Wall clock time and date at job start Tue Mar 31 2020 21:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47125 * 2 1 4 4 C 1.50699 * 109.47208 * 239.99974 * 2 1 3 5 5 O 1.21279 * 119.99884 * 240.00166 * 4 2 1 6 6 N 1.34770 * 119.99961 * 60.00324 * 4 2 1 7 7 C 1.46500 * 119.99955 * 180.02562 * 6 4 2 8 8 H 1.09000 * 109.47175 * 324.99716 * 7 6 4 9 9 C 1.53006 * 109.46998 * 84.99585 * 7 6 4 10 10 C 1.52997 * 109.47204 * 204.99611 * 7 6 4 11 11 C 1.52996 * 109.46894 * 64.99698 * 10 7 6 12 12 N 1.46505 * 109.46918 * 179.97438 * 11 10 7 13 13 C 1.36939 * 119.99874 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00229 * 0.02562 * 13 12 11 15 15 C 1.38817 * 120.00160 * 180.02562 * 13 12 11 16 16 N 1.31623 * 119.99579 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00260 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47586 * 89.99740 * 17 15 13 19 19 H 1.48499 * 109.47316 * 210.00306 * 17 15 13 20 20 H 1.48507 * 109.47023 * 329.99796 * 17 15 13 21 21 N 1.46502 * 109.46860 * 119.99792 * 2 1 3 22 22 N 1.29017 * 126.43860 * 59.69191 * 21 2 1 23 23 N 1.28746 * 108.80933 * 179.82612 * 22 21 2 24 24 N 1.28836 * 109.39594 * 0.44309 * 23 22 21 25 25 C 1.31071 * 107.99198 * 359.72915 * 24 23 22 26 26 C 1.50699 * 126.66009 * 179.97438 * 25 24 23 27 27 C 1.53002 * 109.47161 * 240.04078 * 26 25 24 28 28 C 1.52999 * 109.47515 * 0.04024 * 26 25 24 29 29 C 1.53002 * 109.47198 * 120.04196 * 26 25 24 30 30 H 1.09001 * 109.46979 * 299.99930 * 1 2 3 31 31 H 1.08993 * 109.47000 * 59.99861 * 1 2 3 32 32 H 1.08993 * 109.46957 * 180.02562 * 1 2 3 33 33 H 0.96997 * 119.99935 * 359.97438 * 6 4 2 34 34 H 1.09001 * 109.47002 * 179.97438 * 9 7 6 35 35 H 1.08993 * 109.46955 * 300.00226 * 9 7 6 36 36 H 1.09000 * 109.47050 * 60.00054 * 9 7 6 37 37 H 1.08994 * 109.47510 * 185.00146 * 10 7 6 38 38 H 1.09001 * 109.47096 * 305.00009 * 10 7 6 39 39 H 1.08998 * 109.47867 * 299.99927 * 11 10 7 40 40 H 1.08993 * 109.47122 * 60.00537 * 11 10 7 41 41 H 0.96994 * 120.00434 * 0.02562 * 12 11 10 42 42 H 0.96997 * 119.99282 * 179.97438 * 16 15 13 43 43 H 1.08997 * 109.46886 * 59.99967 * 27 26 25 44 44 H 1.09000 * 109.47223 * 179.97438 * 27 26 25 45 45 H 1.09003 * 109.47019 * 299.99984 * 27 26 25 46 46 H 1.09001 * 109.46682 * 60.00234 * 28 26 25 47 47 H 1.08999 * 109.47409 * 179.97438 * 28 26 25 48 48 H 1.08997 * 109.47061 * 300.00357 * 28 26 25 49 49 H 1.09003 * 109.47245 * 59.99855 * 29 26 25 50 50 H 1.09000 * 109.47045 * 180.02562 * 29 26 25 51 51 H 1.08996 * 109.46950 * 299.99850 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2499 -2.4545 7 6 2.1947 -0.9409 -3.6507 8 1 3.1938 -1.3334 -3.4614 9 6 1.2501 -2.0945 -3.9942 10 6 2.2464 0.0421 -4.8220 11 6 3.2836 1.1284 -4.5306 12 7 3.3335 2.0693 -5.6525 13 6 4.1956 3.1326 -5.6165 14 1 4.8391 3.2774 -4.7612 15 6 4.2426 4.0245 -6.6792 16 7 3.4581 3.8482 -7.7213 17 14 5.4191 5.4745 -6.6304 18 1 6.7189 5.0779 -7.2291 19 1 4.8434 6.6053 -7.4017 20 1 5.6304 5.8933 -5.2214 21 7 2.0183 -0.6906 1.1962 22 7 1.7798 -1.9151 1.5251 23 7 2.3773 -2.1703 2.6366 24 7 2.9976 -1.1159 3.0408 25 6 2.7953 -0.1651 2.1616 26 6 3.3285 1.2432 2.2204 27 6 2.1599 2.2305 2.2416 28 6 4.1672 1.4185 3.4880 29 6 4.1997 1.5104 0.9914 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.1489 0.5385 -2.5435 34 1 1.6129 -2.6083 -4.8844 35 1 1.2133 -2.7947 -3.1597 36 1 0.2510 -1.7019 -4.1835 37 1 2.5239 -0.4907 -5.7314 38 1 1.2667 0.5012 -4.9545 39 1 3.0061 1.6613 -3.6212 40 1 4.2632 0.6693 -4.3982 41 1 2.7560 1.9391 -6.4208 42 1 3.4907 4.4716 -8.4637 43 1 1.5392 2.0401 3.1171 44 1 2.5455 3.2491 2.2846 45 1 1.5623 2.1057 1.3385 46 1 4.9998 0.7151 3.4729 47 1 4.5532 2.4370 3.5303 48 1 3.5465 1.2281 4.3635 49 1 3.6022 1.3856 0.0883 50 1 4.5857 2.5289 1.0342 51 1 5.0322 0.8071 0.9764 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568638657.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:58 Heat of formation + Delta-G solvation = 77.700069 kcal Electronic energy + Delta-G solvation = -30830.599510 eV Core-core repulsion = 26802.903560 eV Total energy + Delta-G solvation = -4027.695950 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.38345 -40.37108 -37.85954 -36.96996 -35.89953 -34.54274 -32.83152 -31.81262 -31.33578 -30.41431 -28.00130 -27.91367 -27.85684 -25.90140 -24.31615 -24.05521 -23.53043 -21.83327 -21.09416 -20.66722 -20.29287 -18.20974 -17.57531 -17.14672 -16.75365 -16.12157 -16.07315 -15.62982 -14.81075 -14.64332 -14.56714 -14.22988 -14.00381 -13.79224 -13.61172 -13.45153 -13.20941 -13.12064 -12.95796 -12.89017 -12.81339 -12.55558 -12.47679 -12.23038 -12.15963 -12.01202 -11.91628 -11.57971 -11.40529 -11.33443 -11.18704 -11.14246 -11.07443 -10.90996 -10.76637 -10.69191 -10.25027 -10.14239 -9.96221 -9.80266 -9.30161 -8.96615 -7.03170 -5.86153 -3.15569 1.07707 1.57440 2.15566 2.16531 2.76285 3.36602 3.41840 3.43445 3.48977 3.79394 3.98267 4.08117 4.14953 4.34964 4.48017 4.54796 4.70264 4.78056 4.84396 4.97162 5.02126 5.08097 5.19721 5.20355 5.21759 5.28820 5.36557 5.40066 5.44957 5.46637 5.51740 5.57366 5.59001 5.60823 5.64590 5.78603 5.79379 5.87336 5.93477 5.96330 6.08809 6.14814 6.19540 6.27788 6.65280 6.71277 7.15221 7.60241 7.82383 8.32618 8.52963 9.43919 10.00567 10.35002 11.36591 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.011578 B = 0.003005 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.851046 B = 9314.304226 C =11048.356915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.114 3.886 3 H 0.146 0.854 4 C 0.508 3.492 5 O -0.512 6.512 6 N -0.708 5.708 7 C 0.147 3.853 8 H 0.090 0.910 9 C -0.162 4.162 10 C -0.135 4.135 11 C 0.154 3.846 12 N -0.734 5.734 13 C -0.243 4.243 14 H 0.069 0.931 15 C -0.012 4.012 16 N -0.933 5.933 17 Si 0.907 3.093 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.282 1.282 21 N -0.288 5.288 22 N -0.068 5.068 23 N -0.082 5.082 24 N -0.301 5.301 25 C 0.197 3.803 26 C 0.013 3.987 27 C -0.152 4.152 28 C -0.131 4.131 29 C -0.152 4.152 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.404 0.596 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.016 0.984 40 H 0.018 0.982 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.056 0.944 50 H 0.083 0.917 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.796 -4.219 18.131 20.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.008 3.992 3 H 0.164 0.836 4 C 0.290 3.710 5 O -0.386 6.386 6 N -0.361 5.361 7 C 0.043 3.957 8 H 0.108 0.892 9 C -0.220 4.220 10 C -0.174 4.174 11 C 0.027 3.973 12 N -0.378 5.378 13 C -0.374 4.374 14 H 0.087 0.913 15 C -0.209 4.209 16 N -0.581 5.581 17 Si 0.738 3.262 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 N -0.089 5.089 22 N -0.054 5.054 23 N -0.076 5.076 24 N -0.149 5.149 25 C -0.082 4.082 26 C 0.009 3.991 27 C -0.210 4.210 28 C -0.189 4.189 29 C -0.210 4.210 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.239 0.761 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.034 0.966 40 H 0.035 0.965 41 H 0.217 0.783 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.086 0.914 49 H 0.075 0.925 50 H 0.102 0.898 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.309 -6.194 18.778 21.081 hybrid contribution 0.226 1.953 -0.979 2.196 sum -7.083 -4.241 17.799 19.620 Atomic orbital electron populations 1.22186 0.89296 1.05582 1.04965 1.21985 0.98497 0.97431 0.81315 0.83639 1.20008 0.81369 0.85234 0.84410 1.90826 1.36611 1.25068 1.86096 1.46007 1.53227 1.31924 1.04911 1.21076 0.98779 0.92495 0.83395 0.89159 1.22168 0.99636 0.98124 1.02099 1.22084 1.01159 0.97054 0.97070 1.20623 0.95209 0.89767 0.91725 1.42357 1.47816 1.28479 1.19126 1.19205 1.14252 1.01672 1.02239 0.91261 1.24750 0.99881 0.99536 0.96692 1.69656 1.41431 1.38795 1.08224 0.86196 0.80508 0.82222 0.77284 1.21639 1.21700 1.20736 1.47993 1.34152 1.08826 1.17952 1.78905 1.19346 0.96327 1.10795 1.78623 1.07387 1.17979 1.03567 1.74969 1.19722 0.96543 1.23635 1.26051 0.95563 0.99653 0.86899 1.19292 0.96411 0.84031 0.99364 1.22113 0.96861 0.99435 1.02545 1.21747 0.99809 1.02540 0.94806 1.22100 0.99902 1.03930 0.95080 0.90108 0.88545 0.89717 0.76118 0.91240 0.92275 0.92307 0.89924 0.91142 0.96593 0.96455 0.78270 0.93431 0.91459 0.89856 0.92345 0.91357 0.91091 0.91426 0.92541 0.89770 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 9.30 37.16 0.35 -0.64 16 2 C 0.11 1.01 2.25 -69.08 -0.16 0.85 16 3 H 0.15 0.94 3.73 -51.93 -0.19 0.75 16 4 C 0.51 5.92 7.15 -10.99 -0.08 5.84 16 5 O -0.51 -8.31 15.56 5.56 0.09 -8.22 16 6 N -0.71 -7.10 4.42 -53.81 -0.24 -7.34 16 7 C 0.15 1.73 2.57 -67.93 -0.17 1.55 16 8 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 9 C -0.16 -1.69 9.48 37.16 0.35 -1.34 16 10 C -0.14 -1.83 4.87 -26.73 -0.13 -1.96 16 11 C 0.15 2.79 6.15 -4.04 -0.02 2.76 16 12 N -0.73 -17.44 5.60 -59.91 -0.34 -17.77 16 13 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 14 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 16 N -0.93 -27.22 13.06 55.49 0.72 -26.50 16 17 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 N -0.29 -3.43 2.75 -52.93 -0.15 -3.58 16 22 N -0.07 -1.03 12.43 60.35 0.75 -0.28 16 23 N -0.08 -1.32 13.43 60.35 0.81 -0.51 16 24 N -0.30 -4.33 11.71 32.70 0.38 -3.95 16 25 C 0.20 2.29 6.40 -155.43 -1.00 1.29 16 26 C 0.01 0.10 0.75 -155.66 -0.12 -0.02 16 27 C -0.15 -0.85 8.31 37.16 0.31 -0.54 16 28 C -0.13 -0.96 8.00 37.16 0.30 -0.66 16 29 C -0.15 -1.24 8.31 37.16 0.31 -0.94 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.35 7.56 -51.93 -0.39 -0.05 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.40 3.07 8.02 -40.82 -0.33 2.74 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.02 0.28 7.75 -51.93 -0.40 -0.12 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.38 9.58 7.67 -40.82 -0.31 9.27 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.28 5.58 -51.93 -0.29 -0.01 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.06 0.47 5.58 -51.93 -0.29 0.18 16 50 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 410.61 15.07 6.19 6.19 Total: -1.00 -35.52 410.61 -5.60 -41.12 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -8.49 Total: 5.14 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -0.31 Total: -0.88 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: 1.95 Total: -59.92 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.52 -5.60 -41.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568638657.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.825 kcal (2) G-P(sol) polarization free energy of solvation -35.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds