Wall clock time and date at job start Tue Mar 31 2020 20:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 119.99782 * 2 1 4 4 C 1.53001 * 109.47193 * 276.22583 * 3 2 1 5 5 N 1.46894 * 109.47444 * 186.19772 * 4 3 2 6 6 C 1.46896 * 111.00226 * 190.00016 * 5 4 3 7 7 C 1.53239 * 109.34068 * 187.25676 * 6 5 4 8 8 N 1.47079 * 108.52173 * 306.16739 * 7 6 5 9 9 C 1.36932 * 120.88526 * 231.19087 * 8 7 6 10 10 H 1.07999 * 119.99999 * 15.29796 * 9 8 7 11 11 C 1.38811 * 120.00114 * 195.02316 * 9 8 7 12 12 N 1.31616 * 119.99888 * 27.06012 * 11 9 8 13 13 Si 1.86804 * 119.99999 * 207.06014 * 11 9 8 14 14 H 1.48501 * 109.47140 * 94.99871 * 13 11 9 15 15 H 1.48499 * 109.47086 * 214.99307 * 13 11 9 16 16 H 1.48498 * 109.47075 * 334.99756 * 13 11 9 17 17 C 1.47082 * 118.23646 * 51.45967 * 8 7 6 18 18 C 1.46902 * 111.00267 * 314.30543 * 5 4 3 19 19 C 1.34775 * 119.99567 * 179.97438 * 2 1 3 20 20 O 1.21278 * 120.00392 * 6.90372 * 19 2 1 21 21 C 1.50705 * 119.99669 * 186.90642 * 19 2 1 22 22 H 1.08998 * 109.60230 * 45.75943 * 21 19 2 23 23 C 1.53348 * 109.60495 * 166.08438 * 21 19 2 24 24 C 1.53067 * 108.42386 * 187.28485 * 23 21 19 25 25 C 1.50166 * 109.89228 * 311.09978 * 24 23 21 26 26 O 1.21283 * 118.24397 * 197.55921 * 25 24 23 27 27 N 1.33356 * 123.51404 * 17.58571 * 25 24 23 28 28 C 1.45820 * 124.15981 * 357.95196 * 27 25 24 29 29 H 1.09000 * 109.47221 * 95.11153 * 1 2 3 30 30 H 1.08994 * 109.47673 * 215.11237 * 1 2 3 31 31 H 1.09004 * 109.47418 * 335.11419 * 1 2 3 32 32 H 1.09009 * 109.46948 * 156.22880 * 3 2 1 33 33 H 1.08996 * 109.47793 * 36.23070 * 3 2 1 34 34 H 1.09003 * 109.46966 * 66.19446 * 4 3 2 35 35 H 1.09004 * 109.47173 * 306.20196 * 4 3 2 36 36 H 1.08997 * 109.49119 * 67.29502 * 6 5 4 37 37 H 1.09005 * 109.49312 * 307.21529 * 6 5 4 38 38 H 1.09003 * 109.62674 * 186.46683 * 7 6 5 39 39 H 1.08994 * 109.63121 * 65.87961 * 7 6 5 40 40 H 0.97008 * 119.99742 * 180.02562 * 12 11 9 41 41 H 1.09002 * 109.62669 * 68.24878 * 17 8 7 42 42 H 1.08999 * 109.63161 * 188.83410 * 17 8 7 43 43 H 1.09002 * 109.49082 * 292.70668 * 18 5 4 44 44 H 1.09005 * 109.49246 * 52.75440 * 18 5 4 45 45 H 1.08998 * 109.66956 * 307.02312 * 23 21 19 46 46 H 1.08996 * 109.67367 * 67.55079 * 23 21 19 47 47 H 1.09003 * 109.39886 * 71.23491 * 24 23 21 48 48 H 1.08998 * 109.39538 * 190.96820 * 24 23 21 49 49 H 0.96995 * 117.95406 * 177.77741 * 27 25 24 50 50 H 1.08998 * 109.18063 * 258.53596 * 28 27 25 51 51 H 1.09004 * 109.45629 * 139.14308 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3169 1.7886 -1.4340 5 7 3.1760 2.9800 -1.4529 6 6 3.1256 3.6447 -2.7620 7 6 4.1659 4.7692 -2.8006 8 7 3.9424 5.6523 -1.6458 9 6 3.8293 7.0072 -1.8085 10 1 3.6560 7.4204 -2.7911 11 6 3.9317 7.8491 -0.7097 12 7 4.6325 7.4779 0.3408 13 14 3.0750 9.5091 -0.7218 14 1 1.7514 9.3879 -0.0595 15 1 3.9052 10.5000 0.0089 16 1 2.8872 9.9589 -2.1245 17 6 3.8495 5.0420 -0.3108 18 6 2.8159 3.9061 -0.3709 19 6 2.1388 -1.1672 0.0005 20 8 1.5390 -2.2138 -0.1253 21 6 3.6376 -1.1719 0.1575 22 1 3.9225 -0.5019 0.9686 23 6 4.1176 -2.5939 0.4723 24 6 5.6104 -2.5380 0.8056 25 6 6.3391 -1.7488 -0.2439 26 8 7.5432 -1.8712 -0.3211 27 7 5.7331 -0.9203 -1.0952 28 6 4.2913 -0.7080 -1.1448 29 1 -0.3634 -0.0916 -1.0236 30 1 -0.3634 -0.8406 0.5910 31 1 -0.3634 0.9323 0.4325 32 1 3.1937 1.1131 0.4143 33 1 1.6613 1.9979 0.6073 34 1 1.3273 2.0482 -1.8100 35 1 2.7542 1.0153 -2.0656 36 1 2.1316 4.0631 -2.9193 37 1 3.3440 2.9201 -3.5465 38 1 4.0555 5.3386 -3.7235 39 1 5.1677 4.3433 -2.7473 40 1 4.7037 8.0662 1.1088 41 1 4.8216 4.6416 -0.0228 42 1 3.5300 5.7916 0.4131 43 1 1.8261 4.3209 -0.5616 44 1 2.8092 3.3709 0.5787 45 1 3.5653 -2.9870 1.3259 46 1 3.9589 -3.2351 -0.3947 47 1 5.7470 -2.0619 1.7766 48 1 6.0117 -3.5508 0.8408 49 1 6.2863 -0.4255 -1.7196 50 1 3.8745 -1.2732 -1.9784 51 1 4.0853 0.3520 -1.2935 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567719851.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:37 Heat of formation + Delta-G solvation = -49.654856 kcal Electronic energy + Delta-G solvation = -31166.637303 eV Core-core repulsion = 27101.126077 eV Total energy + Delta-G solvation = -4065.511225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.91450 -40.61145 -39.72770 -37.34218 -37.30321 -35.82055 -34.00031 -33.38022 -31.57511 -31.52473 -30.33464 -28.14806 -27.35215 -25.66825 -25.21394 -24.25496 -23.89701 -22.83286 -20.96217 -20.74671 -19.55425 -18.80846 -18.58972 -18.12713 -17.46444 -16.94783 -16.82582 -16.49232 -16.38408 -15.98237 -15.78234 -15.51504 -15.29739 -15.16664 -15.05164 -14.93309 -14.77402 -14.42455 -14.27657 -13.80161 -13.72618 -13.28880 -13.13096 -13.04044 -12.96582 -12.90994 -12.76563 -12.57350 -12.40546 -12.28630 -12.13570 -12.01578 -11.90937 -11.76135 -11.51171 -11.38145 -10.91360 -10.82419 -10.49401 -10.12783 -9.77812 -9.26299 -8.77652 -7.88032 -5.17105 1.41823 1.47070 1.50317 1.58245 1.61293 1.86111 2.30545 2.53346 2.99093 3.23448 3.35712 3.53650 3.63193 3.70561 3.71640 3.86443 3.94458 4.11943 4.22224 4.30676 4.37730 4.39722 4.40890 4.49122 4.53565 4.57692 4.62573 4.66783 4.68608 4.72470 4.79401 4.84616 4.90801 4.93616 4.95280 5.04234 5.08695 5.16420 5.23413 5.43735 5.47176 5.62516 5.76522 5.77130 6.13889 6.17474 6.29212 6.32954 6.36421 7.03666 7.14329 7.17566 7.89212 8.37203 9.18418 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.002963 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.315801 B = 9447.807359 C =10548.628199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.607 5.607 3 C 0.102 3.898 4 C 0.036 3.964 5 N -0.531 5.531 6 C 0.057 3.943 7 C 0.143 3.857 8 N -0.616 5.616 9 C -0.259 4.259 10 H 0.070 0.930 11 C -0.052 4.052 12 N -0.928 5.928 13 Si 0.955 3.045 14 H -0.287 1.287 15 H -0.299 1.299 16 H -0.272 1.272 17 C 0.170 3.830 18 C 0.046 3.954 19 C 0.528 3.472 20 O -0.565 6.565 21 C -0.124 4.124 22 H 0.121 0.879 23 C -0.095 4.095 24 C -0.128 4.128 25 C 0.513 3.487 26 O -0.609 6.609 27 N -0.708 5.708 28 C 0.112 3.888 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.037 0.963 35 H 0.089 0.911 36 H 0.024 0.976 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.019 0.981 40 H 0.250 0.750 41 H -0.002 1.002 42 H 0.070 0.930 43 H 0.020 0.980 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.072 0.928 47 H 0.119 0.881 48 H 0.113 0.887 49 H 0.405 0.595 50 H 0.075 0.925 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.108 -18.831 0.198 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.339 5.339 3 C -0.021 4.021 4 C -0.092 4.092 5 N -0.257 5.257 6 C -0.073 4.073 7 C 0.018 3.982 8 N -0.340 5.340 9 C -0.388 4.388 10 H 0.088 0.912 11 C -0.247 4.247 12 N -0.575 5.575 13 Si 0.784 3.216 14 H -0.214 1.214 15 H -0.226 1.226 16 H -0.197 1.197 17 C 0.044 3.956 18 C -0.083 4.083 19 C 0.316 3.684 20 O -0.443 6.443 21 C -0.146 4.146 22 H 0.139 0.861 23 C -0.133 4.133 24 C -0.167 4.167 25 C 0.302 3.698 26 O -0.491 6.491 27 N -0.358 5.358 28 C -0.012 4.012 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.055 0.945 35 H 0.107 0.893 36 H 0.042 0.958 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.059 0.941 41 H 0.017 0.983 42 H 0.088 0.912 43 H 0.038 0.962 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.091 0.909 47 H 0.137 0.863 48 H 0.132 0.868 49 H 0.241 0.759 50 H 0.093 0.907 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.495 -19.612 0.429 21.000 hybrid contribution -0.776 1.870 -0.380 2.060 sum -8.271 -17.742 0.049 19.575 Atomic orbital electron populations 1.21765 0.78187 1.03637 1.02358 1.47885 1.07692 1.05796 1.72513 1.21961 0.98798 0.84532 0.96847 1.22684 0.95791 0.93077 0.97663 1.62021 1.52667 1.07175 1.03790 1.22441 0.97696 0.96163 0.90967 1.21116 0.95946 0.90988 0.90182 1.44589 1.83798 1.02395 1.03209 1.19575 1.41414 0.83331 0.94515 0.91225 1.25386 1.00619 1.00936 0.97752 1.70249 1.40405 1.38721 1.08139 0.85417 0.78404 0.80129 0.77606 1.21395 1.22580 1.19695 1.21029 0.94469 0.92782 0.87349 1.22761 0.96788 0.93794 0.94936 1.20469 0.89605 0.82933 0.75381 1.90702 1.70849 1.32408 1.50387 1.21671 0.91263 1.01112 1.00539 0.86113 1.21437 0.93839 0.94208 1.03859 1.21682 0.94851 1.02160 0.98048 1.20771 0.87346 0.79238 0.82465 1.90753 1.17268 1.67709 1.73409 1.45428 1.08689 1.44088 1.37566 1.21711 0.79292 1.03731 0.96458 0.92456 0.91387 0.89178 0.88068 0.88930 0.94457 0.89252 0.95779 0.88686 0.92510 0.96289 0.94099 0.98340 0.91201 0.96173 0.88843 0.89002 0.90894 0.86346 0.86830 0.75925 0.90704 0.87482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 10.36 127.77 1.32 2.45 16 2 N -0.61 -9.26 2.87 -846.76 -2.43 -11.70 16 3 C 0.10 1.52 3.91 86.38 0.34 1.86 16 4 C 0.04 0.66 4.69 86.30 0.40 1.06 16 5 N -0.53 -13.88 4.78 -894.31 -4.27 -18.15 16 6 C 0.06 1.62 5.58 86.38 0.48 2.11 16 7 C 0.14 5.45 6.69 86.35 0.58 6.02 16 8 N -0.62 -29.28 3.06 -697.25 -2.13 -31.41 16 9 C -0.26 -13.75 9.69 84.03 0.81 -12.93 16 10 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 11 C -0.05 -2.81 4.82 84.86 0.41 -2.40 16 12 N -0.93 -52.94 10.98 21.65 0.24 -52.70 16 13 Si 0.96 43.52 29.63 68.60 2.03 45.56 16 14 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 15 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 C 0.17 7.56 5.67 86.50 0.49 8.05 16 18 C 0.05 1.46 5.07 86.54 0.44 1.89 16 19 C 0.53 9.36 6.89 87.66 0.60 9.97 16 20 O -0.56 -13.73 15.85 -3.02 -0.05 -13.78 16 21 C -0.12 -1.75 1.73 -11.45 -0.02 -1.77 16 22 H 0.12 1.44 6.91 -2.39 -0.02 1.42 16 23 C -0.10 -1.31 4.64 30.73 0.14 -1.17 16 24 C -0.13 -1.86 6.03 29.70 0.18 -1.68 16 25 C 0.51 11.25 7.71 87.71 0.68 11.93 16 26 O -0.61 -19.20 17.78 -3.04 -0.05 -19.25 16 27 N -0.71 -12.85 5.45 -467.18 -2.55 -15.40 16 28 C 0.11 1.62 5.74 86.48 0.50 2.12 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 1.02 7.69 -2.39 -0.02 1.00 16 31 H 0.09 0.93 7.90 -2.38 -0.02 0.91 16 32 H 0.10 1.45 5.36 -2.38 -0.01 1.43 16 33 H 0.09 1.36 6.42 -2.39 -0.02 1.35 16 34 H 0.04 0.70 8.08 -2.39 -0.02 0.68 16 35 H 0.09 1.41 6.00 -2.38 -0.01 1.40 16 36 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.09 2.13 8.11 -2.38 -0.02 2.12 16 38 H 0.06 2.10 7.90 -2.39 -0.02 2.09 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.25 13.82 8.31 -92.70 -0.77 13.05 16 41 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 42 H 0.07 3.59 5.54 -2.39 -0.01 3.58 16 43 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.09 2.38 5.87 -2.38 -0.01 2.37 16 45 H 0.09 1.17 8.11 -2.39 -0.02 1.15 16 46 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 47 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.40 7.46 8.80 -92.71 -0.82 6.65 16 50 H 0.07 1.05 8.11 -2.39 -0.02 1.03 16 51 H 0.11 1.56 4.03 -2.38 -0.01 1.55 16 Total: -1.00 -71.97 387.09 -1.73 -73.70 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.13 Total: 15.63 kcal Atomic # 6 Polarization: 20.15 SS G_CDS: 7.36 Total: 27.51 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -11.15 Total: -129.36 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.10 Total: -33.03 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.56 kcal Total: -71.97 -1.73 -73.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567719851.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.045 kcal (2) G-P(sol) polarization free energy of solvation -71.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds