Wall clock time and date at job start Tue Mar 31 2020 21:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48497 * 109.46725 * 240.00034 * 3 2 1 5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46920 * 120.00247 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47196 * 64.99810 * 11 10 9 13 13 N 1.46503 * 109.47269 * 304.99931 * 11 10 9 14 14 C 1.34773 * 120.00358 * 154.99590 * 13 11 10 15 15 O 1.21287 * 119.99899 * 0.02562 * 14 13 11 16 16 C 1.50701 * 120.00419 * 179.97438 * 14 13 11 17 17 C 1.52994 * 109.47242 * 180.02562 * 16 14 13 18 18 C 1.53177 * 109.54438 * 294.55532 * 17 16 14 19 19 C 1.53094 * 109.16313 * 183.15392 * 18 17 16 20 20 O 1.42896 * 109.41712 * 57.61005 * 19 18 17 21 21 C 1.42907 * 114.09733 * 298.84427 * 20 19 18 22 22 C 1.53084 * 109.41509 * 61.15776 * 21 20 19 23 23 C 1.52997 * 109.47504 * 184.99959 * 11 10 9 24 24 C 1.53000 * 109.46704 * 300.00016 * 23 11 10 25 25 C 1.53005 * 109.47029 * 179.97438 * 24 23 11 26 26 C 1.53001 * 109.46939 * 59.99699 * 25 24 23 27 27 C 1.52991 * 109.47684 * 300.00395 * 26 25 24 28 28 C 1.52997 * 109.47504 * 179.97438 * 23 11 10 29 29 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 32 32 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 33 33 H 0.97007 * 119.99919 * 335.00159 * 13 11 10 34 34 H 1.08998 * 109.47026 * 300.00705 * 16 14 13 35 35 H 1.09006 * 109.46624 * 60.00166 * 16 14 13 36 36 H 1.08998 * 109.54360 * 54.82742 * 17 16 14 37 37 H 1.08996 * 109.52804 * 303.06051 * 18 17 16 38 38 H 1.08999 * 109.52166 * 63.25351 * 18 17 16 39 39 H 1.09006 * 109.47873 * 297.62551 * 19 18 17 40 40 H 1.08999 * 109.47906 * 177.59815 * 19 18 17 41 41 H 1.09002 * 109.48132 * 301.17081 * 21 20 19 42 42 H 1.09004 * 109.48717 * 181.14430 * 21 20 19 43 43 H 1.09004 * 109.52397 * 182.48596 * 22 21 20 44 44 H 1.08995 * 109.52967 * 62.29769 * 22 21 20 45 45 H 1.09002 * 109.47016 * 59.99741 * 23 11 10 46 46 H 1.08993 * 109.47376 * 299.99617 * 24 23 11 47 47 H 1.08992 * 109.47261 * 60.00195 * 24 23 11 48 48 H 1.09002 * 109.47110 * 299.99981 * 25 24 23 49 49 H 1.08994 * 109.47689 * 180.02562 * 25 24 23 50 50 H 1.09003 * 109.47255 * 179.97438 * 26 25 24 51 51 H 1.09006 * 109.46733 * 60.00638 * 26 25 24 52 52 H 1.09006 * 109.47233 * 299.99936 * 27 26 25 53 53 H 1.09004 * 109.47763 * 179.97438 * 27 26 25 54 54 H 1.09004 * 109.47346 * 300.00076 * 28 23 11 55 55 H 1.09002 * 109.47196 * 59.99850 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.4981 -4.8134 -0.9338 13 7 0.1441 -4.6764 1.1289 14 6 -1.0803 -5.2372 1.0770 15 8 -1.4205 -5.8609 0.0940 16 6 -2.0265 -5.0903 2.2407 17 6 -3.3367 -5.8154 1.9275 18 6 -4.0397 -5.1208 0.7571 19 6 -5.3857 -5.8042 0.5022 20 8 -6.1751 -5.7576 1.6924 21 6 -5.5893 -6.4321 2.8078 22 6 -4.2516 -5.7739 3.1554 23 6 1.8248 -6.1411 0.1235 24 6 2.7855 -6.2908 -1.0579 25 6 3.5468 -7.6120 -0.9319 26 6 2.5530 -8.7752 -0.9321 27 6 1.5922 -8.6256 0.2491 28 6 0.8306 -7.3040 0.1235 29 1 -0.4851 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0016 31 1 2.6855 -3.7140 -0.8911 32 1 2.6842 -3.7148 0.8888 33 1 0.4162 -4.1777 1.9152 34 1 -1.5754 -5.5248 3.1328 35 1 -2.2281 -4.0331 2.4137 36 1 -3.1260 -6.8520 1.6647 37 1 -4.2045 -4.0715 1.0020 38 1 -3.4191 -5.1942 -0.1359 39 1 -5.2178 -6.8430 0.2178 40 1 -5.9093 -5.2871 -0.3018 41 1 -5.4242 -7.4791 2.5537 42 1 -6.2598 -6.3675 3.6649 43 1 -3.7824 -6.3143 3.9776 44 1 -4.4206 -4.7379 3.4488 45 1 2.3907 -6.1474 1.0551 46 1 2.2197 -6.2845 -1.9894 47 1 3.4938 -5.4623 -1.0574 48 1 4.1127 -7.6178 -0.0003 49 1 4.2316 -7.7185 -1.7732 50 1 3.0953 -9.7165 -0.8428 51 1 1.9871 -8.7694 -1.8638 52 1 2.1581 -8.6314 1.1807 53 1 0.8839 -9.4541 0.2486 54 1 0.1464 -7.1972 0.9653 55 1 0.2644 -7.2980 -0.8079 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568342143.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:49 Heat of formation + Delta-G solvation = -131.025899 kcal Electronic energy + Delta-G solvation = -31415.226389 eV Core-core repulsion = 27449.726994 eV Total energy + Delta-G solvation = -3965.499395 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.43929 -40.23988 -39.08985 -37.20743 -35.59226 -35.20237 -33.16240 -32.15921 -31.96732 -31.54385 -29.90569 -28.40507 -25.70214 -24.63079 -24.41263 -23.70382 -22.96850 -21.80718 -21.25568 -20.88324 -20.55549 -19.21115 -17.88143 -17.27631 -17.08215 -16.86390 -16.83923 -16.52384 -15.99794 -15.59711 -15.43250 -15.27310 -15.19718 -14.94743 -14.82045 -14.74534 -14.50363 -14.03691 -13.80872 -13.58657 -13.25925 -13.15477 -13.05165 -12.93029 -12.83982 -12.76441 -12.54187 -12.41762 -12.23331 -12.11174 -11.97519 -11.91023 -11.83875 -11.77971 -11.53565 -11.36940 -11.19279 -11.11778 -10.96894 -10.79379 -10.64467 -10.34254 -9.76935 -9.00532 -7.94439 -5.23845 1.47671 1.50026 1.56169 1.80539 2.34944 2.55889 2.99497 3.39682 3.60722 3.71464 3.74508 3.83353 3.86300 3.91147 4.07835 4.11807 4.17991 4.22971 4.30191 4.30932 4.47212 4.48211 4.51612 4.55076 4.59978 4.62174 4.66609 4.69348 4.73574 4.74566 4.79922 4.81714 4.88631 4.92611 4.95284 5.02072 5.03974 5.16843 5.18355 5.21387 5.27292 5.31476 5.33927 5.36846 5.43127 5.45521 5.48151 5.51665 5.63719 5.73357 6.26025 6.28963 6.70846 7.33649 7.41696 8.07522 8.31601 9.28207 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006603 B = 0.004197 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4239.609744 B = 6670.012263 C =10354.591601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.971 3.029 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.246 4.246 8 H 0.077 0.923 9 N -0.742 5.742 10 C 0.147 3.853 11 C 0.155 3.845 12 H 0.053 0.947 13 N -0.712 5.712 14 C 0.510 3.490 15 O -0.566 6.566 16 C -0.132 4.132 17 C -0.064 4.064 18 C -0.154 4.154 19 C 0.066 3.934 20 O -0.405 6.405 21 C 0.055 3.945 22 C -0.146 4.146 23 C -0.080 4.080 24 C -0.115 4.115 25 C -0.112 4.112 26 C -0.117 4.117 27 C -0.115 4.115 28 C -0.093 4.093 29 H 0.250 0.750 30 H 0.374 0.626 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.406 0.594 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.093 0.907 41 H 0.058 0.942 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.049 0.951 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.074 0.926 51 H 0.052 0.948 52 H 0.066 0.934 53 H 0.060 0.940 54 H 0.049 0.951 55 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.789 -19.612 6.759 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.263 4.263 3 Si 0.800 3.200 4 H -0.207 1.207 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.377 4.377 8 H 0.095 0.905 9 N -0.385 5.385 10 C 0.020 3.980 11 C 0.050 3.950 12 H 0.071 0.929 13 N -0.362 5.362 14 C 0.299 3.701 15 O -0.446 6.446 16 C -0.172 4.172 17 C -0.083 4.083 18 C -0.192 4.192 19 C -0.010 4.010 20 O -0.325 6.325 21 C -0.021 4.021 22 C -0.184 4.184 23 C -0.100 4.100 24 C -0.153 4.153 25 C -0.149 4.149 26 C -0.155 4.155 27 C -0.153 4.153 28 C -0.131 4.131 29 H 0.059 0.941 30 H 0.206 0.794 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.241 0.759 34 H 0.137 0.863 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.076 0.924 42 H 0.128 0.872 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.092 0.908 51 H 0.070 0.930 52 H 0.085 0.915 53 H 0.079 0.921 54 H 0.068 0.932 55 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.042 -19.851 6.067 20.857 hybrid contribution 0.313 1.622 -0.110 1.655 sum -1.728 -18.229 5.956 19.255 Atomic orbital electron populations 1.69815 1.06600 1.26022 1.59327 1.25510 0.96262 1.00934 1.03603 0.85255 0.77199 0.79352 0.78193 1.20697 1.22445 1.20101 1.19580 0.91515 0.85208 1.41428 0.90501 1.42507 1.05613 1.00892 1.89454 1.21122 0.93590 0.84243 0.99007 1.21032 0.90052 0.94581 0.89361 0.92901 1.45993 1.15022 1.54850 1.20335 1.21015 0.82050 0.77773 0.89303 1.90631 1.76275 1.42679 1.35026 1.21760 0.94787 1.03500 0.97141 1.20848 0.92883 0.99459 0.95094 1.22282 0.97257 0.99495 1.00165 1.22545 0.91203 1.00053 0.87247 1.87885 1.46524 1.77377 1.20692 1.22764 0.94786 0.95354 0.89193 1.22249 0.95910 1.02559 0.97689 1.21419 0.96174 0.92785 0.99648 1.21600 0.97887 0.98593 0.97242 1.21490 0.97534 0.93469 1.02447 1.21529 0.97251 0.98582 0.98108 1.21550 0.98193 0.96632 0.98919 1.21461 0.96557 0.93991 1.01046 0.94140 0.79393 0.94704 0.94720 0.75892 0.86285 0.89068 0.90837 0.92935 0.91242 0.92662 0.88896 0.92416 0.87222 0.88417 0.91414 0.90348 0.93184 0.91661 0.91291 0.91202 0.90757 0.92965 0.91529 0.92118 0.93182 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.59 13.06 21.65 0.28 -58.30 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 3 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.25 -13.35 9.99 84.03 0.84 -12.51 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.74 -36.46 5.43 -343.45 -1.87 -38.33 16 10 C 0.15 5.57 5.31 86.38 0.46 6.03 16 11 C 0.16 5.09 2.00 44.99 0.09 5.18 16 12 H 0.05 2.09 7.58 -2.39 -0.02 2.07 16 13 N -0.71 -21.68 4.41 -442.53 -1.95 -23.62 16 14 C 0.51 15.34 5.92 87.66 0.52 15.86 16 15 O -0.57 -19.88 11.13 -3.05 -0.03 -19.91 16 16 C -0.13 -3.05 5.18 29.85 0.15 -2.90 16 17 C -0.06 -1.44 1.92 -10.67 -0.02 -1.46 16 18 C -0.15 -4.22 5.13 30.68 0.16 -4.06 16 19 C 0.07 1.60 6.84 72.01 0.49 2.09 16 20 O -0.41 -10.01 10.77 -148.98 -1.60 -11.62 16 21 C 0.06 0.99 6.84 72.01 0.49 1.48 16 22 C -0.15 -2.58 5.42 30.68 0.17 -2.42 16 23 C -0.08 -2.10 1.96 -10.80 -0.02 -2.12 16 24 C -0.12 -2.81 4.85 30.60 0.15 -2.66 16 25 C -0.11 -2.15 5.92 30.60 0.18 -1.96 16 26 C -0.12 -2.19 5.92 30.59 0.18 -2.01 16 27 C -0.12 -2.35 5.92 30.61 0.18 -2.16 16 28 C -0.09 -2.41 3.73 30.61 0.11 -2.30 16 29 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 30 H 0.37 19.99 7.33 -92.71 -0.68 19.31 16 31 H 0.04 1.34 6.71 -2.39 -0.02 1.32 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.41 11.77 8.60 -92.70 -0.80 10.97 16 34 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 36 H 0.07 1.73 7.95 -2.39 -0.02 1.71 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.07 2.27 6.07 -2.39 -0.01 2.25 16 39 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 42 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.06 1.63 6.54 -2.39 -0.02 1.62 16 48 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 51 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 52 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 53 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 54 H 0.05 1.38 5.78 -2.39 -0.01 1.36 16 55 H 0.04 1.35 7.53 -2.39 -0.02 1.33 16 Total: -1.00 -66.34 410.82 0.84 -65.50 By element: Atomic # 1 Polarization: 48.84 SS G_CDS: -0.61 Total: 48.23 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 4.60 Total: -9.43 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -3.53 Total: -120.25 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -1.64 Total: -31.53 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -66.34 0.84 -65.50 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568342143.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.529 kcal (2) G-P(sol) polarization free energy of solvation -66.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds