661 -1.1376 27 6 1.8171 -2.2865 -0.9917 28 6 3.2264 -2.4286 -1.5950 29 6 3.5114 -1.0135 -1.0648 30 1 -0.3634 0.6088 -0.8279 31 1 -0.3635 -1.0214 -0.1132 32 1 -0.3634 0.4127 0.9412 33 1 1.5611 1.9273 -0.8309 34 1 3.0797 1.3443 -0.1083 35 1 2.5249 3.8008 0.8502 36 1 2.5723 4.2694 4.7805 37 1 3.6624 3.4531 3.5778 38 1 2.8925 7.4153 3.8141 39 1 5.5078 6.0711 4.0186 40 1 5.0852 7.2729 2.7755 41 1 7.1868 8.1710 4.2033 42 1 9.9511 9.8952 4.9285 43 1 1.3858 5.8722 1.6734 44 1 0.9671 5.9737 3.4378 45 1 1.6621 -0.3777 -2.0999 46 1 1.7496 -2.6209 0.0436 47 1 1.0280 -2.6961 -1.6222 48 1 3.2294 -2.4962 -2.6830 49 1 3.8306 -3.2023 -1.1213 50 1 4.0880 -0.3969 -1.7543 51 1 3.9080 -0.9992 -0.0497 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566793018.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:38 Heat of formation + Delta-G solvation = -16.938038 kcal Electronic energy + Delta-G solvation = -28485.051665 eV Core-core repulsion = 24420.959147 eV Total energy + Delta-G solvation = -4064.092517 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.58890 -39.64665 -38.59876 -37.94788 -35.27744 -34.53898 -33.81914 -32.50026 -31.19433 -28.85896 -26.97129 -26.47117 -25.79023 -25.70530 -24.41135 -23.23678 -22.49476 -20.88918 -19.76371 -19.53771 -19.10610 -17.88430 -17.55932 -16.62898 -16.44918 -16.04390 -15.72450 -15.57868 -15.30401 -15.15569 -14.62541 -14.56701 -14.40943 -14.09623 -13.86521 -13.69655 -13.35649 -13.01100 -12.83100 -12.69814 -12.42552 -12.26963 -12.14593 -12.09602 -11.91019 -11.86690 -11.57727 -11.36425 -11.27806 -11.02382 -10.95500 -10.66372 -10.60210 -10.52280 -10.44130 -10.21079 -9.94041 -9.50246 -9.22263 -8.71430 -8.44527 -8.07773 -7.96125 -6.41920 -3.82826 2.41261 2.73176 3.20151 3.25774 3.30299 3.62488 3.90717 4.10553 4.11424 4.26079 4.37138 4.38474 4.41777 4.44646 4.48005 4.52490 4.79018 4.85170 4.89602 4.97687 5.05738 5.13640 5.19969 5.26151 5.26543 5.31422 5.41672 5.41915 5.50487 5.53251 5.61864 5.70842 5.75338 5.77966 5.81460 5.89894 5.91388 5.98487 6.04630 6.10730 6.26149 6.44436 6.52861 6.72251 7.25849 7.28816 7.54822 7.65819 8.04039 8.05995 8.61054 9.17586 9.54041 10.05589 10.75742 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020958 B = 0.001586 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.667378 B =17655.363642 C =18710.180156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.512 5.512 3 C 0.035 3.965 4 C 0.516 3.484 5 O -0.520 6.520 6 N -0.715 5.715 7 C 0.120 3.880 8 H 0.104 0.896 9 C -0.135 4.135 10 C 0.060 3.940 11 H 0.068 0.932 12 N -0.655 5.655 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.584 6.584 16 N -0.564 5.564 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C -0.148 4.148 26 C 0.050 3.950 27 C -0.125 4.125 28 C -0.142 4.142 29 C -0.132 4.132 30 H 0.019 0.981 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.399 0.601 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.350 0.650 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.078 0.922 49 H 0.072 0.928 50 H 0.066 0.934 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.944 -20.534 -17.834 30.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.236 5.236 3 C -0.096 4.096 4 C 0.302 3.698 5 O -0.395 6.395 6 N -0.367 5.367 7 C 0.014 3.986 8 H 0.122 0.878 9 C -0.175 4.175 10 C -0.051 4.051 11 H 0.086 0.914 12 N -0.288 5.288 13 C -0.082 4.082 14 C 0.226 3.774 15 O -0.468 6.468 16 N -0.200 5.200 17 C -0.430 4.430 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.187 4.187 26 C -0.058 4.058 27 C -0.163 4.163 28 C -0.180 4.180 29 C -0.170 4.170 30 H 0.038 0.962 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.233 0.767 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.171 0.829 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.122 0.878 45 H 0.082 0.918 46 H 0.110 0.890 47 H 0.083 0.917 48 H 0.097 0.903 49 H 0.091 0.909 50 H 0.084 0.916 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.511 -21.249 -15.775 29.714 hybrid contribution 0.872 1.684 -1.815 2.625 sum -12.639 -19.565 -17.590 29.188 Atomic orbital electron populations 1.22536 0.86508 1.01785 1.02090 1.61937 1.08720 1.11225 1.41734 1.21959 1.02402 0.90338 0.94908 1.20497 0.79195 0.81279 0.88851 1.90681 1.38850 1.63591 1.46362 1.45710 1.57794 1.13699 1.19502 1.21739 0.99236 0.92581 0.85002 0.87773 1.23539 0.97545 0.96216 1.00157 1.23101 0.94683 0.93360 0.93968 0.91385 1.60202 1.03304 1.12245 1.53023 1.21727 0.90457 0.98653 0.97410 1.19828 0.83762 0.86370 0.87485 1.90523 1.48679 1.62431 1.45141 1.41861 1.08709 1.33277 1.36178 1.19663 0.95569 1.11511 1.16255 0.87965 1.25261 0.95405 0.99155 0.98099 1.69606 1.03395 1.42958 1.38414 0.85909 0.77187 0.80716 0.80354 1.19869 1.20985 1.19926 1.23609 0.97355 0.95186 1.02514 1.23273 0.96274 0.94426 0.91864 1.22975 0.97014 0.94219 1.02107 1.22744 0.97314 0.97482 1.00444 1.23010 0.94825 0.96909 1.02260 0.96244 0.91452 0.89228 0.92040 0.87756 0.76709 0.88154 0.91524 0.82912 0.89680 0.93972 0.77481 0.91830 0.91170 0.87810 0.91803 0.88989 0.91724 0.90295 0.90941 0.91575 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.15 60.06 0.55 0.71 16 2 N -0.51 -4.34 4.44 -235.35 -1.05 -5.38 16 3 C 0.04 0.26 5.37 -4.98 -0.03 0.23 16 4 C 0.52 5.14 7.59 -10.99 -0.08 5.06 16 5 O -0.52 -7.22 13.91 5.55 0.08 -7.14 16 6 N -0.71 -5.94 5.26 -53.02 -0.28 -6.22 16 7 C 0.12 1.19 4.33 -67.12 -0.29 0.90 16 8 H 0.10 1.18 7.46 -51.92 -0.39 0.79 16 9 C -0.13 -1.56 7.68 -25.92 -0.20 -1.76 16 10 C 0.06 0.68 4.01 -66.90 -0.27 0.41 16 11 H 0.07 0.70 7.87 -51.93 -0.41 0.30 16 12 N -0.66 -10.22 6.19 -107.14 -0.66 -10.88 16 13 C 0.05 0.87 6.01 -4.98 -0.03 0.84 16 14 C 0.44 10.38 7.82 -10.99 -0.09 10.29 16 15 O -0.58 -15.86 15.78 5.54 0.09 -15.77 16 16 N -0.56 -14.29 5.29 -10.97 -0.06 -14.35 16 17 C -0.30 -8.41 9.68 -14.94 -0.14 -8.55 16 18 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 21 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 C -0.15 -1.38 7.40 -25.92 -0.19 -1.57 16 26 C 0.05 0.33 3.17 -66.90 -0.21 0.12 16 27 C -0.13 -0.77 7.15 -25.82 -0.18 -0.95 16 28 C -0.14 -0.75 8.09 -25.82 -0.21 -0.96 16 29 C -0.13 -0.79 6.82 -25.92 -0.18 -0.97 16 30 H 0.02 0.14 8.06 -51.93 -0.42 -0.28 16 31 H 0.07 0.51 7.49 -51.93 -0.39 0.12 16 32 H 0.09 0.96 6.02 -51.93 -0.31 0.64 16 33 H 0.06 0.35 8.06 -51.93 -0.42 -0.07 16 34 H 0.10 0.63 7.24 -51.93 -0.38 0.25 16 35 H 0.40 2.33 8.70 -40.82 -0.36 1.98 16 36 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.35 5.60 8.25 -39.29 -0.32 5.28 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.04 0.65 8.13 -51.93 -0.42 0.23 16 41 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 51 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 412.89 15.07 6.22 6.22 Total: -1.00 -33.25 412.89 -10.32 -43.58 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -8.72 Total: 13.41 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.65 Total: 4.30 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -1.32 Total: -60.63 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.16 Total: -22.92 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.25 -10.32 -43.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566793018.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.638 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds