Wall clock time and date at job start Tue Mar 31 2020 20:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46844 * 110.99769 * 2 1 4 4 C 1.53036 * 109.52333 * 174.16328 * 3 2 1 5 5 C 1.53124 * 109.27764 * 59.18050 * 4 3 2 6 6 C 1.53121 * 109.15785 * 302.34642 * 5 4 3 7 7 C 1.46849 * 110.99918 * 235.79353 * 2 1 3 8 8 H 1.09005 * 109.45259 * 65.82587 * 7 2 1 9 9 C 1.50703 * 109.46044 * 305.85188 * 7 2 1 10 10 O 1.21275 * 119.99851 * 339.95037 * 9 7 2 11 11 N 1.34777 * 119.99549 * 159.94274 * 9 7 2 12 12 C 1.46508 * 119.99631 * 179.97438 * 11 9 7 13 13 H 1.08998 * 112.90675 * 23.75697 * 12 11 9 14 14 C 1.53775 * 113.61059 * 155.00347 * 12 11 9 15 15 C 1.53778 * 87.08071 * 139.98519 * 14 12 11 16 16 H 1.08996 * 113.61901 * 89.19864 * 15 14 12 17 17 N 1.46901 * 113.61401 * 220.02035 * 15 14 12 18 18 C 1.46902 * 110.99844 * 204.99515 * 17 15 14 19 19 C 1.50702 * 109.47027 * 179.97438 * 18 17 15 20 20 O 1.21293 * 120.00255 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99928 * 179.72353 * 19 18 17 22 22 C 1.37101 * 120.00327 * 180.27606 * 21 19 18 23 23 H 1.08001 * 119.99426 * 0.02562 * 22 21 19 24 24 C 1.38942 * 120.00412 * 180.02562 * 22 21 19 25 25 N 1.31414 * 120.00005 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00057 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46867 * 90.00263 * 26 24 22 28 28 H 1.48501 * 109.47216 * 210.00120 * 26 24 22 29 29 H 1.48499 * 109.47135 * 330.00462 * 26 24 22 30 30 C 1.53781 * 113.61564 * 252.50343 * 12 11 9 31 31 H 1.09000 * 109.46877 * 184.21337 * 1 2 3 32 32 H 1.09005 * 109.46643 * 304.20423 * 1 2 3 33 33 H 1.08994 * 109.47176 * 64.20706 * 1 2 3 34 34 H 1.08993 * 109.46520 * 54.14878 * 3 2 1 35 35 H 1.09004 * 109.45851 * 294.17384 * 3 2 1 36 36 H 1.09003 * 109.50256 * 299.24131 * 4 3 2 37 37 H 1.08999 * 109.50759 * 179.12339 * 4 3 2 38 38 H 1.09002 * 109.52070 * 182.44230 * 5 4 3 39 39 H 1.08994 * 109.57680 * 62.28447 * 5 4 3 40 40 H 1.09004 * 109.50327 * 297.70893 * 6 5 4 41 41 H 1.09006 * 109.53241 * 177.61601 * 6 5 4 42 42 H 0.96997 * 120.00475 * 0.02562 * 11 9 7 43 43 H 1.09003 * 113.61875 * 25.43879 * 14 12 11 44 44 H 1.08999 * 113.61684 * 254.52683 * 14 12 11 45 45 H 1.00902 * 111.00235 * 81.04752 * 17 15 14 46 46 H 1.09004 * 109.47131 * 60.00016 * 18 17 15 47 47 H 1.09000 * 109.47732 * 300.00127 * 18 17 15 48 48 H 0.97000 * 120.00317 * 0.28382 * 21 19 18 49 49 H 0.96996 * 120.00330 * 179.97438 * 25 24 22 50 50 H 1.08996 * 113.61328 * 105.47301 * 30 12 11 51 51 H 1.09000 * 113.61134 * 334.56445 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1187 0.5371 -1.0145 6 6 3.5181 -0.8714 -1.0210 7 6 1.9953 -0.7707 -1.1338 8 1 1.7324 -0.2706 -2.0660 9 6 1.3982 -2.1544 -1.1206 10 8 0.9174 -2.5976 -0.0993 11 7 1.3986 -2.8991 -2.2440 12 6 0.8187 -4.2445 -2.2310 13 1 0.0808 -4.3808 -1.4405 14 6 0.3375 -4.7210 -3.6116 15 6 0.9063 -6.1022 -3.2458 16 1 0.1919 -6.7470 -2.7340 17 7 1.5831 -6.7745 -4.3629 18 6 1.5762 -8.2323 -4.1819 19 6 2.2771 -8.8862 -5.3448 20 8 2.7376 -8.2048 -6.2364 21 7 2.3977 -10.2278 -5.3911 22 6 3.0403 -10.8223 -6.4462 23 1 3.4502 -10.2156 -7.2400 24 6 3.1641 -12.2054 -6.4942 25 7 2.6648 -12.9437 -5.5285 26 14 4.0390 -13.0155 -7.9322 27 1 5.4854 -13.1454 -7.6219 28 1 3.4605 -14.3626 -8.1684 29 1 3.8668 -12.1824 -9.1493 30 6 1.8669 -5.3678 -2.2957 31 1 -0.3633 -1.0249 0.0755 32 1 -0.3633 0.5777 0.8500 33 1 -0.3633 0.4471 -0.9252 34 1 1.5635 1.9257 0.8329 35 1 1.7324 1.8608 -0.9377 36 1 3.7814 0.8567 1.0905 37 1 3.9099 2.3513 0.1310 38 1 5.1997 0.4715 -0.8907 39 1 3.8896 1.0351 -1.9566 40 1 3.7814 -1.3836 -0.0955 41 1 3.9098 -1.4308 -1.8706 42 1 1.7834 -2.5447 -3.0608 43 1 0.8544 -4.2424 -4.4434 44 1 -0.7466 -4.7111 -3.7236 45 1 2.5243 -6.4288 -4.4763 46 1 0.5468 -8.5874 -4.1323 47 1 2.0930 -8.4861 -3.2564 48 1 2.0297 -10.7727 -4.6780 49 1 2.7509 -13.9093 -5.5621 50 1 2.0174 -5.8798 -1.3453 51 1 2.8019 -5.0658 -2.7677 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566844697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:35 Heat of formation + Delta-G solvation = -73.858425 kcal Electronic energy + Delta-G solvation = -28945.540253 eV Core-core repulsion = 24878.979482 eV Total energy + Delta-G solvation = -4066.560771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59146 -40.44873 -39.81661 -38.62277 -36.12712 -35.48332 -34.46512 -33.73196 -33.20912 -31.93616 -28.49369 -27.82279 -26.63607 -26.25017 -25.27293 -23.98689 -23.31223 -21.60140 -21.30441 -20.85974 -20.48095 -19.87817 -18.23520 -17.90754 -17.40408 -16.91007 -16.52315 -16.42266 -16.35751 -15.94410 -15.78217 -15.76569 -15.45105 -15.26462 -14.86720 -14.64527 -14.36301 -14.20893 -13.97831 -13.84034 -13.53236 -13.46367 -13.42284 -13.16172 -13.01581 -12.82574 -12.69765 -12.42167 -12.40480 -12.14074 -12.13022 -11.94242 -11.85891 -11.73225 -11.64073 -11.50271 -11.34924 -10.59104 -10.32915 -10.03472 -10.01301 -9.30671 -9.23863 -8.46456 -5.95413 1.38339 1.42191 1.55043 1.55333 2.04573 2.05650 2.29740 2.90373 2.99571 3.20807 3.44507 3.57621 3.66298 3.73918 3.82579 3.92453 3.96547 4.00419 4.05950 4.15329 4.28120 4.33326 4.44648 4.48323 4.49645 4.54284 4.57140 4.64114 4.74962 4.78684 4.79969 4.80928 4.95637 4.99214 5.02394 5.03159 5.08628 5.14293 5.17237 5.23571 5.41109 5.43618 5.56890 5.92112 5.93974 6.09672 6.14399 6.41541 6.57377 6.60189 7.12592 7.24776 7.56467 8.11402 8.70854 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027652 B = 0.001619 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.353701 B =17287.732009 C =17821.586278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.542 5.542 3 C 0.055 3.945 4 C -0.119 4.119 5 C -0.117 4.117 6 C -0.106 4.106 7 C 0.073 3.927 8 H 0.079 0.921 9 C 0.515 3.485 10 O -0.563 6.563 11 N -0.706 5.706 12 C 0.130 3.870 13 H 0.104 0.896 14 C -0.121 4.121 15 C 0.067 3.933 16 H 0.108 0.892 17 N -0.666 5.666 18 C 0.063 3.937 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.574 5.574 22 C -0.335 4.335 23 H 0.080 0.920 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.994 3.006 27 H -0.271 1.271 28 H -0.271 1.271 29 H -0.273 1.273 30 C -0.174 4.174 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.030 0.970 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.414 0.586 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.347 0.653 46 H 0.104 0.896 47 H 0.065 0.935 48 H 0.396 0.604 49 H 0.277 0.723 50 H 0.066 0.934 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.332 28.185 11.625 30.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.268 5.268 3 C -0.072 4.072 4 C -0.156 4.156 5 C -0.154 4.154 6 C -0.144 4.144 7 C -0.039 4.039 8 H 0.097 0.903 9 C 0.302 3.698 10 O -0.441 6.441 11 N -0.358 5.358 12 C 0.024 3.976 13 H 0.122 0.878 14 C -0.160 4.160 15 C -0.044 4.044 16 H 0.126 0.874 17 N -0.297 5.297 18 C -0.069 4.069 19 C 0.225 3.775 20 O -0.510 6.510 21 N -0.211 5.211 22 C -0.464 4.464 23 H 0.098 0.902 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.196 1.196 28 H -0.196 1.196 29 H -0.198 1.198 30 C -0.215 4.215 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.250 0.750 43 H 0.113 0.887 44 H 0.102 0.898 45 H 0.166 0.834 46 H 0.122 0.878 47 H 0.083 0.917 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.085 0.915 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.785 27.877 11.806 30.401 hybrid contribution 0.652 -0.724 -0.537 1.112 sum -2.133 27.153 11.269 29.475 Atomic orbital electron populations 1.22491 0.86777 1.02796 1.00840 1.61636 1.08334 1.14506 1.42287 1.22217 0.96217 0.87377 1.01361 1.21632 0.93803 1.01232 0.98964 1.21580 1.00662 0.93955 0.99216 1.21563 0.90728 0.99271 1.02865 1.21647 0.97010 0.90778 0.94451 0.90325 1.20909 0.78143 0.87690 0.83075 1.90663 1.46809 1.73561 1.33114 1.45929 1.60746 1.16146 1.12959 1.22205 0.95931 0.80432 0.98985 0.87827 1.23383 1.02081 0.94682 0.95832 1.22951 0.96964 0.94725 0.89785 0.87377 1.60049 1.24407 1.02404 1.42824 1.21594 1.01447 0.89434 0.94418 1.20908 0.84479 0.82429 0.89707 1.90484 1.54386 1.63713 1.42405 1.41948 1.50938 1.05663 1.22523 1.19681 1.33838 0.90813 1.02111 0.90249 1.26050 0.98086 0.96243 1.00930 1.69673 1.45896 1.06773 1.33781 0.84918 0.78247 0.77455 0.77652 1.19618 1.19589 1.19754 1.24167 0.98864 0.97815 1.00657 0.91820 0.90535 0.95140 0.89896 0.93868 0.92209 0.89463 0.90363 0.90685 0.92492 0.89656 0.74967 0.88705 0.89821 0.83363 0.87760 0.91698 0.76991 0.91313 0.91549 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.10 127.69 1.16 1.48 16 2 N -0.54 -9.28 4.51 -901.60 -4.07 -13.34 16 3 C 0.06 0.64 5.46 86.33 0.47 1.12 16 4 C -0.12 -1.17 6.09 30.65 0.19 -0.98 16 5 C -0.12 -1.07 6.00 30.68 0.18 -0.89 16 6 C -0.11 -1.38 5.35 30.64 0.16 -1.21 16 7 C 0.07 1.10 2.24 44.19 0.10 1.20 16 8 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 9 C 0.52 10.37 6.26 87.66 0.55 10.92 16 10 O -0.56 -16.15 14.13 -3.02 -0.04 -16.19 16 11 N -0.71 -11.17 5.35 -440.04 -2.36 -13.52 16 12 C 0.13 2.36 4.24 45.51 0.19 2.55 16 13 H 0.10 2.18 7.47 -2.39 -0.02 2.16 16 14 C -0.12 -2.14 7.63 31.12 0.24 -1.90 16 15 C 0.07 1.43 4.18 45.44 0.19 1.62 16 16 H 0.11 2.17 7.87 -2.39 -0.02 2.15 16 17 N -0.67 -19.79 6.24 -492.84 -3.08 -22.86 16 18 C 0.06 2.12 6.01 85.56 0.51 2.64 16 19 C 0.44 20.63 7.82 87.66 0.69 21.32 16 20 O -0.62 -34.18 15.78 -3.07 -0.05 -34.23 16 21 N -0.57 -29.40 5.29 -306.98 -1.62 -31.02 16 22 C -0.33 -19.03 9.68 84.04 0.81 -18.21 16 23 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 24 C -0.01 -0.71 5.50 84.92 0.47 -0.25 16 25 N -0.92 -49.70 13.05 21.66 0.28 -49.41 16 26 Si 0.99 42.85 29.55 68.60 2.03 44.88 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 30 C -0.17 -3.43 7.49 31.12 0.23 -3.20 16 31 H 0.06 1.43 5.63 -2.39 -0.01 1.42 16 32 H 0.08 1.14 8.09 -2.38 -0.02 1.12 16 33 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 35 H 0.04 0.42 8.14 -2.38 -0.02 0.40 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 37 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.41 4.42 8.73 -92.71 -0.81 3.61 16 43 H 0.09 1.66 8.12 -2.39 -0.02 1.64 16 44 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.35 10.79 7.90 -89.69 -0.71 10.08 16 46 H 0.10 3.15 8.13 -2.38 -0.02 3.13 16 47 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.40 19.31 7.90 -92.71 -0.73 18.57 16 49 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 50 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 51 H 0.09 1.74 7.82 -2.39 -0.02 1.72 16 Total: -1.00 -72.45 407.20 -4.05 -76.50 By element: Atomic # 1 Polarization: 44.31 SS G_CDS: -1.30 Total: 43.01 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 6.15 Total: 16.20 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -10.84 Total: -130.16 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -0.09 Total: -50.42 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -72.45 -4.05 -76.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566844697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.644 kcal (2) G-P(sol) polarization free energy of solvation -72.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds