Wall clock time and date at job start Tue Mar 31 2020 21:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47405 * 119.99868 * 2 1 3 5 5 C 1.52995 * 109.47310 * 184.99992 * 4 2 1 6 6 N 1.46500 * 109.47071 * 180.02562 * 5 4 2 7 7 C 1.36939 * 120.00138 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99702 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00104 * 179.97438 * 7 6 5 10 10 N 1.31611 * 120.00192 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99935 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47374 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47331 * 120.00160 * 11 9 7 14 14 H 1.48506 * 109.47077 * 239.99845 * 11 9 7 15 15 N 1.46496 * 109.47084 * 239.99963 * 2 1 3 16 16 C 1.34777 * 120.00271 * 84.99619 * 15 2 1 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 2 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 2 19 19 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 20 20 C 1.53002 * 109.46966 * 300.00385 * 18 16 15 21 21 N 1.46505 * 109.47064 * 180.02562 * 18 16 15 22 22 N 1.29020 * 126.43760 * 60.02584 * 21 18 16 23 23 N 1.28730 * 108.80898 * 179.97438 * 22 21 18 24 24 N 1.28835 * 109.39969 * 359.97438 * 23 22 21 25 25 C 1.31071 * 107.98914 * 359.75230 * 24 23 22 26 26 C 1.50704 * 126.66181 * 180.23813 * 25 24 23 27 27 C 1.53001 * 109.47380 * 240.17518 * 26 25 24 28 28 C 1.52995 * 109.47024 * 0.17905 * 26 25 24 29 29 C 1.52999 * 109.46916 * 120.17473 * 26 25 24 30 30 H 1.09000 * 109.47057 * 300.00097 * 1 2 3 31 31 H 1.09002 * 109.47281 * 59.99892 * 1 2 3 32 32 H 1.08999 * 109.47646 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46658 * 305.00004 * 4 2 1 34 34 H 1.08998 * 109.46554 * 64.99605 * 4 2 1 35 35 H 1.09001 * 109.47269 * 299.99637 * 5 4 2 36 36 H 1.08990 * 109.47497 * 59.99628 * 5 4 2 37 37 H 0.96999 * 120.00020 * 359.97438 * 6 5 4 38 38 H 0.97006 * 120.00156 * 179.97438 * 10 9 7 39 39 H 0.97005 * 120.00266 * 265.00202 * 15 2 1 40 40 H 1.09002 * 109.47075 * 299.99352 * 20 18 16 41 41 H 1.08996 * 109.47407 * 60.00310 * 20 18 16 42 42 H 1.09000 * 109.46986 * 180.02562 * 20 18 16 43 43 H 1.09004 * 109.47026 * 59.99827 * 27 26 25 44 44 H 1.08999 * 109.47028 * 180.02562 * 27 26 25 45 45 H 1.08997 * 109.46949 * 300.00447 * 27 26 25 46 46 H 1.08997 * 109.47173 * 59.99844 * 28 26 25 47 47 H 1.08999 * 109.47067 * 179.97438 * 28 26 25 48 48 H 1.09001 * 109.46987 * 299.99325 * 28 26 25 49 49 H 1.09010 * 109.47178 * 59.99959 * 29 26 25 50 50 H 1.08999 * 109.47221 * 179.97438 * 29 26 25 51 51 H 1.08997 * 109.47425 * 300.00244 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 7 4.0532 -1.3043 2.5095 7 6 5.3952 -1.3404 2.7794 8 1 6.0937 -0.8596 2.1105 9 6 5.8579 -1.9947 3.9128 10 7 5.0068 -2.5801 4.7282 11 14 7.6887 -2.0444 4.2806 12 1 8.4273 -1.3175 3.2169 13 1 7.9477 -1.3995 5.5929 14 1 8.1467 -3.4564 4.3240 15 7 2.0183 -0.6906 -1.1961 16 6 2.1469 -0.0183 -2.3572 17 8 1.8589 1.1585 -2.4115 18 6 2.6487 -0.7289 -3.5878 19 1 1.9758 -1.5507 -3.8326 20 6 4.0512 -1.2799 -3.3222 21 7 2.6986 0.2126 -4.7091 22 7 3.3925 1.2988 -4.7674 23 7 3.1839 1.8639 -5.9051 24 7 2.3575 1.1525 -6.5912 25 6 2.0345 0.1036 -5.8747 26 6 1.0981 -1.0068 -6.2763 27 6 -0.0684 -1.0726 -5.2884 28 6 0.5606 -0.7369 -7.6830 29 6 1.8515 -2.3384 -6.2651 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6054 -0.2616 2.1369 34 1 1.7516 -1.7714 1.2056 35 1 3.9994 -1.0728 0.4260 36 1 3.8532 0.4369 1.3572 37 1 3.4259 -1.7358 3.1105 38 1 5.3302 -3.0378 5.5201 39 1 2.2490 -1.6318 -1.1526 40 1 4.7241 -0.4581 -3.0775 41 1 4.0144 -1.9804 -2.4879 42 1 4.4143 -1.7935 -4.2125 43 1 -0.6052 -0.1239 -5.2964 44 1 -0.7454 -1.8760 -5.5787 45 1 0.3146 -1.2649 -4.2863 46 1 1.3916 -0.6901 -8.3867 47 1 -0.1164 -1.5402 -7.9737 48 1 0.0237 0.2117 -7.6910 49 1 2.2346 -2.5308 -5.2628 50 1 1.1742 -3.1416 -6.5551 51 1 2.6826 -2.2916 -6.9688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568638656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:53 Heat of formation + Delta-G solvation = 51.887494 kcal Electronic energy + Delta-G solvation = -30667.830948 eV Core-core repulsion = 26639.015680 eV Total energy + Delta-G solvation = -4028.815267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.37063 -41.33476 -38.58110 -38.05195 -36.87054 -36.16261 -33.98061 -33.15873 -32.51641 -31.44944 -29.42089 -28.50911 -28.32354 -26.64897 -25.91274 -24.98041 -24.68115 -23.24371 -22.18968 -21.62478 -21.03750 -19.39288 -18.87019 -18.40098 -17.71774 -17.28749 -16.78725 -16.67669 -16.23017 -15.67401 -15.50404 -15.26930 -15.16501 -15.05344 -14.87340 -14.37507 -14.33864 -14.04079 -13.82060 -13.60772 -13.56510 -13.27121 -13.12781 -13.05669 -12.94718 -12.91832 -12.91774 -12.72641 -12.70283 -12.40839 -12.29539 -12.24695 -12.17781 -12.03856 -11.99439 -11.95153 -11.78630 -11.66293 -11.21643 -10.97311 -10.91346 -10.26437 -9.00525 -7.96893 -5.25111 0.13754 0.75148 1.12063 1.24742 1.46689 1.48244 1.57379 1.89672 2.54596 2.75704 3.01853 3.31998 3.35347 3.37414 3.44070 3.62007 3.79521 3.93821 4.02201 4.03644 4.14428 4.24292 4.36741 4.41038 4.41980 4.55006 4.55737 4.61964 4.62254 4.70389 4.77379 4.78838 4.81040 4.87028 4.92625 4.93835 4.97172 4.98354 5.06744 5.16584 5.23039 5.26193 5.29313 5.32659 5.38457 5.45048 5.49237 6.26115 6.30309 6.96921 7.33392 7.49819 8.08694 8.32113 9.26427 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.016093 B = 0.002487 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.422745 B =11253.686918 C =11828.868158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.154 3.846 3 H 0.063 0.937 4 C -0.118 4.118 5 C 0.152 3.848 6 N -0.744 5.744 7 C -0.244 4.244 8 H 0.070 0.930 9 C -0.071 4.071 10 N -0.966 5.966 11 Si 0.968 3.032 12 H -0.270 1.270 13 H -0.295 1.295 14 H -0.289 1.289 15 N -0.695 5.695 16 C 0.507 3.493 17 O -0.563 6.563 18 C 0.117 3.883 19 H 0.186 0.814 20 C -0.165 4.165 21 N -0.285 5.285 22 N -0.094 5.094 23 N -0.115 5.115 24 N -0.328 5.328 25 C 0.203 3.797 26 C 0.012 3.988 27 C -0.150 4.150 28 C -0.131 4.131 29 C -0.152 4.152 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.031 0.969 36 H 0.000 1.000 37 H 0.376 0.624 38 H 0.252 0.748 39 H 0.419 0.581 40 H 0.057 0.943 41 H 0.124 0.876 42 H 0.100 0.900 43 H 0.046 0.954 44 H 0.115 0.885 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.101 0.899 48 H 0.049 0.951 49 H 0.069 0.931 50 H 0.111 0.889 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.149 -6.457 -23.036 27.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.049 3.951 3 H 0.081 0.919 4 C -0.156 4.156 5 C 0.026 3.974 6 N -0.387 5.387 7 C -0.376 4.376 8 H 0.088 0.912 9 C -0.264 4.264 10 N -0.616 5.616 11 Si 0.797 3.203 12 H -0.194 1.194 13 H -0.223 1.223 14 H -0.216 1.216 15 N -0.348 5.348 16 C 0.291 3.709 17 O -0.441 6.441 18 C 0.012 3.988 19 H 0.203 0.797 20 C -0.223 4.223 21 N -0.087 5.087 22 N -0.080 5.080 23 N -0.108 5.108 24 N -0.176 5.176 25 C -0.075 4.075 26 C 0.009 3.991 27 C -0.208 4.208 28 C -0.188 4.188 29 C -0.209 4.209 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.018 0.982 37 H 0.209 0.791 38 H 0.061 0.939 39 H 0.258 0.742 40 H 0.077 0.923 41 H 0.142 0.858 42 H 0.119 0.881 43 H 0.066 0.934 44 H 0.133 0.867 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.120 0.880 48 H 0.068 0.932 49 H 0.088 0.912 50 H 0.130 0.870 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.464 -4.299 -23.336 27.282 hybrid contribution 0.832 -0.514 1.205 1.552 sum -12.631 -4.813 -22.131 25.932 Atomic orbital electron populations 1.22082 0.93164 1.03538 1.02323 1.20864 0.95073 0.96248 0.82940 0.91858 1.21904 0.94494 1.02204 0.97017 1.20788 0.93557 0.93974 0.89114 1.42547 1.04398 1.65185 1.26595 1.19595 0.85336 1.27396 1.05299 0.91164 1.25487 1.01664 1.01368 0.97875 1.69790 1.34373 1.41906 1.15573 0.85159 0.80551 0.77113 0.77451 1.19443 1.22258 1.21604 1.45867 1.65849 1.14881 1.08205 1.20467 0.77993 0.87103 0.85353 1.90816 1.50831 1.17244 1.85175 1.22349 1.04615 0.89902 0.81950 0.79745 1.22301 0.90756 1.02776 1.06420 1.48227 1.29404 1.16663 1.14389 1.78882 1.15956 0.96576 1.16616 1.78591 1.12719 1.21778 0.97734 1.74870 1.12663 1.03591 1.26490 1.26914 0.98109 0.99167 0.83299 1.19632 0.91610 0.88991 0.98888 1.22132 0.97011 1.04096 0.97542 1.21770 1.01750 1.03021 0.92299 1.22180 1.01391 0.94075 1.03287 0.90766 0.93421 0.90049 0.90255 0.89264 0.95123 0.98197 0.79147 0.93916 0.74234 0.92337 0.85808 0.88115 0.93432 0.86677 0.92365 0.92328 0.88004 0.93172 0.91195 0.87018 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.48 71.98 0.68 -2.06 16 2 C 0.15 3.40 2.57 44.99 0.12 3.52 16 3 H 0.06 1.81 7.58 -2.39 -0.02 1.79 16 4 C -0.12 -3.01 4.87 30.59 0.15 -2.86 16 5 C 0.15 5.47 6.15 86.38 0.53 6.00 16 6 N -0.74 -35.46 5.60 -343.47 -1.92 -37.39 16 7 C -0.24 -13.21 9.99 84.03 0.84 -12.37 16 8 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 9 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 10 N -0.97 -56.97 13.06 21.65 0.28 -56.69 16 11 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 14 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 15 N -0.69 -12.44 4.42 -442.54 -1.96 -14.40 16 16 C 0.51 11.26 7.15 87.66 0.63 11.88 16 17 O -0.56 -18.58 15.55 -3.02 -0.05 -18.63 16 18 C 0.12 1.83 2.25 44.25 0.10 1.93 16 19 H 0.19 1.23 3.74 -2.39 -0.01 1.22 16 20 C -0.16 -2.16 9.30 71.98 0.67 -1.49 16 21 N -0.29 -6.67 2.76 -321.35 -0.89 -7.55 16 22 N -0.09 -3.06 12.42 37.02 0.46 -2.60 16 23 N -0.11 -3.95 13.43 37.01 0.50 -3.45 16 24 N -0.33 -9.57 11.71 -50.45 -0.59 -10.16 16 25 C 0.20 4.37 6.40 138.14 0.88 5.25 16 26 C 0.01 0.14 0.75 -52.93 -0.04 0.10 16 27 C -0.15 -1.24 8.31 71.98 0.60 -0.65 16 28 C -0.13 -1.34 8.00 71.98 0.58 -0.76 16 29 C -0.15 -0.73 8.31 71.98 0.60 -0.13 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.03 1.04 7.75 -2.39 -0.02 1.02 16 36 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.38 18.82 7.67 -92.71 -0.71 18.11 16 38 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 39 H 0.42 4.86 8.02 -92.70 -0.74 4.12 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.12 1.00 7.56 -2.39 -0.02 0.98 16 42 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 44 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.06 0.44 5.57 -2.39 -0.01 0.42 16 46 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.07 0.18 5.59 -2.38 -0.01 0.16 16 50 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 51 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -82.64 410.60 4.15 -78.49 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -0.51 Total: 20.46 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 6.80 Total: 4.85 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -4.12 Total: -132.24 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.05 Total: -18.63 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -82.64 4.15 -78.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568638656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.376 kcal (2) G-P(sol) polarization free energy of solvation -82.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds