Wall clock time and date at job start Tue Mar 31 2020 21:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47125 * 2 1 4 4 C 1.50699 * 109.47208 * 239.99974 * 2 1 3 5 5 O 1.21279 * 119.99884 * 240.00166 * 4 2 1 6 6 N 1.34770 * 119.99961 * 60.00324 * 4 2 1 7 7 C 1.46500 * 119.99955 * 180.02562 * 6 4 2 8 8 H 1.09000 * 109.47175 * 324.99716 * 7 6 4 9 9 C 1.53006 * 109.46998 * 84.99585 * 7 6 4 10 10 C 1.52997 * 109.47204 * 204.99611 * 7 6 4 11 11 C 1.52996 * 109.46894 * 64.99698 * 10 7 6 12 12 N 1.46505 * 109.46918 * 179.97438 * 11 10 7 13 13 C 1.36939 * 119.99874 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00229 * 0.02562 * 13 12 11 15 15 C 1.38817 * 120.00160 * 180.02562 * 13 12 11 16 16 N 1.31623 * 119.99579 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00260 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47586 * 89.99740 * 17 15 13 19 19 H 1.48499 * 109.47316 * 210.00306 * 17 15 13 20 20 H 1.48507 * 109.47023 * 329.99796 * 17 15 13 21 21 N 1.46502 * 109.46860 * 119.99792 * 2 1 3 22 22 N 1.29017 * 126.43860 * 59.69191 * 21 2 1 23 23 N 1.28746 * 108.80933 * 179.82612 * 22 21 2 24 24 N 1.28836 * 109.39594 * 0.44309 * 23 22 21 25 25 C 1.31071 * 107.99198 * 359.72915 * 24 23 22 26 26 C 1.50699 * 126.66009 * 179.97438 * 25 24 23 27 27 C 1.53002 * 109.47161 * 240.04078 * 26 25 24 28 28 C 1.52999 * 109.47515 * 0.04024 * 26 25 24 29 29 C 1.53002 * 109.47198 * 120.04196 * 26 25 24 30 30 H 1.09001 * 109.46979 * 299.99930 * 1 2 3 31 31 H 1.08993 * 109.47000 * 59.99861 * 1 2 3 32 32 H 1.08993 * 109.46957 * 180.02562 * 1 2 3 33 33 H 0.96997 * 119.99935 * 359.97438 * 6 4 2 34 34 H 1.09001 * 109.47002 * 179.97438 * 9 7 6 35 35 H 1.08993 * 109.46955 * 300.00226 * 9 7 6 36 36 H 1.09000 * 109.47050 * 60.00054 * 9 7 6 37 37 H 1.08994 * 109.47510 * 185.00146 * 10 7 6 38 38 H 1.09001 * 109.47096 * 305.00009 * 10 7 6 39 39 H 1.08998 * 109.47867 * 299.99927 * 11 10 7 40 40 H 1.08993 * 109.47122 * 60.00537 * 11 10 7 41 41 H 0.96994 * 120.00434 * 0.02562 * 12 11 10 42 42 H 0.96997 * 119.99282 * 179.97438 * 16 15 13 43 43 H 1.08997 * 109.46886 * 59.99967 * 27 26 25 44 44 H 1.09000 * 109.47223 * 179.97438 * 27 26 25 45 45 H 1.09003 * 109.47019 * 299.99984 * 27 26 25 46 46 H 1.09001 * 109.46682 * 60.00234 * 28 26 25 47 47 H 1.08999 * 109.47409 * 179.97438 * 28 26 25 48 48 H 1.08997 * 109.47061 * 300.00357 * 28 26 25 49 49 H 1.09003 * 109.47245 * 59.99855 * 29 26 25 50 50 H 1.09000 * 109.47045 * 180.02562 * 29 26 25 51 51 H 1.08996 * 109.46950 * 299.99850 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2499 -2.4545 7 6 2.1947 -0.9409 -3.6507 8 1 3.1938 -1.3334 -3.4614 9 6 1.2501 -2.0945 -3.9942 10 6 2.2464 0.0421 -4.8220 11 6 3.2836 1.1284 -4.5306 12 7 3.3335 2.0693 -5.6525 13 6 4.1956 3.1326 -5.6165 14 1 4.8391 3.2774 -4.7612 15 6 4.2426 4.0245 -6.6792 16 7 3.4581 3.8482 -7.7213 17 14 5.4191 5.4745 -6.6304 18 1 6.7189 5.0779 -7.2291 19 1 4.8434 6.6053 -7.4017 20 1 5.6304 5.8933 -5.2214 21 7 2.0183 -0.6906 1.1962 22 7 1.7798 -1.9151 1.5251 23 7 2.3773 -2.1703 2.6366 24 7 2.9976 -1.1159 3.0408 25 6 2.7953 -0.1651 2.1616 26 6 3.3285 1.2432 2.2204 27 6 2.1599 2.2305 2.2416 28 6 4.1672 1.4185 3.4880 29 6 4.1997 1.5104 0.9914 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.1489 0.5385 -2.5435 34 1 1.6129 -2.6083 -4.8844 35 1 1.2133 -2.7947 -3.1597 36 1 0.2510 -1.7019 -4.1835 37 1 2.5239 -0.4907 -5.7314 38 1 1.2667 0.5012 -4.9545 39 1 3.0061 1.6613 -3.6212 40 1 4.2632 0.6693 -4.3982 41 1 2.7560 1.9391 -6.4208 42 1 3.4907 4.4716 -8.4637 43 1 1.5392 2.0401 3.1171 44 1 2.5455 3.2491 2.2846 45 1 1.5623 2.1057 1.3385 46 1 4.9998 0.7151 3.4729 47 1 4.5532 2.4370 3.5303 48 1 3.5465 1.2281 4.3635 49 1 3.6022 1.3856 0.0883 50 1 4.5857 2.5289 1.0342 51 1 5.0322 0.8071 0.9764 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568638657.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:57 Heat of formation + Delta-G solvation = 52.370690 kcal Electronic energy + Delta-G solvation = -30831.697875 eV Core-core repulsion = 26802.903560 eV Total energy + Delta-G solvation = -4028.794314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -45.36806 -41.33350 -38.59017 -38.05448 -36.86494 -36.15020 -33.97619 -33.13345 -32.50779 -31.45324 -29.42029 -28.53460 -28.35035 -26.61532 -25.90258 -24.98968 -24.66567 -23.22664 -22.20506 -21.61841 -21.05415 -19.37362 -18.85987 -18.43467 -17.72602 -17.06801 -16.85558 -16.69649 -16.41090 -15.57860 -15.43546 -15.29660 -15.16960 -15.05460 -14.83312 -14.45032 -14.29309 -14.10290 -13.80902 -13.57963 -13.55503 -13.30288 -13.11902 -13.06284 -12.94739 -12.90227 -12.88365 -12.73278 -12.72442 -12.38982 -12.31668 -12.24927 -12.19636 -12.05105 -11.98102 -11.94443 -11.80357 -11.64773 -11.21728 -10.94717 -10.90151 -10.26865 -8.98779 -7.94360 -5.22901 0.12492 0.75218 1.11484 1.26000 1.49557 1.51179 1.58997 1.88536 2.57069 2.74383 3.01847 3.34100 3.36343 3.40156 3.43751 3.62539 3.76609 3.91928 4.00957 4.03412 4.14467 4.24742 4.37898 4.42864 4.44534 4.52198 4.55292 4.61118 4.63109 4.67184 4.77267 4.77881 4.80138 4.84459 4.90862 4.92562 4.96483 4.98080 5.04619 5.17489 5.20570 5.25854 5.27214 5.32872 5.35935 5.45220 5.51246 6.27774 6.30530 6.96830 7.35368 7.49358 8.10922 8.33712 9.28915 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.011578 B = 0.003005 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.851046 B = 9314.304226 C =11048.356915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.112 3.888 3 H 0.175 0.825 4 C 0.508 3.492 5 O -0.563 6.563 6 N -0.695 5.695 7 C 0.155 3.845 8 H 0.066 0.934 9 C -0.155 4.155 10 C -0.119 4.119 11 C 0.153 3.847 12 N -0.745 5.745 13 C -0.245 4.245 14 H 0.074 0.926 15 C -0.072 4.072 16 N -0.968 5.968 17 Si 0.969 3.031 18 H -0.292 1.292 19 H -0.295 1.295 20 H -0.266 1.266 21 N -0.284 5.284 22 N -0.089 5.089 23 N -0.114 5.114 24 N -0.326 5.326 25 C 0.203 3.797 26 C 0.013 3.987 27 C -0.151 4.151 28 C -0.130 4.130 29 C -0.152 4.152 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.067 0.933 33 H 0.419 0.581 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.033 0.967 40 H 0.003 0.997 41 H 0.375 0.625 42 H 0.251 0.749 43 H 0.067 0.933 44 H 0.106 0.894 45 H 0.069 0.931 46 H 0.049 0.951 47 H 0.097 0.903 48 H 0.063 0.937 49 H 0.054 0.946 50 H 0.108 0.892 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.805 -1.916 18.632 20.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.007 3.993 3 H 0.192 0.808 4 C 0.291 3.709 5 O -0.441 6.441 6 N -0.348 5.348 7 C 0.050 3.950 8 H 0.084 0.916 9 C -0.213 4.213 10 C -0.157 4.157 11 C 0.027 3.973 12 N -0.388 5.388 13 C -0.377 4.377 14 H 0.092 0.908 15 C -0.265 4.265 16 N -0.618 5.618 17 Si 0.798 3.202 18 H -0.220 1.220 19 H -0.222 1.222 20 H -0.190 1.190 21 N -0.086 5.086 22 N -0.075 5.075 23 N -0.108 5.108 24 N -0.174 5.174 25 C -0.076 4.076 26 C 0.010 3.990 27 C -0.208 4.208 28 C -0.188 4.188 29 C -0.210 4.210 30 H 0.116 0.884 31 H 0.147 0.853 32 H 0.086 0.914 33 H 0.258 0.742 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.051 0.949 40 H 0.021 0.979 41 H 0.207 0.793 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.124 0.876 45 H 0.088 0.912 46 H 0.068 0.932 47 H 0.116 0.884 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.127 0.873 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.341 -3.882 19.307 21.386 hybrid contribution 0.579 1.214 -1.132 1.758 sum -7.762 -2.668 18.174 19.941 Atomic orbital electron populations 1.22298 0.86732 1.05310 1.07427 1.22377 1.00425 0.97668 0.78836 0.80804 1.20462 0.80402 0.84603 0.85394 1.90816 1.38998 1.27470 1.86838 1.45865 1.52776 1.32111 1.04055 1.20849 0.98258 0.92565 0.83306 0.91596 1.22091 1.00235 0.97200 1.01745 1.21905 1.00415 0.95880 0.97499 1.20784 0.95946 0.90031 0.90578 1.42563 1.47144 1.28792 1.20330 1.19596 1.14026 1.02061 1.02005 0.90786 1.25515 1.01860 1.02389 0.96711 1.69798 1.43325 1.39812 1.08891 0.85213 0.78154 0.79023 0.77832 1.21952 1.22156 1.19034 1.48215 1.33743 1.08080 1.18562 1.78811 1.19951 0.97962 1.10732 1.78576 1.08580 1.19169 1.04428 1.74883 1.20489 0.96966 1.25102 1.26780 0.94268 1.00541 0.85962 1.19567 0.97492 0.82398 0.99558 1.22166 0.95851 0.99606 1.03211 1.21767 0.99061 1.03625 0.94359 1.22134 0.99184 1.04764 0.94953 0.88355 0.85338 0.91381 0.74237 0.90722 0.93614 0.90337 0.90328 0.89461 0.94931 0.97937 0.79257 0.93994 0.91397 0.87566 0.91170 0.93212 0.88409 0.91806 0.92695 0.87316 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.30 71.98 0.67 -0.81 16 2 C 0.11 1.75 2.25 44.24 0.10 1.85 16 3 H 0.18 1.67 3.73 -2.39 -0.01 1.66 16 4 C 0.51 11.25 7.15 87.66 0.63 11.88 16 5 O -0.56 -18.56 15.56 -3.03 -0.05 -18.61 16 6 N -0.69 -12.44 4.42 -442.54 -1.96 -14.40 16 7 C 0.16 3.44 2.57 44.99 0.12 3.55 16 8 H 0.07 1.83 7.58 -2.39 -0.02 1.81 16 9 C -0.15 -2.98 9.48 71.98 0.68 -2.29 16 10 C -0.12 -2.99 4.87 30.59 0.15 -2.84 16 11 C 0.15 5.29 6.15 86.38 0.53 5.82 16 12 N -0.75 -34.67 5.60 -343.45 -1.92 -36.60 16 13 C -0.25 -12.86 9.99 84.03 0.84 -12.02 16 14 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 15 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 16 N -0.97 -56.42 13.06 21.65 0.28 -56.14 16 17 Si 0.97 43.75 29.55 68.60 2.03 45.78 16 18 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 19 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 21 N -0.28 -6.62 2.75 -321.36 -0.89 -7.50 16 22 N -0.09 -2.72 12.43 37.02 0.46 -2.26 16 23 N -0.11 -3.82 13.43 37.01 0.50 -3.32 16 24 N -0.33 -9.65 11.71 -50.45 -0.59 -10.24 16 25 C 0.20 4.62 6.40 138.13 0.88 5.50 16 26 C 0.01 0.19 0.75 -52.93 -0.04 0.15 16 27 C -0.15 -1.15 8.31 71.98 0.60 -0.55 16 28 C -0.13 -1.72 8.00 71.98 0.58 -1.15 16 29 C -0.15 -2.19 8.31 71.98 0.60 -1.59 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.13 0.36 7.56 -2.39 -0.02 0.34 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.42 4.86 8.02 -92.71 -0.74 4.12 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 38 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.03 1.04 7.75 -2.39 -0.02 1.02 16 40 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.38 18.53 7.67 -92.71 -0.71 17.82 16 42 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 43 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.07 0.36 5.58 -2.39 -0.01 0.35 16 46 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 49 H 0.05 0.79 5.58 -2.39 -0.01 0.77 16 50 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -79.70 410.61 4.15 -75.54 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -0.51 Total: 23.73 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 6.80 Total: 4.03 kcal Atomic # 7 Polarization: -126.34 SS G_CDS: -4.12 Total: -130.46 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.05 Total: -18.61 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -79.70 4.15 -75.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568638657.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.914 kcal (2) G-P(sol) polarization free energy of solvation -79.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds