Wall clock time and date at job start Tue Mar 31 2020 21:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 119.99989 * 2 1 4 4 O 1.21588 * 120.00381 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99549 * 180.02562 * 3 2 1 6 6 C 1.46501 * 119.99655 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47398 * 179.97438 * 6 5 3 8 8 C 1.50693 * 109.47545 * 180.02562 * 7 6 5 9 9 O 1.21287 * 120.00238 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00515 * 180.02562 * 8 7 6 11 11 C 1.47091 * 125.62475 * 359.97201 * 10 8 7 12 12 C 1.54452 * 107.29775 * 179.03697 * 11 10 8 13 13 C 1.54393 * 102.86998 * 338.49601 * 12 11 10 14 14 C 1.47573 * 125.63419 * 179.97438 * 10 8 7 15 15 C 1.52110 * 110.49962 * 152.63443 * 13 12 11 16 16 C 1.53335 * 109.44452 * 64.09166 * 15 13 12 17 17 N 1.46928 * 108.68926 * 53.29417 * 16 15 13 18 18 C 1.36945 * 120.54770 * 125.63861 * 17 16 15 19 19 H 1.07998 * 120.00194 * 331.63141 * 18 17 16 20 20 C 1.38809 * 119.99564 * 151.63714 * 18 17 16 21 21 N 1.31623 * 120.00442 * 342.92845 * 20 18 17 22 22 Si 1.86797 * 119.99773 * 162.93148 * 20 18 17 23 23 H 1.48507 * 109.47192 * 90.00035 * 22 20 18 24 24 H 1.48499 * 109.47347 * 209.99889 * 22 20 18 25 25 H 1.48499 * 109.47254 * 329.99872 * 22 20 18 26 26 C 1.46930 * 118.90135 * 305.65610 * 17 16 15 27 27 C 1.52109 * 110.51603 * 276.65420 * 13 12 11 28 28 H 1.09003 * 109.47095 * 59.99551 * 1 2 3 29 29 H 1.08992 * 109.47520 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46811 * 300.00405 * 1 2 3 31 31 H 0.96998 * 119.99819 * 179.97438 * 2 1 3 32 32 H 0.96991 * 120.00199 * 359.97438 * 5 3 2 33 33 H 1.09002 * 109.47173 * 59.99568 * 6 5 3 34 34 H 1.08997 * 109.47331 * 299.99735 * 6 5 3 35 35 H 1.09002 * 109.47041 * 59.99818 * 7 6 5 36 36 H 1.08997 * 109.46933 * 300.00309 * 7 6 5 37 37 H 1.09005 * 109.87843 * 59.60696 * 11 10 8 38 38 H 1.09003 * 110.00021 * 298.53059 * 11 10 8 39 39 H 1.09008 * 110.73209 * 220.15483 * 12 11 10 40 40 H 1.08998 * 110.73485 * 96.84680 * 12 11 10 41 41 H 1.08996 * 110.37246 * 84.46797 * 14 10 8 42 42 H 1.08998 * 110.37134 * 322.12314 * 14 10 8 43 43 H 1.09007 * 109.47512 * 184.08227 * 15 13 12 44 44 H 1.08999 * 109.47804 * 304.09222 * 15 13 12 45 45 H 1.09004 * 109.60097 * 173.05619 * 16 15 13 46 46 H 1.09000 * 109.60102 * 293.53353 * 16 15 13 47 47 H 0.96996 * 120.00009 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.60246 * 294.59005 * 26 17 16 49 49 H 1.08999 * 109.73619 * 174.18429 * 26 17 16 50 50 H 1.09003 * 109.46963 * 55.91279 * 27 13 12 51 51 H 1.08997 * 109.47839 * 175.92111 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4867 1.1671 -0.0005 6 6 4.2192 2.4358 -0.0011 7 6 5.7234 2.1563 -0.0010 8 6 6.4769 3.4613 -0.0009 9 8 5.8706 4.5117 -0.0014 10 7 7.8247 3.4613 -0.0013 11 6 8.6815 2.2658 -0.0013 12 6 10.1475 2.7514 -0.0266 13 6 10.0258 4.1832 -0.5912 14 6 8.6844 4.6608 -0.0019 15 6 11.1715 5.0512 -0.0935 16 6 12.4981 4.5052 -0.6351 17 7 12.3943 4.3792 -2.0953 18 6 13.3167 4.9763 -2.9127 19 1 13.8249 5.8726 -2.5891 20 6 13.5981 4.4296 -4.1571 21 7 13.2536 3.1875 -4.4235 22 14 14.4659 5.4566 -5.4538 23 1 15.9348 5.2831 -5.3214 24 1 14.0352 5.0154 -6.8047 25 1 14.1177 6.8880 -5.2662 26 6 11.2844 3.6023 -2.6639 27 6 9.9648 4.1537 -2.1107 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.9500 -0.8400 0.0004 32 1 3.9716 0.3271 -0.0005 33 1 3.9562 3.0076 0.8888 34 1 3.9556 3.0072 -0.8911 35 1 5.9868 1.5843 -0.8907 36 1 5.9867 1.5851 0.8892 37 1 8.4756 1.6621 -0.8853 38 1 8.5013 1.6780 0.8989 39 1 10.7497 2.1264 -0.6863 40 1 10.5662 2.7675 0.9796 41 1 8.8257 5.0268 1.0150 42 1 8.2497 5.4389 -0.6293 43 1 11.0303 6.0743 -0.4421 44 1 11.1908 5.0380 0.9962 45 1 13.3061 5.1923 -0.3838 46 1 12.6970 3.5272 -0.1969 47 1 13.4500 2.8056 -5.2932 48 1 11.3895 2.5545 -2.3824 49 1 11.2912 3.6916 -3.7502 50 1 9.1417 3.5139 -2.4290 51 1 9.8065 5.1641 -2.4878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569469517.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:30 Heat of formation + Delta-G solvation = -44.000059 kcal Electronic energy + Delta-G solvation = -29850.595902 eV Core-core repulsion = 25785.329888 eV Total energy + Delta-G solvation = -4065.266015 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.54380 -40.12053 -38.64440 -35.96794 -35.53771 -34.77103 -33.18980 -31.45205 -30.67496 -30.00157 -29.53836 -27.47915 -26.59482 -24.42510 -23.44980 -22.72485 -22.26839 -21.28632 -20.86440 -19.51889 -18.82521 -17.97826 -17.31120 -16.59051 -16.52657 -16.17333 -15.89142 -15.37210 -14.93251 -14.89081 -14.58883 -14.37208 -14.00515 -13.89977 -13.65401 -13.48888 -13.15419 -13.04394 -12.80840 -12.75596 -12.60129 -12.34885 -12.16380 -12.10937 -11.71919 -11.58033 -11.33693 -11.09731 -10.77551 -10.71731 -10.55419 -10.49533 -10.23760 -10.17129 -9.94365 -9.86706 -9.63337 -9.55948 -9.46284 -9.16422 -8.60100 -8.47590 -6.67941 -5.82034 -3.23951 2.31174 2.57138 2.93847 3.01782 3.35592 3.43167 3.45809 3.92012 4.40879 4.47704 4.50452 4.70312 4.74517 4.81654 4.90227 5.06464 5.12307 5.17463 5.28165 5.36142 5.38109 5.42786 5.49774 5.63369 5.63752 5.74229 5.76693 5.89820 5.92045 6.05579 6.06752 6.07391 6.13853 6.19029 6.25449 6.32416 6.47734 6.53606 6.59376 6.67371 6.70733 6.82213 6.94111 7.32591 7.51125 7.62402 7.66384 7.77564 8.10534 8.30498 8.43021 9.19152 9.82649 10.38758 11.26347 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021123 B = 0.002005 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.236346 B =13958.302976 C =14517.583089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.753 5.753 3 C 0.701 3.299 4 O -0.586 6.586 5 N -0.747 5.747 6 C 0.154 3.846 7 C -0.149 4.149 8 C 0.531 3.469 9 O -0.541 6.541 10 N -0.613 5.613 11 C 0.101 3.899 12 C -0.124 4.124 13 C -0.055 4.055 14 C 0.113 3.887 15 C -0.118 4.118 16 C 0.148 3.852 17 N -0.591 5.591 18 C -0.252 4.252 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.900 3.100 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.173 3.827 27 C -0.125 4.125 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.397 0.603 32 H 0.395 0.605 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.019 0.981 47 H 0.253 0.747 48 H 0.019 0.981 49 H 0.086 0.914 50 H 0.047 0.953 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.889 -10.866 11.368 23.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.409 5.409 3 C 0.401 3.599 4 O -0.463 6.463 5 N -0.403 5.403 6 C 0.029 3.971 7 C -0.189 4.189 8 C 0.319 3.681 9 O -0.419 6.419 10 N -0.346 5.346 11 C -0.022 4.022 12 C -0.162 4.162 13 C -0.056 4.056 14 C -0.009 4.009 15 C -0.158 4.158 16 C 0.021 3.979 17 N -0.313 5.313 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.730 3.270 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.047 3.953 27 C -0.164 4.164 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.230 0.770 32 H 0.229 0.771 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.037 0.963 47 H 0.063 0.937 48 H 0.037 0.963 49 H 0.105 0.895 50 H 0.066 0.934 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.849 -9.388 11.207 23.072 hybrid contribution 0.974 -0.523 -0.726 1.323 sum -16.875 -9.911 10.481 22.200 Atomic orbital electron populations 1.21392 0.78099 1.01924 1.02375 1.44916 1.07817 1.07087 1.81041 1.15936 0.81698 0.84316 0.77973 1.90966 1.67788 1.30299 1.57232 1.45085 1.04785 1.09800 1.80628 1.20885 0.87967 0.84111 1.04124 1.21768 0.95127 0.96944 1.05054 1.19879 0.80858 0.90802 0.76598 1.90749 1.67196 1.33618 1.50307 1.48555 1.04640 1.08955 1.72488 1.22141 0.91326 0.87614 1.01114 1.22722 0.94050 0.97419 1.02003 1.21001 0.93035 0.94601 0.96997 1.22379 0.90027 0.87825 1.00638 1.21853 0.96317 0.99178 0.98455 1.20904 0.93629 0.97373 0.85981 1.44025 1.27206 1.60777 0.99330 1.19171 1.16944 1.04443 0.97579 0.91797 1.25022 0.99500 0.95215 0.99855 1.70017 1.50830 1.11727 1.22195 0.86333 0.79301 0.80023 0.81337 1.21413 1.21592 1.20499 1.20805 0.82860 0.92122 0.99469 1.22015 1.00493 1.01360 0.92576 0.92330 0.90675 0.92377 0.77008 0.77119 0.90624 0.90519 0.88154 0.88365 0.91336 0.91762 0.88785 0.90934 0.91798 0.90555 0.92025 0.92879 0.92805 0.96312 0.93684 0.96286 0.89544 0.93418 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.62 10.70 59.85 0.64 1.26 16 2 N -0.75 -5.02 5.72 -72.07 -0.41 -5.43 16 3 C 0.70 7.52 8.57 -86.91 -0.74 6.78 16 4 O -0.59 -9.26 16.34 5.29 0.09 -9.18 16 5 N -0.75 -6.07 5.56 -65.23 -0.36 -6.43 16 6 C 0.15 1.61 4.96 -4.04 -0.02 1.59 16 7 C -0.15 -1.26 5.00 -27.89 -0.14 -1.40 16 8 C 0.53 6.97 7.85 -10.99 -0.09 6.88 16 9 O -0.54 -9.33 16.25 5.55 0.09 -9.24 16 10 N -0.61 -7.79 3.32 -170.77 -0.57 -8.35 16 11 C 0.10 1.06 6.11 -2.96 -0.02 1.04 16 12 C -0.12 -1.59 4.92 -25.24 -0.12 -1.71 16 13 C -0.06 -0.83 0.55 -154.11 -0.08 -0.91 16 14 C 0.11 1.61 5.81 -2.88 -0.02 1.59 16 15 C -0.12 -1.87 4.84 -27.01 -0.13 -2.00 16 16 C 0.15 2.85 6.24 -3.64 -0.02 2.83 16 17 N -0.59 -13.95 2.98 -172.13 -0.51 -14.47 16 18 C -0.25 -6.69 9.57 -15.06 -0.14 -6.84 16 19 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 20 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 21 N -0.90 -25.39 11.20 55.49 0.62 -24.77 16 22 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 C 0.17 3.84 5.01 -3.63 -0.02 3.82 16 27 C -0.13 -2.25 4.85 -27.01 -0.13 -2.38 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.40 1.27 8.84 -40.82 -0.36 0.91 16 32 H 0.40 1.75 8.49 -40.82 -0.35 1.40 16 33 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 34 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 1.36 6.17 -51.92 -0.32 1.04 16 40 H 0.07 0.84 7.98 -51.93 -0.41 0.43 16 41 H 0.06 0.86 7.99 -51.93 -0.41 0.44 16 42 H 0.08 1.21 7.94 -51.93 -0.41 0.80 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 45 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 46 H 0.02 0.36 7.62 -51.93 -0.40 -0.04 16 47 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 48 H 0.02 0.43 6.55 -51.93 -0.34 0.09 16 49 H 0.09 2.22 6.04 -51.93 -0.31 1.91 16 50 H 0.05 0.80 7.82 -51.93 -0.41 0.40 16 51 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 399.30 15.07 6.02 6.02 Total: -1.00 -35.09 399.30 -9.94 -45.03 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.75 Total: -0.03 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: -1.13 Total: 10.53 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -1.23 Total: -59.45 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.18 Total: -18.41 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.09 -9.94 -45.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569469517.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.034 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds