Wall clock time and date at job start Tue Mar 31 2020 21:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 239.99428 * 2 1 3 5 5 C 1.52997 * 109.47131 * 174.99889 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 N 1.46496 * 109.46995 * 180.02562 * 6 5 4 8 8 C 1.36937 * 119.99946 * 180.02562 * 7 6 5 9 9 H 1.08005 * 120.00046 * 0.02562 * 8 7 6 10 10 C 1.38814 * 120.00249 * 179.97438 * 8 7 6 11 11 N 1.31618 * 119.99665 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00093 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47526 * 90.00052 * 12 10 8 14 14 H 1.48501 * 109.46999 * 210.00283 * 12 10 8 15 15 H 1.48504 * 109.47063 * 330.00048 * 12 10 8 16 16 N 1.46502 * 109.46680 * 119.99620 * 2 1 3 17 17 C 1.34781 * 120.00059 * 274.99983 * 16 2 1 18 18 O 1.21277 * 119.99934 * 0.02562 * 17 16 2 19 19 C 1.50699 * 119.99755 * 180.02562 * 17 16 2 20 20 C 1.50705 * 109.46741 * 180.02562 * 19 17 16 21 21 N 1.33315 * 126.55256 * 90.02371 * 20 19 17 22 22 N 1.28991 * 107.35772 * 179.97438 * 21 20 19 23 23 N 1.28783 * 108.72403 * 359.97438 * 22 21 20 24 24 C 1.46503 * 125.44607 * 180.02562 * 23 22 21 25 25 C 1.53002 * 109.47132 * 359.97438 * 24 23 22 26 26 C 1.52997 * 109.46969 * 119.98106 * 24 23 22 27 27 C 1.53003 * 109.46888 * 239.97855 * 24 23 22 28 28 N 1.28881 * 109.10403 * 359.73177 * 23 22 21 29 29 H 1.09010 * 109.47120 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47133 * 299.99981 * 1 2 3 31 31 H 1.08998 * 109.47095 * 60.00889 * 1 2 3 32 32 H 1.09001 * 109.46993 * 54.99758 * 4 2 1 33 33 H 1.09004 * 109.47298 * 295.00173 * 4 2 1 34 34 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 35 35 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 36 36 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 37 37 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 38 38 H 0.96998 * 120.00192 * 359.97438 * 7 6 5 39 39 H 0.97001 * 119.99952 * 180.02562 * 11 10 8 40 40 H 0.96999 * 119.99931 * 95.00625 * 16 2 1 41 41 H 1.08993 * 109.47546 * 299.99667 * 19 17 16 42 42 H 1.09000 * 109.47454 * 60.00643 * 19 17 16 43 43 H 1.09001 * 109.46804 * 60.00357 * 25 24 23 44 44 H 1.09007 * 109.46738 * 179.97438 * 25 24 23 45 45 H 1.08994 * 109.47358 * 299.99906 * 25 24 23 46 46 H 1.08996 * 109.47405 * 59.99614 * 26 24 23 47 47 H 1.08998 * 109.47511 * 180.02562 * 26 24 23 48 48 H 1.09003 * 109.47069 * 299.99292 * 26 24 23 49 49 H 1.08994 * 109.47413 * 60.00210 * 27 24 23 50 50 H 1.09007 * 109.46708 * 180.02562 * 27 24 23 51 51 H 1.08997 * 109.47338 * 299.99680 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 6 4.0749 -1.3342 -2.5631 7 7 5.5350 -1.2313 -2.6244 8 6 6.2188 -1.8048 -3.6630 9 1 5.6816 -2.3326 -4.4372 10 6 7.6022 -1.7068 -3.7214 11 7 8.2567 -1.0631 -2.7783 12 14 8.5348 -2.4885 -5.1386 13 1 8.6670 -1.5074 -6.2454 14 1 9.8853 -2.8982 -4.6763 15 1 7.7936 -3.6816 -5.6207 16 7 2.0183 -0.6906 1.1963 17 6 2.1469 -0.0181 2.3572 18 8 1.8581 1.1585 2.4117 19 6 2.6497 -0.7284 3.5876 20 6 2.6996 0.2399 4.7413 21 7 1.7204 0.4903 5.6107 22 7 2.1592 1.3754 6.4401 23 7 3.3683 1.6803 6.1180 24 6 4.2150 2.6500 6.8174 25 6 3.4406 3.2486 7.9934 26 6 5.4710 1.9484 7.3379 27 6 4.6175 3.7658 5.8510 28 7 3.7164 0.9913 5.0860 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6054 -0.2619 -2.1369 33 1 1.7517 -1.7716 -1.2054 34 1 3.9994 -1.0728 -0.4257 35 1 3.8532 0.4369 -1.3573 36 1 3.7865 -2.3844 -2.5197 37 1 3.6403 -0.8744 -3.4506 38 1 6.0173 -0.7562 -1.9297 39 1 9.2234 -0.9943 -2.8192 40 1 2.2490 -1.6317 1.1527 41 1 1.9775 -1.5506 3.8327 42 1 3.6491 -1.1201 3.3981 43 1 3.1538 2.4537 8.6818 44 1 4.0708 3.9698 8.5139 45 1 2.5458 3.7485 7.6225 46 1 6.0226 1.5220 6.5001 47 1 6.1008 2.6697 7.8586 48 1 5.1842 1.1535 8.0264 49 1 3.7228 4.2657 5.4801 50 1 5.2479 4.4871 6.3712 51 1 5.1692 3.3395 5.0132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571262304.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:21 Heat of formation + Delta-G solvation = 79.315872 kcal Electronic energy + Delta-G solvation = -29102.608448 eV Core-core repulsion = 25074.982565 eV Total energy + Delta-G solvation = -4027.625884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.46064 -39.93460 -37.97784 -36.79825 -34.83565 -33.71711 -33.35762 -32.57908 -31.28522 -29.65620 -29.07951 -28.02053 -27.89226 -25.65952 -24.75011 -23.39987 -22.73075 -21.16026 -20.84620 -20.73192 -20.50312 -17.73626 -17.33807 -17.01787 -16.84465 -16.42774 -15.40183 -15.09711 -14.71952 -14.63014 -14.58688 -14.34049 -13.86495 -13.82520 -13.79191 -13.48954 -13.38907 -13.00051 -12.96067 -12.85606 -12.80673 -12.35436 -12.32855 -12.19695 -12.08257 -12.02125 -11.95765 -11.53456 -11.29863 -11.13945 -11.00553 -10.93958 -10.85214 -10.79850 -10.46210 -10.43338 -10.37254 -10.00532 -9.82648 -9.67618 -9.11809 -8.85566 -6.90258 -5.75081 -3.03660 1.15769 1.66484 2.01023 2.54792 3.10584 3.44086 3.48884 3.50761 3.62261 3.89296 4.05504 4.15946 4.37315 4.55590 4.62891 4.81528 4.89564 4.94865 4.98938 5.00838 5.06111 5.10085 5.14340 5.17237 5.18261 5.27091 5.44455 5.45225 5.50269 5.58488 5.59063 5.60994 5.65541 5.66330 5.79535 5.81467 5.97722 6.09575 6.11267 6.13490 6.22617 6.37335 6.42524 6.48417 6.88203 6.91531 7.41022 7.70871 8.13454 8.29437 8.44110 9.54813 10.14136 10.48372 11.47935 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.010966 B = 0.002168 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.748749 B =12914.274943 C =14869.784654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.088 0.912 4 C -0.123 4.123 5 C -0.125 4.125 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.718 5.718 17 C 0.523 3.477 18 O -0.534 6.534 19 C -0.047 4.047 20 C 0.185 3.815 21 N -0.279 5.279 22 N -0.064 5.064 23 N -0.129 5.129 24 C 0.179 3.821 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.160 4.160 28 N -0.291 5.291 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.403 0.597 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.066 0.934 49 H 0.068 0.932 50 H 0.089 0.911 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.560 5.441 22.258 26.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.163 4.163 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 N -0.370 5.370 17 C 0.308 3.692 18 O -0.410 6.410 19 C -0.089 4.089 20 C -0.098 4.098 21 N -0.150 5.150 22 N -0.057 5.057 23 N -0.043 5.043 24 C 0.098 3.902 25 C -0.210 4.210 26 C -0.217 4.217 27 C -0.218 4.218 28 N -0.141 5.141 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.238 0.762 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.108 0.892 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.108 0.892 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.925 6.560 22.697 26.931 hybrid contribution 1.050 -0.975 -1.074 1.791 sum -11.875 5.585 21.623 25.293 Atomic orbital electron populations 1.22172 0.95404 1.02062 1.02420 1.21046 0.93619 0.97766 0.83738 0.89409 1.21852 0.96875 1.00812 0.96556 1.21732 0.93636 1.01437 0.99527 1.20652 0.86163 0.96456 0.94228 1.42383 1.00217 1.66276 1.28985 1.19247 0.89441 1.27107 1.01216 0.91215 1.24757 0.96470 1.01300 0.98659 1.69665 1.07181 1.47118 1.34324 0.86181 0.79369 0.78811 0.81792 1.21737 1.21770 1.20770 1.45998 1.67394 1.14219 1.09423 1.20095 0.77719 0.87266 0.84169 1.90730 1.49544 1.15912 1.84858 1.19878 1.06026 0.95543 0.87495 1.24566 0.86708 0.99513 0.99009 1.75773 1.25022 1.10711 1.03483 1.78867 0.96058 1.10643 1.20114 1.50427 1.09492 1.26948 1.17420 1.21393 0.89770 0.86378 0.92680 1.22084 1.01033 1.02045 0.95847 1.22234 0.95224 1.01557 1.02677 1.22243 1.03194 0.96816 0.99566 1.74588 1.27390 1.08396 1.03728 0.92423 0.92327 0.91583 0.90286 0.91313 0.91982 0.92019 0.96535 0.96540 0.78338 0.93540 0.76245 0.85646 0.85624 0.90679 0.89271 0.90615 0.90233 0.89160 0.91483 0.91333 0.89197 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.48 37.16 0.35 -1.30 16 2 C 0.14 1.63 2.57 -67.93 -0.17 1.45 16 3 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 4 C -0.12 -1.42 4.75 -26.73 -0.13 -1.55 16 5 C -0.13 -1.95 5.22 -26.73 -0.14 -2.09 16 6 C 0.15 3.04 6.26 -4.04 -0.03 3.01 16 7 N -0.73 -18.94 5.60 -59.91 -0.34 -19.28 16 8 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 9 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 10 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 11 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 12 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 16 N -0.72 -7.54 4.53 -53.81 -0.24 -7.78 16 17 C 0.52 6.59 7.79 -10.98 -0.09 6.51 16 18 O -0.53 -9.09 15.70 5.56 0.09 -9.00 16 19 C -0.05 -0.46 6.33 -29.03 -0.18 -0.65 16 20 C 0.19 2.46 6.86 -156.62 -1.07 1.39 16 21 N -0.28 -4.03 12.50 32.45 0.41 -3.62 16 22 N -0.06 -0.86 12.24 60.35 0.74 -0.12 16 23 N -0.13 -1.52 3.73 0.48 0.00 -1.52 16 24 C 0.18 1.37 1.30 -131.82 -0.17 1.20 16 25 C -0.15 -0.85 7.91 37.16 0.29 -0.56 16 26 C -0.16 -0.95 8.66 37.16 0.32 -0.62 16 27 C -0.16 -1.15 8.67 37.16 0.32 -0.83 16 28 N -0.29 -3.89 11.83 32.47 0.38 -3.50 16 29 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.96 7.75 -51.93 -0.40 0.56 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.38 10.41 7.67 -40.82 -0.31 10.10 16 39 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.40 3.20 8.60 -40.82 -0.35 2.85 16 41 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 51 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 423.78 15.07 6.39 6.39 Total: -1.00 -37.43 423.78 -6.85 -44.28 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -9.04 Total: 6.03 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -0.94 Total: -1.53 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: 1.68 Total: -63.71 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -37.43 -6.85 -44.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571262304.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.597 kcal (2) G-P(sol) polarization free energy of solvation -37.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds