Wall clock time and date at job start Tue Mar 31 2020 20:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 119.99782 * 2 1 4 4 C 1.53001 * 109.47193 * 276.22583 * 3 2 1 5 5 N 1.46894 * 109.47444 * 186.19772 * 4 3 2 6 6 C 1.46896 * 111.00226 * 190.00016 * 5 4 3 7 7 C 1.53239 * 109.34068 * 187.25676 * 6 5 4 8 8 N 1.47079 * 108.52173 * 306.16739 * 7 6 5 9 9 C 1.36932 * 120.88526 * 231.19087 * 8 7 6 10 10 H 1.07999 * 119.99999 * 15.29796 * 9 8 7 11 11 C 1.38811 * 120.00114 * 195.02316 * 9 8 7 12 12 N 1.31616 * 119.99888 * 27.06012 * 11 9 8 13 13 Si 1.86804 * 119.99999 * 207.06014 * 11 9 8 14 14 H 1.48501 * 109.47140 * 94.99871 * 13 11 9 15 15 H 1.48499 * 109.47086 * 214.99307 * 13 11 9 16 16 H 1.48498 * 109.47075 * 334.99756 * 13 11 9 17 17 C 1.47082 * 118.23646 * 51.45967 * 8 7 6 18 18 C 1.46902 * 111.00267 * 314.30543 * 5 4 3 19 19 C 1.34775 * 119.99567 * 179.97438 * 2 1 3 20 20 O 1.21278 * 120.00392 * 6.90372 * 19 2 1 21 21 C 1.50705 * 119.99669 * 186.90642 * 19 2 1 22 22 H 1.08998 * 109.60230 * 45.75943 * 21 19 2 23 23 C 1.53348 * 109.60495 * 166.08438 * 21 19 2 24 24 C 1.53067 * 108.42386 * 187.28485 * 23 21 19 25 25 C 1.50166 * 109.89228 * 311.09978 * 24 23 21 26 26 O 1.21283 * 118.24397 * 197.55921 * 25 24 23 27 27 N 1.33356 * 123.51404 * 17.58571 * 25 24 23 28 28 C 1.45820 * 124.15981 * 357.95196 * 27 25 24 29 29 H 1.09000 * 109.47221 * 95.11153 * 1 2 3 30 30 H 1.08994 * 109.47673 * 215.11237 * 1 2 3 31 31 H 1.09004 * 109.47418 * 335.11419 * 1 2 3 32 32 H 1.09009 * 109.46948 * 156.22880 * 3 2 1 33 33 H 1.08996 * 109.47793 * 36.23070 * 3 2 1 34 34 H 1.09003 * 109.46966 * 66.19446 * 4 3 2 35 35 H 1.09004 * 109.47173 * 306.20196 * 4 3 2 36 36 H 1.08997 * 109.49119 * 67.29502 * 6 5 4 37 37 H 1.09005 * 109.49312 * 307.21529 * 6 5 4 38 38 H 1.09003 * 109.62674 * 186.46683 * 7 6 5 39 39 H 1.08994 * 109.63121 * 65.87961 * 7 6 5 40 40 H 0.97008 * 119.99742 * 180.02562 * 12 11 9 41 41 H 1.09002 * 109.62669 * 68.24878 * 17 8 7 42 42 H 1.08999 * 109.63161 * 188.83410 * 17 8 7 43 43 H 1.09002 * 109.49082 * 292.70668 * 18 5 4 44 44 H 1.09005 * 109.49246 * 52.75440 * 18 5 4 45 45 H 1.08998 * 109.66956 * 307.02312 * 23 21 19 46 46 H 1.08996 * 109.67367 * 67.55079 * 23 21 19 47 47 H 1.09003 * 109.39886 * 71.23491 * 24 23 21 48 48 H 1.08998 * 109.39538 * 190.96820 * 24 23 21 49 49 H 0.96995 * 117.95406 * 177.77741 * 27 25 24 50 50 H 1.08998 * 109.18063 * 258.53596 * 28 27 25 51 51 H 1.09004 * 109.45629 * 139.14308 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3169 1.7886 -1.4340 5 7 3.1760 2.9800 -1.4529 6 6 3.1256 3.6447 -2.7620 7 6 4.1659 4.7692 -2.8006 8 7 3.9424 5.6523 -1.6458 9 6 3.8293 7.0072 -1.8085 10 1 3.6560 7.4204 -2.7911 11 6 3.9317 7.8491 -0.7097 12 7 4.6325 7.4779 0.3408 13 14 3.0750 9.5091 -0.7218 14 1 1.7514 9.3879 -0.0595 15 1 3.9052 10.5000 0.0089 16 1 2.8872 9.9589 -2.1245 17 6 3.8495 5.0420 -0.3108 18 6 2.8159 3.9061 -0.3709 19 6 2.1388 -1.1672 0.0005 20 8 1.5390 -2.2138 -0.1253 21 6 3.6376 -1.1719 0.1575 22 1 3.9225 -0.5019 0.9686 23 6 4.1176 -2.5939 0.4723 24 6 5.6104 -2.5380 0.8056 25 6 6.3391 -1.7488 -0.2439 26 8 7.5432 -1.8712 -0.3211 27 7 5.7331 -0.9203 -1.0952 28 6 4.2913 -0.7080 -1.1448 29 1 -0.3634 -0.0916 -1.0236 30 1 -0.3634 -0.8406 0.5910 31 1 -0.3634 0.9323 0.4325 32 1 3.1937 1.1131 0.4143 33 1 1.6613 1.9979 0.6073 34 1 1.3273 2.0482 -1.8100 35 1 2.7542 1.0153 -2.0656 36 1 2.1316 4.0631 -2.9193 37 1 3.3440 2.9201 -3.5465 38 1 4.0555 5.3386 -3.7235 39 1 5.1677 4.3433 -2.7473 40 1 4.7037 8.0662 1.1088 41 1 4.8216 4.6416 -0.0228 42 1 3.5300 5.7916 0.4131 43 1 1.8261 4.3209 -0.5616 44 1 2.8092 3.3709 0.5787 45 1 3.5653 -2.9870 1.3259 46 1 3.9589 -3.2351 -0.3947 47 1 5.7470 -2.0619 1.7766 48 1 6.0117 -3.5508 0.8408 49 1 6.2863 -0.4255 -1.7196 50 1 3.8745 -1.2732 -1.9784 51 1 4.0853 0.3520 -1.2935 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567719851.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:38 Heat of formation + Delta-G solvation = -25.553599 kcal Electronic energy + Delta-G solvation = -31165.592194 eV Core-core repulsion = 27101.126077 eV Total energy + Delta-G solvation = -4064.466116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.12133 -39.72674 -38.44897 -36.46058 -36.23887 -34.37741 -33.26362 -31.70672 -30.72694 -30.03513 -29.16748 -27.21737 -26.03020 -24.95991 -23.74662 -23.21107 -22.66049 -21.65199 -20.18475 -19.23231 -18.79609 -17.86902 -17.35615 -16.90582 -16.54674 -16.07470 -15.69332 -15.60881 -15.05048 -14.82776 -14.58749 -14.40824 -14.29928 -14.14330 -13.84527 -13.55877 -13.53206 -13.40196 -13.10513 -12.93645 -12.63002 -12.28945 -12.20272 -12.12181 -12.03479 -11.64454 -11.51004 -11.35296 -11.23149 -11.12684 -10.78909 -10.58803 -10.42223 -10.16434 -10.08946 -9.92131 -9.81104 -9.72472 -9.27949 -8.99030 -8.53595 -8.02128 -6.90338 -5.88006 -3.15368 2.20252 2.48393 2.60643 3.08993 3.33712 3.42587 3.43506 3.92244 4.22418 4.26487 4.32200 4.42661 4.45581 4.59540 4.79808 4.83681 4.89050 5.02432 5.07207 5.17534 5.23293 5.25683 5.28052 5.29974 5.35315 5.46758 5.47458 5.55006 5.58157 5.73441 5.79174 5.79725 5.83848 5.98237 6.05463 6.13697 6.21103 6.37278 6.53675 6.57577 6.78218 6.97543 7.12530 7.14662 7.38094 7.47934 7.58768 7.74304 7.80395 8.03598 8.29229 9.11299 9.77933 10.30804 11.20660 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.002963 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.315801 B = 9447.807359 C =10548.628199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.612 5.612 3 C 0.098 3.902 4 C 0.031 3.969 5 N -0.529 5.529 6 C 0.046 3.954 7 C 0.149 3.851 8 N -0.597 5.597 9 C -0.249 4.249 10 H 0.072 0.928 11 C -0.003 4.003 12 N -0.898 5.898 13 Si 0.894 3.106 14 H -0.289 1.289 15 H -0.292 1.292 16 H -0.280 1.280 17 C 0.166 3.834 18 C 0.028 3.972 19 C 0.526 3.474 20 O -0.534 6.534 21 C -0.127 4.127 22 H 0.108 0.892 23 C -0.102 4.102 24 C -0.136 4.136 25 C 0.518 3.482 26 O -0.558 6.558 27 N -0.713 5.713 28 C 0.107 3.893 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.034 0.966 35 H 0.075 0.925 36 H 0.030 0.970 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.026 0.974 40 H 0.254 0.746 41 H 0.024 0.976 42 H 0.103 0.897 43 H 0.028 0.972 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.103 0.897 48 H 0.105 0.895 49 H 0.405 0.595 50 H 0.069 0.931 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.521 -17.806 0.414 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.345 5.345 3 C -0.025 4.025 4 C -0.099 4.099 5 N -0.255 5.255 6 C -0.084 4.084 7 C 0.022 3.978 8 N -0.320 5.320 9 C -0.378 4.378 10 H 0.090 0.910 11 C -0.201 4.201 12 N -0.543 5.543 13 Si 0.724 3.276 14 H -0.216 1.216 15 H -0.219 1.219 16 H -0.205 1.205 17 C 0.040 3.960 18 C -0.101 4.101 19 C 0.313 3.687 20 O -0.410 6.410 21 C -0.148 4.148 22 H 0.126 0.874 23 C -0.140 4.140 24 C -0.176 4.176 25 C 0.305 3.695 26 O -0.437 6.437 27 N -0.365 5.365 28 C -0.017 4.017 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.121 0.879 43 H 0.046 0.954 44 H 0.082 0.918 45 H 0.102 0.898 46 H 0.098 0.902 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.242 0.758 50 H 0.087 0.913 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.860 -18.584 0.677 19.497 hybrid contribution -1.284 1.566 -0.374 2.059 sum -7.144 -17.018 0.303 18.459 Atomic orbital electron populations 1.21659 0.78847 1.02925 1.02163 1.47890 1.07243 1.06158 1.73250 1.22017 0.98241 0.84457 0.97819 1.22665 0.96290 0.94680 0.96228 1.62125 1.51411 1.06956 1.04999 1.22625 0.99638 0.96732 0.89404 1.20945 0.94940 0.90287 0.91586 1.44289 1.83530 1.02593 1.01589 1.19276 1.42308 0.81678 0.94560 0.91019 1.24728 0.99791 0.97764 0.97778 1.70112 1.38950 1.37619 1.07632 0.86372 0.79769 0.83851 0.77573 1.21631 1.21897 1.20501 1.21219 0.94243 0.91948 0.88556 1.23098 0.99523 0.94877 0.92577 1.20272 0.89133 0.83235 0.76069 1.90706 1.70129 1.31342 1.48853 1.21663 0.92402 1.00523 1.00250 0.87396 1.21500 0.94162 0.94551 1.03837 1.21684 0.95207 1.02081 0.98588 1.20188 0.87807 0.79354 0.82118 1.90775 1.15078 1.65957 1.71899 1.45389 1.08044 1.44869 1.38202 1.21695 0.80296 1.03669 0.96076 0.92601 0.90876 0.90826 0.88718 0.89478 0.94766 0.90730 0.95153 0.91987 0.92528 0.95594 0.93602 0.95802 0.87899 0.95418 0.91771 0.89758 0.90173 0.87924 0.87678 0.75823 0.91279 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 10.36 59.85 0.62 1.33 16 2 N -0.61 -5.62 2.87 -181.57 -0.52 -6.14 16 3 C 0.10 0.90 3.91 -4.04 -0.02 0.89 16 4 C 0.03 0.33 4.69 -3.83 -0.02 0.31 16 5 N -0.53 -7.62 4.78 -234.02 -1.12 -8.74 16 6 C 0.05 0.71 5.58 -3.70 -0.02 0.69 16 7 C 0.15 2.89 6.69 -3.60 -0.02 2.87 16 8 N -0.60 -14.11 3.06 -171.74 -0.53 -14.63 16 9 C -0.25 -6.57 9.69 -15.06 -0.15 -6.71 16 10 H 0.07 1.86 7.89 -52.49 -0.41 1.45 16 11 C 0.00 -0.08 4.82 -17.43 -0.08 -0.16 16 12 N -0.90 -24.99 10.98 55.49 0.61 -24.38 16 13 Si 0.89 20.94 29.63 -169.99 -5.04 15.90 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 C 0.17 3.68 5.67 -3.36 -0.02 3.66 16 18 C 0.03 0.47 5.07 -3.46 -0.02 0.45 16 19 C 0.53 5.36 6.89 -10.98 -0.08 5.28 16 20 O -0.53 -7.03 15.85 5.56 0.09 -6.94 16 21 C -0.13 -1.06 1.73 -91.63 -0.16 -1.22 16 22 H 0.11 0.82 6.91 -51.93 -0.36 0.46 16 23 C -0.10 -0.82 4.64 -26.52 -0.12 -0.94 16 24 C -0.14 -1.12 6.03 -28.11 -0.17 -1.29 16 25 C 0.52 5.96 7.71 -11.88 -0.09 5.87 16 26 O -0.56 -8.82 17.78 5.55 0.10 -8.72 16 27 N -0.71 -7.02 5.45 -61.35 -0.33 -7.35 16 28 C 0.11 0.91 5.74 -4.45 -0.03 0.89 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.62 7.69 -51.93 -0.40 0.22 16 31 H 0.07 0.50 7.90 -51.93 -0.41 0.09 16 32 H 0.09 0.85 5.36 -51.92 -0.28 0.58 16 33 H 0.09 0.81 6.42 -51.93 -0.33 0.48 16 34 H 0.03 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.07 0.74 6.00 -51.93 -0.31 0.43 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 38 H 0.06 1.07 7.90 -51.93 -0.41 0.66 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.10 2.58 5.54 -51.93 -0.29 2.29 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.90 5.87 -51.93 -0.30 0.60 16 45 H 0.08 0.64 8.11 -51.93 -0.42 0.22 16 46 H 0.08 0.70 8.13 -51.93 -0.42 0.27 16 47 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.41 3.95 8.80 -40.82 -0.36 3.59 16 50 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 51 H 0.11 0.94 4.03 -51.93 -0.21 0.73 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -32.49 387.09 -9.55 -42.04 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -8.28 Total: 1.22 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -0.37 Total: 11.90 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -1.89 Total: -61.24 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.19 Total: -15.66 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.04 Total: 15.90 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.49 -9.55 -42.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567719851.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.491 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds