Wall clock time and date at job start Tue Mar 31 2020 21:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 119.99989 * 2 1 4 4 O 1.21588 * 120.00381 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99549 * 180.02562 * 3 2 1 6 6 C 1.46501 * 119.99655 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47398 * 179.97438 * 6 5 3 8 8 C 1.50693 * 109.47545 * 180.02562 * 7 6 5 9 9 O 1.21287 * 120.00238 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00515 * 180.02562 * 8 7 6 11 11 C 1.47091 * 125.62475 * 359.97201 * 10 8 7 12 12 C 1.54452 * 107.29775 * 179.03697 * 11 10 8 13 13 C 1.54393 * 102.86998 * 338.49601 * 12 11 10 14 14 C 1.47573 * 125.63419 * 179.97438 * 10 8 7 15 15 C 1.52110 * 110.49962 * 152.63443 * 13 12 11 16 16 C 1.53335 * 109.44452 * 64.09166 * 15 13 12 17 17 N 1.46928 * 108.68926 * 53.29417 * 16 15 13 18 18 C 1.36945 * 120.54770 * 125.63861 * 17 16 15 19 19 H 1.07998 * 120.00194 * 331.63141 * 18 17 16 20 20 C 1.38809 * 119.99564 * 151.63714 * 18 17 16 21 21 N 1.31623 * 120.00442 * 342.92845 * 20 18 17 22 22 Si 1.86797 * 119.99773 * 162.93148 * 20 18 17 23 23 H 1.48507 * 109.47192 * 90.00035 * 22 20 18 24 24 H 1.48499 * 109.47347 * 209.99889 * 22 20 18 25 25 H 1.48499 * 109.47254 * 329.99872 * 22 20 18 26 26 C 1.46930 * 118.90135 * 305.65610 * 17 16 15 27 27 C 1.52109 * 110.51603 * 276.65420 * 13 12 11 28 28 H 1.09003 * 109.47095 * 59.99551 * 1 2 3 29 29 H 1.08992 * 109.47520 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46811 * 300.00405 * 1 2 3 31 31 H 0.96998 * 119.99819 * 179.97438 * 2 1 3 32 32 H 0.96991 * 120.00199 * 359.97438 * 5 3 2 33 33 H 1.09002 * 109.47173 * 59.99568 * 6 5 3 34 34 H 1.08997 * 109.47331 * 299.99735 * 6 5 3 35 35 H 1.09002 * 109.47041 * 59.99818 * 7 6 5 36 36 H 1.08997 * 109.46933 * 300.00309 * 7 6 5 37 37 H 1.09005 * 109.87843 * 59.60696 * 11 10 8 38 38 H 1.09003 * 110.00021 * 298.53059 * 11 10 8 39 39 H 1.09008 * 110.73209 * 220.15483 * 12 11 10 40 40 H 1.08998 * 110.73485 * 96.84680 * 12 11 10 41 41 H 1.08996 * 110.37246 * 84.46797 * 14 10 8 42 42 H 1.08998 * 110.37134 * 322.12314 * 14 10 8 43 43 H 1.09007 * 109.47512 * 184.08227 * 15 13 12 44 44 H 1.08999 * 109.47804 * 304.09222 * 15 13 12 45 45 H 1.09004 * 109.60097 * 173.05619 * 16 15 13 46 46 H 1.09000 * 109.60102 * 293.53353 * 16 15 13 47 47 H 0.96996 * 120.00009 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.60246 * 294.59005 * 26 17 16 49 49 H 1.08999 * 109.73619 * 174.18429 * 26 17 16 50 50 H 1.09003 * 109.46963 * 55.91279 * 27 13 12 51 51 H 1.08997 * 109.47839 * 175.92111 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4867 1.1671 -0.0005 6 6 4.2192 2.4358 -0.0011 7 6 5.7234 2.1563 -0.0010 8 6 6.4769 3.4613 -0.0009 9 8 5.8706 4.5117 -0.0014 10 7 7.8247 3.4613 -0.0013 11 6 8.6815 2.2658 -0.0013 12 6 10.1475 2.7514 -0.0266 13 6 10.0258 4.1832 -0.5912 14 6 8.6844 4.6608 -0.0019 15 6 11.1715 5.0512 -0.0935 16 6 12.4981 4.5052 -0.6351 17 7 12.3943 4.3792 -2.0953 18 6 13.3167 4.9763 -2.9127 19 1 13.8249 5.8726 -2.5891 20 6 13.5981 4.4296 -4.1571 21 7 13.2536 3.1875 -4.4235 22 14 14.4659 5.4566 -5.4538 23 1 15.9348 5.2831 -5.3214 24 1 14.0352 5.0154 -6.8047 25 1 14.1177 6.8880 -5.2662 26 6 11.2844 3.6023 -2.6639 27 6 9.9648 4.1537 -2.1107 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.9500 -0.8400 0.0004 32 1 3.9716 0.3271 -0.0005 33 1 3.9562 3.0076 0.8888 34 1 3.9556 3.0072 -0.8911 35 1 5.9868 1.5843 -0.8907 36 1 5.9867 1.5851 0.8892 37 1 8.4756 1.6621 -0.8853 38 1 8.5013 1.6780 0.8989 39 1 10.7497 2.1264 -0.6863 40 1 10.5662 2.7675 0.9796 41 1 8.8257 5.0268 1.0150 42 1 8.2497 5.4389 -0.6293 43 1 11.0303 6.0743 -0.4421 44 1 11.1908 5.0380 0.9962 45 1 13.3061 5.1923 -0.3838 46 1 12.6970 3.5272 -0.1969 47 1 13.4500 2.8056 -5.2932 48 1 11.3895 2.5545 -2.3824 49 1 11.2912 3.6916 -3.7502 50 1 9.1417 3.5139 -2.4290 51 1 9.8065 5.1641 -2.4878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569469517.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:29 Heat of formation + Delta-G solvation = -70.491181 kcal Electronic energy + Delta-G solvation = -29851.744644 eV Core-core repulsion = 25785.329888 eV Total energy + Delta-G solvation = -4066.414756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.61080 -40.97901 -39.84711 -37.39655 -36.34886 -35.56662 -34.77015 -32.79860 -31.82589 -31.59410 -30.59090 -28.72137 -27.45961 -25.92991 -24.59055 -23.89333 -23.56727 -22.40701 -22.06837 -20.44673 -19.81761 -19.28732 -18.45639 -17.97616 -17.41804 -17.09772 -16.82908 -16.77959 -16.30872 -15.83173 -15.74080 -15.38567 -15.31410 -15.02555 -14.96713 -14.72741 -14.46244 -14.29336 -13.97361 -13.81750 -13.56750 -13.42073 -13.20377 -13.02034 -12.96226 -12.90074 -12.58618 -12.48831 -12.47950 -12.21602 -12.15922 -11.80727 -11.73732 -11.52965 -11.41487 -11.15658 -11.07393 -10.87299 -10.48255 -10.45518 -9.80995 -9.61385 -8.60766 -7.85760 -5.29126 1.45050 1.47777 1.56188 1.57095 1.61150 2.11549 2.13068 2.51982 3.26189 3.31236 3.52793 3.64946 3.68638 3.77950 3.89403 3.96234 4.06769 4.29977 4.35077 4.42697 4.47299 4.47812 4.55929 4.66785 4.67244 4.75270 4.78707 4.79435 4.84737 4.90263 4.93171 4.98745 5.00150 5.06509 5.12130 5.24437 5.30655 5.37898 5.39844 5.43455 5.45760 5.49241 5.57901 5.68478 5.83912 6.00474 6.42600 6.54923 7.11194 7.12814 7.18931 7.57471 7.91911 8.41284 9.19683 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021123 B = 0.002005 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.236346 B =13958.302976 C =14517.583089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.735 5.735 3 C 0.691 3.309 4 O -0.645 6.645 5 N -0.728 5.728 6 C 0.161 3.839 7 C -0.130 4.130 8 C 0.524 3.476 9 O -0.593 6.593 10 N -0.613 5.613 11 C 0.103 3.897 12 C -0.120 4.120 13 C -0.054 4.054 14 C 0.119 3.881 15 C -0.108 4.108 16 C 0.144 3.856 17 N -0.610 5.610 18 C -0.261 4.261 19 H 0.061 0.939 20 C -0.048 4.048 21 N -0.930 5.930 22 Si 0.959 3.041 23 H -0.283 1.283 24 H -0.294 1.294 25 H -0.276 1.276 26 C 0.183 3.817 27 C -0.110 4.110 28 H 0.043 0.957 29 H 0.116 0.884 30 H 0.044 0.956 31 H 0.418 0.582 32 H 0.418 0.582 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.048 0.952 46 H 0.028 0.972 47 H 0.249 0.751 48 H 0.013 0.987 49 H 0.044 0.956 50 H 0.058 0.942 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.180 -13.280 13.233 25.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.392 5.392 3 C 0.391 3.609 4 O -0.526 6.526 5 N -0.385 5.385 6 C 0.035 3.965 7 C -0.170 4.170 8 C 0.314 3.686 9 O -0.474 6.474 10 N -0.345 5.345 11 C -0.019 4.019 12 C -0.158 4.158 13 C -0.055 4.055 14 C -0.004 4.004 15 C -0.147 4.147 16 C 0.019 3.981 17 N -0.333 5.333 18 C -0.391 4.391 19 H 0.079 0.921 20 C -0.244 4.244 21 N -0.576 5.576 22 Si 0.787 3.213 23 H -0.210 1.210 24 H -0.220 1.220 25 H -0.201 1.201 26 C 0.057 3.943 27 C -0.149 4.149 28 H 0.061 0.939 29 H 0.134 0.866 30 H 0.063 0.937 31 H 0.254 0.746 32 H 0.255 0.745 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.046 0.954 47 H 0.058 0.942 48 H 0.031 0.969 49 H 0.063 0.937 50 H 0.077 0.923 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -18.104 -11.893 13.099 25.313 hybrid contribution 1.076 0.226 -1.280 1.687 sum -17.028 -11.666 11.819 23.785 Atomic orbital electron populations 1.21534 0.77487 1.04148 1.01026 1.44796 1.08219 1.06724 1.79422 1.16286 0.82334 0.84533 0.77771 1.90929 1.69100 1.32730 1.59873 1.44770 1.03999 1.10054 1.79701 1.20599 0.89771 0.84640 1.01476 1.21706 0.92407 0.94784 1.08116 1.20670 0.80834 0.91757 0.75369 1.90737 1.68165 1.35879 1.52615 1.48630 1.04745 1.09167 1.71987 1.22304 0.89046 0.86804 1.03740 1.22676 0.95770 0.94913 1.02392 1.20871 0.93403 0.96627 0.94568 1.22171 0.89388 0.88105 1.00717 1.21727 0.94458 0.98187 1.00374 1.21059 0.95575 0.97874 0.83572 1.44276 1.27152 1.60797 1.01094 1.19460 1.16907 1.04403 0.98364 0.92112 1.25680 1.00916 0.96177 1.01590 1.70144 1.52322 1.12956 1.22203 0.85413 0.78335 0.78717 0.78804 1.21017 1.22001 1.20116 1.20572 0.84580 0.91976 0.97134 1.21775 0.98284 0.99796 0.95075 0.93859 0.86584 0.93674 0.74591 0.74450 0.93096 0.93744 0.85447 0.84488 0.90144 0.87762 0.90556 0.88871 0.90373 0.93048 0.93474 0.89330 0.93311 0.95391 0.94196 0.96859 0.93721 0.92323 0.94748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.04 10.70 127.77 1.37 2.41 16 2 N -0.74 -8.30 5.72 -500.19 -2.86 -11.16 16 3 C 0.69 14.24 8.57 179.05 1.53 15.77 16 4 O -0.64 -21.01 16.34 -3.99 -0.07 -21.08 16 5 N -0.73 -10.34 5.56 -478.53 -2.66 -13.00 16 6 C 0.16 3.22 4.96 86.38 0.43 3.65 16 7 C -0.13 -1.77 5.00 29.84 0.15 -1.62 16 8 C 0.52 12.73 7.85 87.65 0.69 13.41 16 9 O -0.59 -20.57 16.25 -3.05 -0.05 -20.62 16 10 N -0.61 -13.80 3.32 -812.59 -2.70 -16.50 16 11 C 0.10 1.68 6.11 86.76 0.53 2.21 16 12 C -0.12 -2.65 4.92 31.56 0.16 -2.49 16 13 C -0.05 -1.52 0.55 -51.93 -0.03 -1.55 16 14 C 0.12 3.16 5.81 86.54 0.50 3.67 16 15 C -0.11 -3.23 4.84 30.41 0.15 -3.08 16 16 C 0.14 5.45 6.24 86.41 0.54 5.99 16 17 N -0.61 -29.15 2.98 -698.50 -2.08 -31.23 16 18 C -0.26 -14.12 9.57 84.03 0.80 -13.31 16 19 H 0.06 3.25 7.89 -2.91 -0.02 3.22 16 20 C -0.05 -2.65 4.91 84.86 0.42 -2.23 16 21 N -0.93 -53.62 11.20 21.65 0.24 -53.37 16 22 Si 0.96 44.72 29.59 68.60 2.03 46.75 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 26 C 0.18 8.28 5.01 86.41 0.43 8.72 16 27 C -0.11 -3.96 4.85 30.42 0.15 -3.82 16 28 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.42 1.26 8.84 -92.71 -0.82 0.44 16 32 H 0.42 2.08 8.49 -92.71 -0.79 1.29 16 33 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 34 H 0.04 1.18 8.10 -2.39 -0.02 1.16 16 35 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 2.02 6.17 -2.38 -0.01 2.00 16 40 H 0.09 1.72 7.98 -2.39 -0.02 1.70 16 41 H 0.08 1.89 7.99 -2.39 -0.02 1.87 16 42 H 0.05 1.63 7.94 -2.39 -0.02 1.61 16 43 H 0.05 1.54 8.14 -2.38 -0.02 1.53 16 44 H 0.09 2.06 8.09 -2.39 -0.02 2.04 16 45 H 0.05 1.86 7.93 -2.39 -0.02 1.84 16 46 H 0.03 1.02 7.62 -2.39 -0.02 1.00 16 47 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 48 H 0.01 0.62 6.55 -2.39 -0.02 0.60 16 49 H 0.04 2.39 6.04 -2.39 -0.01 2.37 16 50 H 0.06 1.95 7.82 -2.39 -0.02 1.93 16 51 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -82.76 399.30 -0.99 -83.75 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -0.67 Total: 8.73 kcal Atomic # 6 Polarization: 19.91 SS G_CDS: 7.82 Total: 27.73 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -10.06 Total: -125.27 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -0.11 Total: -41.70 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -82.76 -0.99 -83.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569469517.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.262 kcal (2) G-P(sol) polarization free energy of solvation -82.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds