Wall clock time and date at job start Tue Mar 31 2020 21:18:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.46494 * 120.00216 * 2 1
4 4 C 1.53006 * 109.46964 * 270.00043 * 3 2 1
5 5 C 1.52998 * 109.46756 * 299.99899 * 4 3 2
6 6 C 1.52999 * 109.47100 * 59.99797 * 4 3 2
7 7 C 1.52998 * 109.47061 * 180.02562 * 4 3 2
8 8 N 1.46504 * 109.46953 * 180.02562 * 7 4 3
9 9 C 1.36929 * 119.99788 * 179.97438 * 8 7 4
10 10 H 1.08001 * 120.00288 * 359.97438 * 9 8 7
11 11 C 1.38814 * 119.99763 * 179.97438 * 9 8 7
12 12 N 1.31616 * 120.00458 * 359.97438 * 11 9 8
13 13 Si 1.86808 * 119.99952 * 179.97438 * 11 9 8
14 14 H 1.48500 * 109.47141 * 59.99663 * 13 11 9
15 15 H 1.48501 * 109.47104 * 179.97438 * 13 11 9
16 16 H 1.48505 * 109.46965 * 300.00067 * 13 11 9
17 17 C 1.34778 * 119.99795 * 179.97438 * 2 1 3
18 18 O 1.21531 * 120.00148 * 183.61455 * 17 2 1
19 19 C 1.48004 * 120.00206 * 3.61634 * 17 2 1
20 20 N 1.34194 * 126.69652 * 352.79807 * 19 17 2
21 21 N 1.28988 * 107.25020 * 179.75785 * 20 19 17
22 22 N 1.28721 * 108.98613 * 0.39558 * 21 20 19
23 23 C 1.46502 * 125.31597 * 179.86039 * 22 21 20
24 24 C 1.53005 * 109.47082 * 239.69180 * 23 22 21
25 25 C 1.52999 * 109.46814 * 119.69333 * 23 22 21
26 26 C 1.53003 * 109.47084 * 359.69371 * 23 22 21
27 27 N 1.28863 * 109.36185 * 359.59733 * 22 21 20
28 28 H 1.08998 * 109.47119 * 263.98037 * 1 2 3
29 29 H 1.09003 * 109.46794 * 23.97857 * 1 2 3
30 30 H 1.09000 * 109.47288 * 143.97956 * 1 2 3
31 31 H 1.09004 * 109.47031 * 29.99434 * 3 2 1
32 32 H 1.08993 * 109.47334 * 150.00236 * 3 2 1
33 33 H 1.09003 * 109.47668 * 59.99974 * 5 4 3
34 34 H 1.09007 * 109.47151 * 179.97438 * 5 4 3
35 35 H 1.09005 * 109.47135 * 299.99826 * 5 4 3
36 36 H 1.08993 * 109.47068 * 60.00411 * 6 4 3
37 37 H 1.08997 * 109.46957 * 180.02562 * 6 4 3
38 38 H 1.09003 * 109.46922 * 299.99780 * 6 4 3
39 39 H 1.09004 * 109.46825 * 299.99324 * 7 4 3
40 40 H 1.08997 * 109.47218 * 59.99645 * 7 4 3
41 41 H 0.97000 * 119.99818 * 359.97438 * 8 7 4
42 42 H 0.96999 * 120.00394 * 180.02562 * 12 11 9
43 43 H 1.08997 * 109.47020 * 300.00491 * 24 23 22
44 44 H 1.08996 * 109.46568 * 179.97438 * 24 23 22
45 45 H 1.09000 * 109.46733 * 59.99923 * 24 23 22
46 46 H 1.09003 * 109.46890 * 179.97438 * 25 23 22
47 47 H 1.08998 * 109.47103 * 299.99837 * 25 23 22
48 48 H 1.08997 * 109.47379 * 60.00090 * 25 23 22
49 49 H 1.09002 * 109.47136 * 299.99531 * 26 23 22
50 50 H 1.08998 * 109.47315 * 59.99868 * 26 23 22
51 51 H 1.09003 * 109.46764 * 180.02562 * 26 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4525 1.7103 -1.4426
5 6 3.2794 0.6439 -2.1637
6 6 1.1157 1.8932 -2.1638
7 6 3.2181 3.0350 -1.4426
8 7 3.4618 3.4581 -2.8239
9 6 4.1348 4.6240 -3.0741
10 1 4.4857 5.2319 -2.2532
11 6 4.3661 5.0247 -4.3829
12 7 3.9389 4.2838 -5.3833
13 14 5.2837 6.6157 -4.7243
14 1 6.6410 6.5424 -4.1263
15 1 5.3997 6.8152 -6.1913
16 1 4.5403 7.7539 -4.1266
17 6 2.1389 -1.1672 0.0005
18 8 3.3524 -1.1683 0.0669
19 6 1.4011 -2.4477 -0.0798
20 7 0.0704 -2.6115 -0.0225
21 7 -0.1647 -3.8749 -0.1339
22 7 0.9544 -4.5005 -0.2486
23 6 1.1028 -5.9508 -0.3937
24 6 1.9391 -6.4963 0.7656
25 6 1.8029 -6.2617 -1.7181
26 6 -0.2785 -6.6087 -0.3801
27 7 1.9233 -3.6514 -0.2215
28 1 -0.3633 -0.1078 1.0220
29 1 -0.3633 0.9390 -0.4177
30 1 -0.3634 -0.8312 -0.6043
31 1 1.6084 2.0284 0.5138
32 1 3.1499 1.1383 0.5138
33 1 2.7344 -0.3001 -2.1637
34 1 3.4607 0.9583 -3.1916
35 1 4.2318 0.5136 -1.6499
36 1 0.5267 2.6529 -1.6500
37 1 1.2974 2.2074 -3.1916
38 1 0.5707 0.9492 -2.1638
39 1 2.6294 3.7949 -0.9287
40 1 4.1705 2.9042 -0.9289
41 1 3.1463 2.9124 -3.5611
42 1 4.1009 4.5636 -6.2978
43 1 2.9230 -6.0275 0.7559
44 1 2.0491 -7.5754 0.6579
45 1 1.4403 -6.2747 1.7091
46 1 1.9137 -7.3408 -1.8259
47 1 1.2071 -5.8731 -2.5440
48 1 2.7869 -5.7930 -1.7278
49 1 -0.7772 -6.3872 0.5635
50 1 -0.8742 -6.2201 -1.2060
51 1 -0.1679 -7.6878 -0.4876
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001570675265.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:18:45
Heat of formation + Delta-G solvation = 91.828255 kcal
Electronic energy + Delta-G solvation = -30578.621677 eV
Core-core repulsion = 26551.538371 eV
Total energy + Delta-G solvation = -4027.083306 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.217 amu
Computer time = 1.46 seconds
Orbital eigenvalues (eV)
-45.59292 -41.37284 -38.88393 -38.53942 -36.59850 -35.01580 -34.61641 -33.50740
-32.14194 -29.03387 -28.72976 -28.54978 -28.33127 -27.40384 -27.27898 -25.78742
-25.36254 -24.15121 -21.91428 -21.16276 -19.88872 -19.14507 -18.62146 -18.53282
-17.71402 -17.46532 -16.93255 -16.57820 -15.73239 -15.53357 -15.49027 -15.28770
-15.16248 -15.05934 -14.60919 -14.42185 -14.18897 -14.11357 -13.89175 -13.73437
-13.48621 -13.38893 -13.24604 -13.07123 -12.94473 -12.85601 -12.76538 -12.63478
-12.58441 -12.50456 -12.32229 -12.18867 -12.14711 -12.09884 -11.93903 -11.72312
-11.63520 -11.60668 -11.42672 -11.25940 -10.90144 -9.74503 -8.94599 -7.91977
-5.19552 -0.14503 0.27588 0.65584 1.47411 1.51103 1.56702 1.59332
1.89563 2.58016 2.71824 2.92420 3.41231 3.47883 3.53219 3.62881
3.80895 3.83867 3.93791 3.96458 4.25455 4.28198 4.38822 4.40735
4.46449 4.51338 4.52692 4.57284 4.59390 4.66874 4.72477 4.72726
4.79675 4.82029 4.90457 4.94915 5.01510 5.08369 5.09922 5.14598
5.16386 5.18377 5.19447 5.23990 5.41682 5.44128 5.50856 5.54133
6.08983 6.30207 6.75923 7.06755 7.36755 8.14456 8.37763 9.31780
Molecular weight = 338.22amu
Principal moments of inertia in cm(-1)
A = 0.022764 B = 0.002261 C = 0.002189
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1229.726586 B =12383.418288 C =12789.101767
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.064 3.936
2 N -0.579 5.579
3 C 0.135 3.865
4 C -0.077 4.077
5 C -0.112 4.112
6 C -0.128 4.128
7 C 0.164 3.836
8 N -0.740 5.740
9 C -0.241 4.241
10 H 0.076 0.924
11 C -0.079 4.079
12 N -0.972 5.972
13 Si 0.974 3.026
14 H -0.280 1.280
15 H -0.297 1.297
16 H -0.275 1.275
17 C 0.607 3.393
18 O -0.540 6.540
19 C 0.116 3.884
20 N -0.258 5.258
21 N -0.061 5.061
22 N -0.109 5.109
23 C 0.160 3.840
24 C -0.157 4.157
25 C -0.159 4.159
26 C -0.148 4.148
27 N -0.263 5.263
28 H 0.076 0.924
29 H 0.096 0.904
30 H 0.087 0.913
31 H 0.119 0.881
32 H 0.079 0.921
33 H 0.039 0.961
34 H 0.032 0.968
35 H 0.041 0.959
36 H 0.071 0.929
37 H 0.032 0.968
38 H 0.065 0.935
39 H 0.035 0.965
40 H 0.015 0.985
41 H 0.375 0.625
42 H 0.250 0.750
43 H 0.060 0.940
44 H 0.128 0.872
45 H 0.064 0.936
46 H 0.129 0.871
47 H 0.060 0.940
48 H 0.059 0.941
49 H 0.072 0.928
50 H 0.069 0.931
51 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.695 -26.140 14.630 32.535
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 N -0.310 5.310
3 C 0.012 3.988
4 C -0.078 4.078
5 C -0.169 4.169
6 C -0.186 4.186
7 C 0.037 3.963
8 N -0.383 5.383
9 C -0.373 4.373
10 H 0.094 0.906
11 C -0.270 4.270
12 N -0.623 5.623
13 Si 0.803 3.197
14 H -0.207 1.207
15 H -0.223 1.223
16 H -0.201 1.201
17 C 0.390 3.610
18 O -0.415 6.415
19 C -0.167 4.167
20 N -0.132 5.132
21 N -0.053 5.053
22 N -0.026 5.026
23 C 0.081 3.919
24 C -0.215 4.215
25 C -0.217 4.217
26 C -0.206 4.206
27 N -0.117 5.117
28 H 0.095 0.905
29 H 0.115 0.885
30 H 0.106 0.894
31 H 0.137 0.863
32 H 0.097 0.903
33 H 0.058 0.942
34 H 0.051 0.949
35 H 0.061 0.939
36 H 0.090 0.910
37 H 0.052 0.948
38 H 0.083 0.917
39 H 0.053 0.947
40 H 0.033 0.967
41 H 0.209 0.791
42 H 0.059 0.941
43 H 0.079 0.921
44 H 0.147 0.853
45 H 0.083 0.917
46 H 0.147 0.853
47 H 0.079 0.921
48 H 0.079 0.921
49 H 0.091 0.909
50 H 0.088 0.912
51 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -12.473 -26.387 14.725 32.690
hybrid contribution 1.082 1.162 -0.956 1.853
sum -11.391 -25.225 13.769 30.914
Atomic orbital electron populations
1.22508 0.76249 1.05078 1.03967 1.47547 1.08891 1.04219 1.70337
1.21620 0.98232 0.83666 0.95243 1.21022 0.96217 0.94592 0.96015
1.21578 0.99019 0.97015 0.99331 1.21809 0.95422 1.01577 0.99764
1.20734 0.96128 0.93134 0.86330 1.42580 1.67868 1.25089 1.02788
1.19629 1.26880 0.98813 0.91998 0.90586 1.25560 1.03474 1.02463
0.95551 1.69819 1.53502 1.40807 0.98170 0.85201 0.78609 0.79763
0.76120 1.20678 1.22318 1.20137 1.16366 0.85467 0.81390 0.77801
1.90841 1.13661 1.86436 1.50534 1.25177 0.89585 0.94429 1.07541
1.76240 1.12611 1.06905 1.17428 1.78805 1.11764 0.99685 1.15068
1.51264 0.99949 1.11546 1.39831 1.22193 1.01784 0.67530 1.00368
1.22298 0.99223 1.04668 0.95301 1.22314 1.00443 1.06101 0.92880
1.22171 0.91041 1.03102 1.04319 1.74970 1.19147 0.99184 1.18412
0.90503 0.88533 0.89437 0.86340 0.90251 0.94198 0.94853 0.93935
0.91023 0.94838 0.91656 0.94715 0.96748 0.79150 0.94143 0.92062
0.85322 0.91723 0.85269 0.92095 0.92145 0.90900 0.91187 0.85552
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 1.24 8.33 127.77 1.06 2.31 16
2 N -0.58 -14.95 2.40 -850.01 -2.04 -16.99 16
3 C 0.13 3.62 4.58 86.38 0.40 4.02 16
4 C -0.08 -2.60 0.60 -52.18 -0.03 -2.63 16
5 C -0.11 -4.36 7.02 71.98 0.51 -3.86 16
6 C -0.13 -4.05 7.07 71.98 0.51 -3.54 16
7 C 0.16 6.70 5.15 86.38 0.44 7.15 16
8 N -0.74 -38.66 5.01 -343.45 -1.72 -40.38 16
9 C -0.24 -13.83 9.99 84.04 0.84 -12.99 16
10 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16
11 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16
12 N -0.97 -61.21 13.06 21.65 0.28 -60.93 16
13 Si 0.97 47.37 29.55 68.60 2.03 49.40 16
14 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16
15 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16
16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16
17 C 0.61 18.90 5.98 86.83 0.52 19.42 16
18 O -0.54 -20.36 15.15 -3.81 -0.06 -20.42 16
19 C 0.12 3.31 7.80 137.15 1.07 4.38 16
20 N -0.26 -6.46 9.11 -52.36 -0.48 -6.94 16
21 N -0.06 -1.37 12.21 37.02 0.45 -0.92 16
22 N -0.11 -2.24 3.72 -152.24 -0.57 -2.81 16
23 C 0.16 1.74 1.30 3.61 0.00 1.75 16
24 C -0.16 -1.26 8.66 71.98 0.62 -0.64 16
25 C -0.16 -1.48 8.66 71.98 0.62 -0.86 16
26 C -0.15 -0.84 7.90 71.98 0.57 -0.28 16
27 N -0.26 -7.14 11.86 -52.31 -0.62 -7.76 16
28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
29 H 0.10 1.59 6.32 -2.39 -0.02 1.58 16
30 H 0.09 1.86 5.36 -2.39 -0.01 1.85 16
31 H 0.12 2.43 8.07 -2.39 -0.02 2.41 16
32 H 0.08 2.35 7.37 -2.39 -0.02 2.33 16
33 H 0.04 1.48 6.20 -2.39 -0.01 1.46 16
34 H 0.03 1.46 6.86 -2.38 -0.02 1.45 16
35 H 0.04 1.75 7.81 -2.38 -0.02 1.73 16
36 H 0.07 1.97 8.07 -2.39 -0.02 1.95 16
37 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16
38 H 0.06 1.79 6.08 -2.39 -0.01 1.78 16
39 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16
40 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16
41 H 0.38 20.97 5.36 -92.71 -0.50 20.47 16
42 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16
43 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16
44 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16
45 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16
46 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16
47 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
48 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16
49 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16
50 H 0.07 0.53 8.13 -2.39 -0.02 0.51 16
51 H 0.13 -0.15 8.14 -2.39 -0.02 -0.17 16
Total: -1.00 -77.46 400.14 5.32 -72.14
By element:
Atomic # 1 Polarization: 25.10 SS G_CDS: 0.43 Total: 25.53 kcal
Atomic # 6 Polarization: 2.46 SS G_CDS: 7.60 Total: 10.07 kcal
Atomic # 7 Polarization: -132.03 SS G_CDS: -4.69 Total: -136.72 kcal
Atomic # 8 Polarization: -20.36 SS G_CDS: -0.06 Total: -20.42 kcal
Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal
Total: -77.46 5.32 -72.14 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001570675265.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 163.966 kcal
(2) G-P(sol) polarization free energy of solvation -77.457 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.509 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.320 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.137 kcal
(6) G-S(sol) free energy of system = (1) + (5) 91.828 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.46 seconds