Wall clock time and date at job start Tue Mar 31 2020 20:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46844 * 110.99769 * 2 1 4 4 C 1.53036 * 109.52333 * 174.16328 * 3 2 1 5 5 C 1.53124 * 109.27764 * 59.18050 * 4 3 2 6 6 C 1.53121 * 109.15785 * 302.34642 * 5 4 3 7 7 C 1.46849 * 110.99918 * 235.79353 * 2 1 3 8 8 H 1.09005 * 109.45259 * 65.82587 * 7 2 1 9 9 C 1.50703 * 109.46044 * 305.85188 * 7 2 1 10 10 O 1.21275 * 119.99851 * 339.95037 * 9 7 2 11 11 N 1.34777 * 119.99549 * 159.94274 * 9 7 2 12 12 C 1.46508 * 119.99631 * 179.97438 * 11 9 7 13 13 H 1.08998 * 112.90675 * 23.75697 * 12 11 9 14 14 C 1.53775 * 113.61059 * 155.00347 * 12 11 9 15 15 C 1.53778 * 87.08071 * 139.98519 * 14 12 11 16 16 H 1.08996 * 113.61901 * 89.19864 * 15 14 12 17 17 N 1.46901 * 113.61401 * 220.02035 * 15 14 12 18 18 C 1.46902 * 110.99844 * 204.99515 * 17 15 14 19 19 C 1.50702 * 109.47027 * 179.97438 * 18 17 15 20 20 O 1.21293 * 120.00255 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99928 * 179.72353 * 19 18 17 22 22 C 1.37101 * 120.00327 * 180.27606 * 21 19 18 23 23 H 1.08001 * 119.99426 * 0.02562 * 22 21 19 24 24 C 1.38942 * 120.00412 * 180.02562 * 22 21 19 25 25 N 1.31414 * 120.00005 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00057 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46867 * 90.00263 * 26 24 22 28 28 H 1.48501 * 109.47216 * 210.00120 * 26 24 22 29 29 H 1.48499 * 109.47135 * 330.00462 * 26 24 22 30 30 C 1.53781 * 113.61564 * 252.50343 * 12 11 9 31 31 H 1.09000 * 109.46877 * 184.21337 * 1 2 3 32 32 H 1.09005 * 109.46643 * 304.20423 * 1 2 3 33 33 H 1.08994 * 109.47176 * 64.20706 * 1 2 3 34 34 H 1.08993 * 109.46520 * 54.14878 * 3 2 1 35 35 H 1.09004 * 109.45851 * 294.17384 * 3 2 1 36 36 H 1.09003 * 109.50256 * 299.24131 * 4 3 2 37 37 H 1.08999 * 109.50759 * 179.12339 * 4 3 2 38 38 H 1.09002 * 109.52070 * 182.44230 * 5 4 3 39 39 H 1.08994 * 109.57680 * 62.28447 * 5 4 3 40 40 H 1.09004 * 109.50327 * 297.70893 * 6 5 4 41 41 H 1.09006 * 109.53241 * 177.61601 * 6 5 4 42 42 H 0.96997 * 120.00475 * 0.02562 * 11 9 7 43 43 H 1.09003 * 113.61875 * 25.43879 * 14 12 11 44 44 H 1.08999 * 113.61684 * 254.52683 * 14 12 11 45 45 H 1.00902 * 111.00235 * 81.04752 * 17 15 14 46 46 H 1.09004 * 109.47131 * 60.00016 * 18 17 15 47 47 H 1.09000 * 109.47732 * 300.00127 * 18 17 15 48 48 H 0.97000 * 120.00317 * 0.28382 * 21 19 18 49 49 H 0.96996 * 120.00330 * 179.97438 * 25 24 22 50 50 H 1.08996 * 113.61328 * 105.47301 * 30 12 11 51 51 H 1.09000 * 113.61134 * 334.56445 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1187 0.5371 -1.0145 6 6 3.5181 -0.8714 -1.0210 7 6 1.9953 -0.7707 -1.1338 8 1 1.7324 -0.2706 -2.0660 9 6 1.3982 -2.1544 -1.1206 10 8 0.9174 -2.5976 -0.0993 11 7 1.3986 -2.8991 -2.2440 12 6 0.8187 -4.2445 -2.2310 13 1 0.0808 -4.3808 -1.4405 14 6 0.3375 -4.7210 -3.6116 15 6 0.9063 -6.1022 -3.2458 16 1 0.1919 -6.7470 -2.7340 17 7 1.5831 -6.7745 -4.3629 18 6 1.5762 -8.2323 -4.1819 19 6 2.2771 -8.8862 -5.3448 20 8 2.7376 -8.2048 -6.2364 21 7 2.3977 -10.2278 -5.3911 22 6 3.0403 -10.8223 -6.4462 23 1 3.4502 -10.2156 -7.2400 24 6 3.1641 -12.2054 -6.4942 25 7 2.6648 -12.9437 -5.5285 26 14 4.0390 -13.0155 -7.9322 27 1 5.4854 -13.1454 -7.6219 28 1 3.4605 -14.3626 -8.1684 29 1 3.8668 -12.1824 -9.1493 30 6 1.8669 -5.3678 -2.2957 31 1 -0.3633 -1.0249 0.0755 32 1 -0.3633 0.5777 0.8500 33 1 -0.3633 0.4471 -0.9252 34 1 1.5635 1.9257 0.8329 35 1 1.7324 1.8608 -0.9377 36 1 3.7814 0.8567 1.0905 37 1 3.9099 2.3513 0.1310 38 1 5.1997 0.4715 -0.8907 39 1 3.8896 1.0351 -1.9566 40 1 3.7814 -1.3836 -0.0955 41 1 3.9098 -1.4308 -1.8706 42 1 1.7834 -2.5447 -3.0608 43 1 0.8544 -4.2424 -4.4434 44 1 -0.7466 -4.7111 -3.7236 45 1 2.5243 -6.4288 -4.4763 46 1 0.5468 -8.5874 -4.1323 47 1 2.0930 -8.4861 -3.2564 48 1 2.0297 -10.7727 -4.6780 49 1 2.7509 -13.9093 -5.5621 50 1 2.0174 -5.8798 -1.3453 51 1 2.8019 -5.0658 -2.7677 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566844697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:36 Heat of formation + Delta-G solvation = -47.737379 kcal Electronic energy + Delta-G solvation = -28944.407559 eV Core-core repulsion = 24878.979482 eV Total energy + Delta-G solvation = -4065.428077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.82703 -39.47427 -38.23396 -37.72608 -34.69839 -33.98888 -33.74676 -32.69175 -31.35501 -31.15385 -27.35642 -26.80086 -25.79695 -24.94992 -24.08041 -23.36766 -22.45549 -20.81839 -20.35194 -19.88379 -19.13470 -17.88606 -17.48577 -16.87743 -16.08707 -15.76292 -15.71242 -15.44048 -15.13102 -14.83700 -14.73585 -14.60229 -14.47751 -14.07719 -13.80800 -13.48089 -13.43015 -13.30119 -13.10411 -12.88780 -12.58989 -12.48116 -12.15707 -12.02089 -11.82059 -11.64356 -11.56126 -11.35016 -11.23242 -11.15901 -11.06598 -10.97878 -10.88767 -10.79761 -10.39766 -10.22078 -9.79087 -9.51493 -9.21922 -8.70367 -8.45643 -8.03281 -7.95675 -6.42020 -3.82987 2.34279 2.76862 3.17472 3.26201 3.32162 3.53306 3.90507 4.09880 4.23183 4.29101 4.31798 4.45828 4.47757 4.55871 4.63347 4.69006 4.75903 4.80968 4.87516 5.01376 5.07179 5.13551 5.17818 5.22394 5.27175 5.29493 5.42941 5.47149 5.47455 5.61173 5.64907 5.66388 5.66985 5.73561 5.78672 5.82715 5.90211 5.91053 5.97728 6.01491 6.26620 6.37151 6.54830 6.65849 7.22490 7.28355 7.54789 7.64148 8.00000 8.05917 8.60767 9.17403 9.53967 10.05251 10.75663 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027652 B = 0.001619 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.353701 B =17287.732009 C =17821.586278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.520 5.520 3 C 0.056 3.944 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.108 4.108 7 C 0.070 3.930 8 H 0.060 0.940 9 C 0.517 3.483 10 O -0.521 6.521 11 N -0.717 5.717 12 C 0.123 3.877 13 H 0.114 0.886 14 C -0.133 4.133 15 C 0.071 3.929 16 H 0.100 0.900 17 N -0.655 5.655 18 C 0.049 3.951 19 C 0.440 3.560 20 O -0.585 6.585 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 C -0.181 4.181 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.020 0.980 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.400 0.600 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.351 0.649 46 H 0.086 0.914 47 H 0.045 0.955 48 H 0.392 0.608 49 H 0.271 0.729 50 H 0.071 0.929 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 27.041 11.967 29.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.072 4.072 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.146 4.146 7 C -0.042 4.042 8 H 0.078 0.922 9 C 0.303 3.697 10 O -0.396 6.396 11 N -0.369 5.369 12 C 0.017 3.983 13 H 0.132 0.868 14 C -0.172 4.172 15 C -0.041 4.041 16 H 0.118 0.882 17 N -0.286 5.286 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.469 6.469 21 N -0.200 5.200 22 C -0.430 4.430 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 C -0.221 4.221 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.038 0.962 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.235 0.765 43 H 0.110 0.890 44 H 0.094 0.906 45 H 0.172 0.828 46 H 0.105 0.895 47 H 0.063 0.937 48 H 0.226 0.774 49 H 0.081 0.919 50 H 0.090 0.910 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.982 26.717 12.144 29.499 hybrid contribution 0.734 -0.415 -0.681 1.083 sum -2.248 26.302 11.463 28.779 Atomic orbital electron populations 1.22597 0.86518 1.04251 0.99992 1.61648 1.08302 1.13045 1.41545 1.22149 0.95774 0.88568 1.00676 1.21626 0.94289 1.00291 0.99556 1.21578 1.00376 0.95070 0.98721 1.21556 0.91362 0.98149 1.03538 1.21617 0.96647 0.92172 0.93776 0.92219 1.20458 0.78893 0.86885 0.83513 1.90679 1.44872 1.72532 1.31523 1.46031 1.61396 1.16726 1.12719 1.22410 0.96451 0.80063 0.99333 0.86775 1.23470 1.01614 0.96187 0.95910 1.22814 0.96699 0.94127 0.90435 0.88232 1.60016 1.24399 1.03507 1.40663 1.21727 1.01260 0.88539 0.96808 1.19831 0.85683 0.83120 0.88812 1.90517 1.52976 1.63019 1.40416 1.41870 1.50549 1.04785 1.22791 1.19705 1.31900 0.90090 1.01271 0.87927 1.25265 0.97879 0.96298 0.98501 1.69612 1.45675 1.06305 1.32673 0.85853 0.79094 0.78280 0.81027 1.20437 1.20913 1.19415 1.24234 0.98812 0.97807 1.01281 0.89281 0.91213 0.96178 0.90282 0.94880 0.90784 0.91274 0.91094 0.91970 0.90240 0.90815 0.76511 0.89039 0.90644 0.82841 0.89548 0.93714 0.77439 0.91864 0.91039 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.10 60.07 0.55 0.67 16 2 N -0.52 -4.66 4.51 -236.33 -1.07 -5.72 16 3 C 0.06 0.37 5.46 -3.84 -0.02 0.35 16 4 C -0.12 -0.69 6.09 -26.65 -0.16 -0.86 16 5 C -0.12 -0.67 6.00 -26.60 -0.16 -0.83 16 6 C -0.11 -0.77 5.35 -26.65 -0.14 -0.91 16 7 C 0.07 0.57 2.24 -68.88 -0.15 0.42 16 8 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 9 C 0.52 5.34 6.26 -10.98 -0.07 5.27 16 10 O -0.52 -7.34 14.13 5.56 0.08 -7.26 16 11 N -0.72 -6.12 5.35 -53.02 -0.28 -6.40 16 12 C 0.12 1.18 4.24 -67.12 -0.28 0.89 16 13 H 0.11 1.23 7.47 -51.93 -0.39 0.84 16 14 C -0.13 -1.29 7.63 -25.92 -0.20 -1.49 16 15 C 0.07 0.82 4.18 -66.90 -0.28 0.54 16 16 H 0.10 1.10 7.87 -51.93 -0.41 0.69 16 17 N -0.65 -10.12 6.24 -107.13 -0.67 -10.79 16 18 C 0.05 0.85 6.01 -4.97 -0.03 0.82 16 19 C 0.44 10.33 7.82 -10.98 -0.09 10.25 16 20 O -0.58 -15.79 15.78 5.55 0.09 -15.70 16 21 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 22 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 23 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 26 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 29 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 30 C -0.18 -1.89 7.49 -25.92 -0.19 -2.08 16 31 H 0.09 0.98 5.63 -51.93 -0.29 0.68 16 32 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.40 2.54 8.73 -40.82 -0.36 2.18 16 43 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.35 5.60 7.90 -39.29 -0.31 5.29 16 46 H 0.09 1.39 8.13 -51.93 -0.42 0.96 16 47 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 49 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 50 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.09 0.91 7.82 -51.93 -0.41 0.50 16 LS Contribution 407.20 15.07 6.14 6.14 Total: -1.00 -33.16 407.20 -10.30 -43.46 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -8.75 Total: 13.37 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -1.48 Total: 5.03 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -1.35 Total: -61.04 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: 0.17 Total: -22.96 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.16 -10.30 -43.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566844697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.279 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds