Wall clock time and date at job start Tue Mar 31 2020 21:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47405 * 119.99868 * 2 1 3 5 5 C 1.52995 * 109.47310 * 184.99992 * 4 2 1 6 6 N 1.46500 * 109.47071 * 180.02562 * 5 4 2 7 7 C 1.36939 * 120.00138 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99702 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00104 * 179.97438 * 7 6 5 10 10 N 1.31611 * 120.00192 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99935 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47374 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47331 * 120.00160 * 11 9 7 14 14 H 1.48506 * 109.47077 * 239.99845 * 11 9 7 15 15 N 1.46496 * 109.47084 * 239.99963 * 2 1 3 16 16 C 1.34777 * 120.00271 * 84.99619 * 15 2 1 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 2 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 2 19 19 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 20 20 C 1.53002 * 109.46966 * 300.00385 * 18 16 15 21 21 N 1.46505 * 109.47064 * 180.02562 * 18 16 15 22 22 N 1.29020 * 126.43760 * 60.02584 * 21 18 16 23 23 N 1.28730 * 108.80898 * 179.97438 * 22 21 18 24 24 N 1.28835 * 109.39969 * 359.97438 * 23 22 21 25 25 C 1.31071 * 107.98914 * 359.75230 * 24 23 22 26 26 C 1.50704 * 126.66181 * 180.23813 * 25 24 23 27 27 C 1.53001 * 109.47380 * 240.17518 * 26 25 24 28 28 C 1.52995 * 109.47024 * 0.17905 * 26 25 24 29 29 C 1.52999 * 109.46916 * 120.17473 * 26 25 24 30 30 H 1.09000 * 109.47057 * 300.00097 * 1 2 3 31 31 H 1.09002 * 109.47281 * 59.99892 * 1 2 3 32 32 H 1.08999 * 109.47646 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46658 * 305.00004 * 4 2 1 34 34 H 1.08998 * 109.46554 * 64.99605 * 4 2 1 35 35 H 1.09001 * 109.47269 * 299.99637 * 5 4 2 36 36 H 1.08990 * 109.47497 * 59.99628 * 5 4 2 37 37 H 0.96999 * 120.00020 * 359.97438 * 6 5 4 38 38 H 0.97006 * 120.00156 * 179.97438 * 10 9 7 39 39 H 0.97005 * 120.00266 * 265.00202 * 15 2 1 40 40 H 1.09002 * 109.47075 * 299.99352 * 20 18 16 41 41 H 1.08996 * 109.47407 * 60.00310 * 20 18 16 42 42 H 1.09000 * 109.46986 * 180.02562 * 20 18 16 43 43 H 1.09004 * 109.47026 * 59.99827 * 27 26 25 44 44 H 1.08999 * 109.47028 * 180.02562 * 27 26 25 45 45 H 1.08997 * 109.46949 * 300.00447 * 27 26 25 46 46 H 1.08997 * 109.47173 * 59.99844 * 28 26 25 47 47 H 1.08999 * 109.47067 * 179.97438 * 28 26 25 48 48 H 1.09001 * 109.46987 * 299.99325 * 28 26 25 49 49 H 1.09010 * 109.47178 * 59.99959 * 29 26 25 50 50 H 1.08999 * 109.47221 * 179.97438 * 29 26 25 51 51 H 1.08997 * 109.47425 * 300.00244 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 7 4.0532 -1.3043 2.5095 7 6 5.3952 -1.3404 2.7794 8 1 6.0937 -0.8596 2.1105 9 6 5.8579 -1.9947 3.9128 10 7 5.0068 -2.5801 4.7282 11 14 7.6887 -2.0444 4.2806 12 1 8.4273 -1.3175 3.2169 13 1 7.9477 -1.3995 5.5929 14 1 8.1467 -3.4564 4.3240 15 7 2.0183 -0.6906 -1.1961 16 6 2.1469 -0.0183 -2.3572 17 8 1.8589 1.1585 -2.4115 18 6 2.6487 -0.7289 -3.5878 19 1 1.9758 -1.5507 -3.8326 20 6 4.0512 -1.2799 -3.3222 21 7 2.6986 0.2126 -4.7091 22 7 3.3925 1.2988 -4.7674 23 7 3.1839 1.8639 -5.9051 24 7 2.3575 1.1525 -6.5912 25 6 2.0345 0.1036 -5.8747 26 6 1.0981 -1.0068 -6.2763 27 6 -0.0684 -1.0726 -5.2884 28 6 0.5606 -0.7369 -7.6830 29 6 1.8515 -2.3384 -6.2651 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6054 -0.2616 2.1369 34 1 1.7516 -1.7714 1.2056 35 1 3.9994 -1.0728 0.4260 36 1 3.8532 0.4369 1.3572 37 1 3.4259 -1.7358 3.1105 38 1 5.3302 -3.0378 5.5201 39 1 2.2490 -1.6318 -1.1526 40 1 4.7241 -0.4581 -3.0775 41 1 4.0144 -1.9804 -2.4879 42 1 4.4143 -1.7935 -4.2125 43 1 -0.6052 -0.1239 -5.2964 44 1 -0.7454 -1.8760 -5.5787 45 1 0.3146 -1.2649 -4.2863 46 1 1.3916 -0.6901 -8.3867 47 1 -0.1164 -1.5402 -7.9737 48 1 0.0237 0.2117 -7.6910 49 1 2.2346 -2.5308 -5.2628 50 1 1.1742 -3.1416 -6.5551 51 1 2.6826 -2.2916 -6.9688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568638656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:54 Heat of formation + Delta-G solvation = 78.181645 kcal Electronic energy + Delta-G solvation = -30666.690748 eV Core-core repulsion = 26639.015680 eV Total energy + Delta-G solvation = -4027.675067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -44.39598 -40.37130 -37.94026 -36.97303 -35.90156 -34.52432 -32.82202 -31.82225 -31.34272 -30.38351 -28.03288 -27.99232 -27.96731 -25.87947 -24.32455 -24.07641 -23.53319 -21.83097 -21.07825 -20.67644 -20.34217 -18.21441 -17.54649 -17.13891 -16.75143 -16.32902 -16.14429 -15.31453 -14.96934 -14.69497 -14.64076 -14.30719 -13.97313 -13.81056 -13.48601 -13.44401 -13.19794 -13.10098 -13.02532 -12.95079 -12.81716 -12.60582 -12.50043 -12.29156 -12.22832 -12.03083 -11.96155 -11.68569 -11.44692 -11.33294 -11.21589 -11.12635 -11.09809 -10.90175 -10.75919 -10.67013 -10.26508 -10.08522 -9.97601 -9.78454 -9.30199 -8.94742 -7.00623 -5.84026 -3.13204 1.07430 1.56628 2.14684 2.15549 2.77198 3.38456 3.42559 3.45014 3.46750 3.76504 3.93777 4.08945 4.13109 4.24933 4.45166 4.50225 4.67149 4.79888 4.88236 4.93641 5.04756 5.06801 5.11113 5.12368 5.19168 5.19641 5.25329 5.35762 5.39180 5.46337 5.47917 5.55910 5.58009 5.59801 5.63197 5.65317 5.78248 5.84692 5.85804 5.93964 6.09229 6.12926 6.21351 6.27746 6.68609 6.74279 7.15009 7.64122 7.82223 8.34833 8.52822 9.46323 10.02825 10.37254 11.38790 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.016093 B = 0.002487 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.422745 B =11253.686918 C =11828.868158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.092 0.908 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.070 0.930 9 C -0.013 4.013 10 N -0.933 5.933 11 Si 0.906 3.094 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.708 5.708 16 C 0.507 3.493 17 O -0.512 6.512 18 C 0.116 3.884 19 H 0.144 0.856 20 C -0.165 4.165 21 N -0.287 5.287 22 N -0.063 5.063 23 N -0.082 5.082 24 N -0.301 5.301 25 C 0.191 3.809 26 C 0.014 3.986 27 C -0.151 4.151 28 C -0.131 4.131 29 C -0.152 4.152 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.017 0.983 36 H 0.019 0.981 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.404 0.596 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.058 0.942 50 H 0.081 0.919 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.158 -3.547 -22.192 26.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.110 0.890 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.088 0.912 9 C -0.209 4.209 10 N -0.582 5.582 11 Si 0.737 3.263 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.361 5.361 16 C 0.289 3.711 17 O -0.386 6.386 18 C 0.010 3.990 19 H 0.161 0.839 20 C -0.223 4.223 21 N -0.089 5.089 22 N -0.048 5.048 23 N -0.075 5.075 24 N -0.149 5.149 25 C -0.087 4.087 26 C 0.010 3.990 27 C -0.209 4.209 28 C -0.189 4.189 29 C -0.210 4.210 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.035 0.965 36 H 0.036 0.964 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.239 0.761 40 H 0.106 0.894 41 H 0.118 0.882 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.077 0.923 50 H 0.100 0.900 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.477 -1.371 -22.470 25.738 hybrid contribution 0.579 -1.431 0.977 1.827 sum -11.898 -2.802 -21.493 24.726 Atomic orbital electron populations 1.22165 0.95122 1.02152 1.02530 1.21081 0.93709 0.97865 0.83162 0.89038 1.22080 0.98217 1.00815 0.96208 1.20630 0.90179 0.95759 0.90806 1.42364 1.05428 1.64900 1.25105 1.19261 0.83777 1.28514 1.05593 0.91175 1.24743 0.97763 1.00837 0.97604 1.69662 1.32749 1.40658 1.15115 0.86128 0.85005 0.77237 0.77896 1.20511 1.21781 1.21820 1.46006 1.66649 1.14279 1.09130 1.20022 0.78943 0.87671 0.84415 1.90825 1.48536 1.14911 1.84322 1.21981 1.02980 0.90111 0.83965 0.83922 1.22227 0.92302 1.03327 1.04480 1.48029 1.30083 1.17238 1.13532 1.78974 1.14414 0.94942 1.16503 1.78644 1.11350 1.20471 0.97043 1.74958 1.12082 1.02342 1.25500 1.26001 0.99117 0.99309 0.84261 1.19254 0.91901 0.89395 0.98440 1.22087 0.97197 1.03897 0.97688 1.21744 1.01706 1.02684 0.92774 1.22118 1.01160 0.95100 1.02643 0.91179 0.92526 0.92307 0.89945 0.91180 0.96486 0.96353 0.78306 0.93515 0.76119 0.89419 0.88244 0.90145 0.91352 0.90015 0.92673 0.91334 0.91200 0.91360 0.92289 0.90011 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 2 C 0.15 1.71 2.57 -67.93 -0.17 1.54 16 3 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 4 C -0.13 -1.84 4.87 -26.73 -0.13 -1.97 16 5 C 0.15 2.84 6.15 -4.04 -0.02 2.81 16 6 N -0.73 -17.69 5.60 -59.91 -0.34 -18.02 16 7 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 C -0.01 -0.38 5.50 -17.44 -0.10 -0.48 16 10 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 11 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 N -0.71 -7.07 4.42 -53.81 -0.24 -7.31 16 16 C 0.51 5.90 7.15 -10.98 -0.08 5.82 16 17 O -0.51 -8.29 15.55 5.56 0.09 -8.20 16 18 C 0.12 1.02 2.25 -69.08 -0.16 0.87 16 19 H 0.14 0.76 3.74 -51.93 -0.19 0.56 16 20 C -0.17 -1.26 9.30 37.16 0.35 -0.92 16 21 N -0.29 -3.41 2.76 -52.92 -0.15 -3.56 16 22 N -0.06 -0.98 12.42 60.35 0.75 -0.23 16 23 N -0.08 -1.33 13.43 60.35 0.81 -0.52 16 24 N -0.30 -4.24 11.71 32.70 0.38 -3.86 16 25 C 0.19 2.11 6.40 -155.44 -1.00 1.11 16 26 C 0.01 0.09 0.75 -155.66 -0.12 -0.03 16 27 C -0.15 -0.86 8.31 37.16 0.31 -0.55 16 28 C -0.13 -0.79 8.00 37.15 0.30 -0.49 16 29 C -0.15 -0.67 8.31 37.16 0.31 -0.36 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.02 0.31 7.75 -51.93 -0.40 -0.10 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.38 9.66 7.67 -40.82 -0.31 9.35 16 38 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.40 3.05 8.02 -40.82 -0.33 2.72 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 0.58 7.56 -51.93 -0.39 0.18 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.05 0.31 5.57 -51.93 -0.29 0.02 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.21 5.59 -51.92 -0.29 -0.08 16 50 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 51 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 410.60 15.07 6.19 6.19 Total: -1.00 -36.23 410.60 -5.60 -41.83 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -8.49 Total: 4.11 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -0.31 Total: -0.61 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 1.95 Total: -60.31 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.09 Total: -8.20 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.23 -5.60 -41.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568638656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.010 kcal (2) G-P(sol) polarization free energy of solvation -36.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds