Wall clock time and date at job start Tue Mar 31 2020 20:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00032 * 2 1 4 4 C 1.50697 * 109.47340 * 66.04631 * 3 2 1 5 5 O 1.21286 * 119.99974 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00280 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00223 * 179.72594 * 6 4 3 8 8 H 1.09008 * 112.84781 * 336.47110 * 7 6 4 9 9 C 1.53781 * 113.61461 * 107.77694 * 7 6 4 10 10 C 1.53783 * 87.08215 * 89.11945 * 9 7 6 11 11 H 1.09004 * 113.60898 * 270.88424 * 10 9 7 12 12 N 1.46893 * 113.69452 * 139.99043 * 10 9 7 13 13 C 1.46897 * 111.00201 * 107.46172 * 12 10 9 14 14 C 1.50693 * 109.47586 * 180.02562 * 13 12 10 15 15 O 1.21297 * 119.99831 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00549 * 180.02562 * 14 13 12 17 17 C 1.37096 * 120.00616 * 179.97438 * 16 14 13 18 18 H 1.08000 * 119.99803 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00418 * 180.02562 * 17 16 14 20 20 N 1.31419 * 120.00116 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00210 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47117 * 59.99820 * 21 19 17 23 23 H 1.48498 * 109.47183 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47135 * 299.99530 * 21 19 17 25 25 C 1.53777 * 113.61662 * 205.27762 * 7 6 4 26 26 C 1.46900 * 110.99614 * 236.04207 * 2 1 3 27 27 C 1.53780 * 113.61750 * 287.65627 * 26 2 1 28 28 C 1.53962 * 87.01726 * 220.04994 * 27 26 2 29 29 C 1.53780 * 87.11250 * 25.36559 * 28 27 26 30 30 H 1.09000 * 109.47440 * 53.67331 * 1 2 3 31 31 H 1.09000 * 109.47826 * 173.67690 * 1 2 3 32 32 H 1.09003 * 109.47192 * 293.67931 * 1 2 3 33 33 H 1.08992 * 109.47271 * 306.04466 * 3 2 1 34 34 H 1.09006 * 109.46760 * 186.04781 * 3 2 1 35 35 H 0.97002 * 119.99707 * 359.97438 * 6 4 3 36 36 H 1.09003 * 113.61060 * 203.66343 * 9 7 6 37 37 H 1.08996 * 113.61546 * 334.56820 * 9 7 6 38 38 H 1.00900 * 111.00412 * 231.42215 * 12 10 9 39 39 H 1.09002 * 109.46981 * 300.00362 * 13 12 10 40 40 H 1.08996 * 109.47188 * 59.99941 * 13 12 10 41 41 H 0.97007 * 119.99922 * 359.97438 * 16 14 13 42 42 H 0.96998 * 120.00138 * 180.02562 * 20 19 17 43 43 H 1.08997 * 113.61641 * 25.42456 * 25 7 6 44 44 H 1.08994 * 113.61635 * 156.25149 * 25 7 6 45 45 H 1.08999 * 112.85128 * 58.86102 * 26 2 1 46 46 H 1.09000 * 113.61220 * 334.56663 * 27 26 2 47 47 H 1.08994 * 113.61566 * 105.47688 * 27 26 2 48 48 H 1.09002 * 113.53589 * 270.80720 * 28 27 26 49 49 H 1.09003 * 113.73828 * 139.94646 * 28 27 26 50 50 H 1.08998 * 113.61160 * 220.08952 * 29 28 27 51 51 H 1.08997 * 113.61668 * 89.18578 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0055 1.4453 2.1411 6 7 2.0189 3.3198 1.5237 7 6 1.6652 3.9787 2.7834 8 1 0.7920 3.5355 3.2623 9 6 2.8589 4.1730 3.7333 10 6 3.0958 5.5215 3.0329 11 1 3.7501 5.4530 2.1638 12 7 3.4768 6.6040 3.9498 13 6 4.8972 6.9468 3.7984 14 6 5.2505 8.0578 4.7532 15 8 4.4022 8.5191 5.4874 16 7 6.5085 8.5397 4.7907 17 6 6.8298 9.5508 5.6590 18 1 6.0746 9.9615 6.3127 19 6 8.1268 10.0479 5.6973 20 7 9.0457 9.5485 4.9015 21 14 8.5643 11.4261 6.8799 22 1 8.3090 10.9820 8.2737 23 1 10.0000 11.7728 6.7265 24 1 7.7318 12.6187 6.5799 25 6 1.5991 5.5115 2.6796 26 6 1.9953 -0.7661 -1.1376 27 6 1.8171 -2.2865 -0.9917 28 6 3.2264 -2.4286 -1.5950 29 6 3.5114 -1.0135 -1.0648 30 1 -0.3634 0.6088 -0.8279 31 1 -0.3635 -1.0214 -0.1132 32 1 -0.3634 0.4127 0.9412 33 1 1.5611 1.9273 -0.8309 34 1 3.0797 1.3443 -0.1083 35 1 2.5249 3.8008 0.8502 36 1 2.5723 4.2694 4.7805 37 1 3.6624 3.4531 3.5778 38 1 2.8925 7.4153 3.8141 39 1 5.5078 6.0711 4.0186 40 1 5.0852 7.2729 2.7755 41 1 7.1868 8.1710 4.2033 42 1 9.9511 9.8952 4.9285 43 1 1.3858 5.8722 1.6734 44 1 0.9671 5.9737 3.4378 45 1 1.6621 -0.3777 -2.0999 46 1 1.7496 -2.6209 0.0436 47 1 1.0280 -2.6961 -1.6222 48 1 3.2294 -2.4962 -2.6830 49 1 3.8306 -3.2023 -1.1213 50 1 4.0880 -0.3969 -1.7543 51 1 3.9080 -0.9992 -0.0497 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566793018.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:37 Heat of formation + Delta-G solvation = -42.890970 kcal Electronic energy + Delta-G solvation = -28486.177068 eV Core-core repulsion = 24420.959147 eV Total energy + Delta-G solvation = -4065.217921 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.37224 -40.38975 -39.96910 -39.14336 -36.15959 -35.83648 -35.34097 -33.58106 -33.18212 -29.54096 -28.38890 -27.14470 -26.68281 -26.23491 -26.00989 -24.14053 -23.27338 -21.63761 -21.10406 -20.31465 -20.19119 -19.88098 -18.29802 -17.81442 -17.22093 -17.05623 -16.81788 -16.40976 -16.28397 -16.28270 -16.05198 -15.68781 -15.61088 -15.19383 -14.98615 -14.82671 -14.40335 -14.13097 -13.61455 -13.51120 -13.46384 -13.30010 -13.25474 -13.15262 -12.88186 -12.79846 -12.64210 -12.55979 -12.51419 -12.42446 -12.12021 -11.79201 -11.52346 -11.47983 -11.45708 -11.40994 -11.10365 -10.72373 -10.32875 -10.02031 -10.01284 -9.29592 -9.27653 -8.46501 -5.95373 1.40129 1.42166 1.52993 1.65979 2.04532 2.05779 2.29641 2.97142 3.05127 3.20882 3.49328 3.58330 3.62687 3.66595 3.79237 3.84174 3.97619 3.99655 4.05911 4.14516 4.30343 4.31428 4.33860 4.48106 4.54762 4.56226 4.59622 4.60279 4.71121 4.85782 4.88475 4.88696 4.95607 5.01424 5.05867 5.09244 5.10785 5.13822 5.17389 5.33538 5.40865 5.51487 5.61586 5.93269 5.94282 6.17881 6.19194 6.45196 6.60447 6.62321 7.12707 7.33072 7.56548 8.12000 8.70577 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020958 B = 0.001586 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.667378 B =17655.363642 C =18710.180156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.533 5.533 3 C 0.040 3.960 4 C 0.513 3.487 5 O -0.566 6.566 6 N -0.702 5.702 7 C 0.129 3.871 8 H 0.087 0.913 9 C -0.139 4.139 10 C 0.061 3.939 11 H 0.091 0.909 12 N -0.672 5.672 13 C 0.066 3.934 14 C 0.436 3.564 15 O -0.624 6.624 16 N -0.573 5.573 17 C -0.337 4.337 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.993 3.007 22 H -0.273 1.273 23 H -0.270 1.270 24 H -0.271 1.271 25 C -0.132 4.132 26 C 0.051 3.949 27 C -0.128 4.128 28 C -0.136 4.136 29 C -0.131 4.131 30 H 0.031 0.969 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.415 0.585 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.347 0.653 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.092 0.908 49 H 0.071 0.929 50 H 0.079 0.921 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.318 -20.592 -20.195 31.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.258 5.258 3 C -0.091 4.091 4 C 0.300 3.700 5 O -0.444 6.444 6 N -0.354 5.354 7 C 0.022 3.978 8 H 0.106 0.894 9 C -0.179 4.179 10 C -0.048 4.048 11 H 0.109 0.891 12 N -0.305 5.305 13 C -0.066 4.066 14 C 0.224 3.776 15 O -0.511 6.511 16 N -0.210 5.210 17 C -0.466 4.466 18 H 0.096 0.904 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.817 3.183 22 H -0.199 1.199 23 H -0.194 1.194 24 H -0.196 1.196 25 C -0.171 4.171 26 C -0.057 4.057 27 C -0.166 4.166 28 C -0.174 4.174 29 C -0.169 4.169 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.139 0.861 35 H 0.252 0.748 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.167 0.833 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.111 0.889 49 H 0.090 0.910 50 H 0.098 0.902 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.859 -21.315 -18.185 30.828 hybrid contribution 0.639 1.640 -1.069 2.059 sum -12.220 -19.674 -19.254 30.119 Atomic orbital electron populations 1.22401 0.86896 1.01991 1.01042 1.61889 1.08622 1.12187 1.43105 1.21988 1.03410 0.89876 0.93800 1.21062 0.78261 0.81364 0.89324 1.90673 1.40952 1.64707 1.48029 1.45579 1.57382 1.13354 1.19128 1.21512 0.97827 0.93112 0.85332 0.89446 1.23513 0.98198 0.96565 0.99608 1.23222 0.96386 0.91404 0.93832 0.89113 1.60164 1.02198 1.12941 1.55215 1.21578 0.91813 0.96457 0.96793 1.20948 0.82571 0.86737 0.87381 1.90491 1.49659 1.63982 1.46966 1.41932 1.09620 1.33259 1.36204 1.19643 0.95912 1.13422 1.17637 0.90359 1.26031 0.94785 1.00997 0.99377 1.69664 1.03718 1.43664 1.39006 0.84990 0.77492 0.77801 0.78059 1.19881 1.19441 1.19609 1.23498 0.95606 0.94316 1.03679 1.23340 0.96549 0.94172 0.91647 1.22961 0.98020 0.94289 1.01366 1.22749 0.96437 0.97072 1.01166 1.22978 0.94503 0.97605 1.01782 0.95090 0.91127 0.91889 0.89680 0.86125 0.74815 0.90091 0.91851 0.83280 0.88387 0.91118 0.76956 0.91279 0.88756 0.88377 0.90616 0.90710 0.90942 0.88933 0.91031 0.90228 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.15 127.69 1.17 1.57 16 2 N -0.53 -8.44 4.44 -898.52 -3.99 -12.43 16 3 C 0.04 0.50 5.37 85.56 0.46 0.96 16 4 C 0.51 9.65 7.59 87.66 0.67 10.32 16 5 O -0.57 -15.95 13.91 -3.05 -0.04 -15.99 16 6 N -0.70 -10.26 5.26 -440.04 -2.32 -12.58 16 7 C 0.13 2.41 4.33 45.52 0.20 2.61 16 8 H 0.09 2.00 7.46 -2.38 -0.02 1.98 16 9 C -0.14 -3.12 7.68 31.12 0.24 -2.88 16 10 C 0.06 1.27 4.01 45.45 0.18 1.45 16 11 H 0.09 1.53 7.87 -2.39 -0.02 1.51 16 12 N -0.67 -20.16 6.19 -492.87 -3.05 -23.21 16 13 C 0.07 2.19 6.01 85.56 0.51 2.70 16 14 C 0.44 20.63 7.82 87.66 0.69 21.32 16 15 O -0.62 -34.64 15.78 -3.08 -0.05 -34.69 16 16 N -0.57 -29.32 5.29 -307.00 -1.62 -30.94 16 17 C -0.34 -19.16 9.68 84.04 0.81 -18.35 16 18 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 19 C -0.01 -0.64 5.50 84.92 0.47 -0.18 16 20 N -0.92 -49.40 13.05 21.66 0.28 -49.11 16 21 Si 0.99 42.87 29.55 68.60 2.03 44.89 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 C -0.13 -2.20 7.40 31.12 0.23 -1.97 16 26 C 0.05 0.58 3.17 45.44 0.14 0.72 16 27 C -0.13 -1.44 7.15 31.18 0.22 -1.22 16 28 C -0.14 -1.21 8.09 31.18 0.25 -0.96 16 29 C -0.13 -1.32 6.82 31.12 0.21 -1.11 16 30 H 0.03 0.41 8.06 -2.39 -0.02 0.39 16 31 H 0.07 1.05 7.49 -2.39 -0.02 1.03 16 32 H 0.06 1.39 6.02 -2.39 -0.01 1.37 16 33 H 0.09 0.69 8.06 -2.39 -0.02 0.67 16 34 H 0.12 1.12 7.24 -2.38 -0.02 1.10 16 35 H 0.41 3.48 8.70 -92.71 -0.81 2.67 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.35 10.79 8.25 -89.69 -0.74 10.05 16 39 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 41 H 0.40 19.17 7.90 -92.70 -0.73 18.44 16 42 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 43 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -73.74 412.89 -3.63 -77.37 By element: Atomic # 1 Polarization: 43.02 SS G_CDS: -1.33 Total: 41.70 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 6.45 Total: 14.99 kcal Atomic # 7 Polarization: -117.58 SS G_CDS: -10.69 Total: -128.27 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -0.09 Total: -50.68 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -73.74 -3.63 -77.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566793018.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.477 kcal (2) G-P(sol) polarization free energy of solvation -73.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds