Wall clock time and date at job start Tue Mar 31 2020 21:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99618 * 2 1 4 4 H 1.48497 * 109.46966 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47031 * 299.99506 * 3 2 1 6 6 H 1.48495 * 109.47550 * 59.99515 * 3 2 1 7 7 C 1.37875 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00259 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46831 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46831 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.47008 * 55.00261 * 12 11 10 14 14 N 1.46900 * 109.47277 * 295.00207 * 12 11 10 15 15 C 1.50693 * 109.47124 * 175.00194 * 12 11 10 16 16 O 1.21283 * 120.00230 * 99.99986 * 15 12 11 17 17 N 1.34780 * 120.00110 * 280.00090 * 15 12 11 18 18 C 1.46501 * 120.00401 * 180.02562 * 17 15 12 19 19 C 1.52995 * 109.47379 * 180.02562 * 18 17 15 20 20 H 1.09000 * 110.54223 * 307.86096 * 19 18 17 21 21 C 1.55010 * 110.61267 * 184.99993 * 19 18 17 22 22 C 1.54865 * 102.10313 * 204.60087 * 21 19 18 23 23 C 1.53898 * 104.09945 * 20.83851 * 22 21 19 24 24 C 1.52759 * 109.70768 * 121.44474 * 23 22 21 25 25 C 1.53045 * 109.48363 * 180.12436 * 24 23 22 26 26 C 1.52996 * 109.45383 * 300.46670 * 25 24 23 27 27 C 1.53004 * 109.52538 * 60.24647 * 26 25 24 28 28 C 1.52775 * 109.66896 * 242.57759 * 23 22 21 29 29 O 1.43519 * 107.53037 * 1.98518 * 23 22 21 30 30 H 0.96996 * 119.99913 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47111 * 59.99777 * 9 7 2 32 32 H 1.09001 * 109.46517 * 300.00094 * 9 7 2 33 33 H 1.09006 * 109.46726 * 59.99467 * 10 9 7 34 34 H 1.08995 * 109.46988 * 300.00198 * 10 9 7 35 35 H 1.08998 * 109.46958 * 60.00257 * 11 10 9 36 36 H 1.08994 * 109.47085 * 299.99996 * 11 10 9 37 37 H 1.00893 * 111.00157 * 176.04120 * 14 12 11 38 38 H 1.00897 * 111.00321 * 300.00350 * 14 12 11 39 39 H 0.96996 * 119.99570 * 359.97438 * 17 15 12 40 40 H 1.08996 * 109.46850 * 59.99504 * 18 17 15 41 41 H 1.08999 * 109.46798 * 300.00428 * 18 17 15 42 42 H 1.09000 * 110.90843 * 86.39403 * 21 19 18 43 43 H 1.09000 * 110.93392 * 322.81127 * 21 19 18 44 44 H 1.09000 * 110.49923 * 262.18225 * 22 21 19 45 45 H 1.08999 * 110.50347 * 139.49134 * 22 21 19 46 46 H 1.09002 * 109.46930 * 60.11537 * 24 23 22 47 47 H 1.09007 * 109.47125 * 300.12324 * 24 23 22 48 48 H 1.08999 * 109.47430 * 180.47488 * 25 24 23 49 49 H 1.08995 * 109.47580 * 60.46209 * 25 24 23 50 50 H 1.08991 * 109.46449 * 180.26318 * 26 25 24 51 51 H 1.09003 * 109.46468 * 300.23162 * 26 25 24 52 52 H 1.08998 * 109.47029 * 59.73426 * 27 26 25 53 53 H 1.09002 * 109.47587 * 179.74946 * 27 26 25 54 54 H 1.09002 * 109.46950 * 299.84065 * 28 23 22 55 55 H 1.08996 * 109.47368 * 59.83935 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0005 13 1 3.1594 -6.0430 0.8419 14 7 3.2369 -6.1419 -1.2552 15 6 1.7254 -7.4515 0.1249 16 8 1.5125 -8.1253 -0.8608 17 7 1.2920 -7.8669 1.3316 18 6 0.5641 -9.1325 1.4527 19 6 0.1883 -9.3667 2.9172 20 1 1.0660 -9.2742 3.5568 21 6 -0.4727 -10.7574 3.0954 22 6 -1.3182 -10.5533 4.3767 23 6 -1.4892 -9.0270 4.4739 24 6 -2.9754 -8.6737 4.4681 25 6 -3.1394 -7.1549 4.5618 26 6 -2.4906 -6.6510 5.8525 27 6 -1.0004 -6.9980 5.8450 28 6 -0.8314 -8.5164 5.7547 29 8 -0.8452 -8.4461 3.3304 30 1 -0.4850 0.8400 -0.0004 31 1 0.6248 -2.5571 -0.8896 32 1 0.6241 -2.5566 0.8903 33 1 2.8721 -3.6042 0.8905 34 1 2.8720 -3.6043 -0.8894 35 1 0.8535 -5.0451 -0.8886 36 1 0.8541 -5.0445 0.8913 37 1 3.9446 -6.8609 -1.2533 38 1 2.6242 -6.2397 -2.0508 39 1 1.4626 -7.3282 2.1200 40 1 1.1956 -9.9496 1.1042 41 1 -0.3417 -9.0900 0.8479 42 1 0.2812 -11.5300 3.2458 43 1 -1.1091 -10.9981 2.2438 44 1 -0.7874 -10.9345 5.2490 45 1 -2.2881 -11.0405 4.2757 46 1 -3.4643 -9.1452 5.3205 47 1 -3.4304 -9.0318 3.5445 48 1 -4.2000 -6.9035 4.5661 49 1 -2.6577 -6.6838 3.7050 50 1 -2.6114 -5.5700 5.9216 51 1 -2.9696 -7.1254 6.7090 52 1 -0.5221 -6.5273 4.9861 53 1 -0.5381 -6.6347 6.7628 54 1 -1.3031 -8.9864 6.6177 55 1 0.2301 -8.7635 5.7415 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580050502.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:55 Heat of formation + Delta-G solvation = -151.649387 kcal Electronic energy + Delta-G solvation = -30441.947969 eV Core-core repulsion = 26475.554272 eV Total energy + Delta-G solvation = -3966.393696 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.53765 -40.89741 -37.82739 -37.12999 -35.72633 -35.23206 -33.21718 -33.12468 -31.92346 -31.68723 -29.70100 -28.60589 -26.57127 -24.81498 -23.74485 -23.64681 -22.41826 -21.91068 -21.71268 -21.10077 -20.30026 -18.45384 -18.30844 -17.73037 -17.43865 -16.82498 -16.70288 -16.46741 -16.16713 -15.72046 -15.60546 -15.48412 -15.05980 -14.88830 -14.68982 -14.52236 -14.28752 -14.08035 -13.92733 -13.64024 -13.41278 -13.11988 -13.09333 -13.00398 -12.85260 -12.66606 -12.51947 -12.46585 -12.34889 -12.24069 -12.14542 -12.03711 -11.77961 -11.52725 -11.41094 -11.39269 -11.26387 -11.21767 -10.95483 -10.89987 -10.52810 -10.37663 -10.17748 -9.69588 -8.16980 -6.27731 1.40846 1.41648 1.47936 1.55399 2.14659 2.43464 2.76712 3.15914 3.51073 3.51813 3.68398 3.76147 3.79923 3.89992 3.95771 3.99464 4.05575 4.15766 4.17173 4.27490 4.33567 4.42717 4.50528 4.52649 4.56227 4.60362 4.63035 4.68460 4.74663 4.82443 4.91661 4.93016 4.94305 4.95212 5.09384 5.11880 5.12642 5.17972 5.26104 5.29691 5.30402 5.33913 5.36826 5.37261 5.45502 5.57605 5.60548 5.83592 5.93202 6.03120 6.12210 6.30123 6.41403 6.50826 6.90198 7.11494 7.41371 8.95166 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009684 B = 0.002674 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.640771 B =10468.786611 C =12754.521458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.965 3.035 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.022 3.978 10 C -0.082 4.082 11 C -0.093 4.093 12 C 0.088 3.912 13 H 0.123 0.877 14 N -0.817 5.817 15 C 0.484 3.516 16 O -0.585 6.585 17 N -0.713 5.713 18 C 0.127 3.873 19 C 0.066 3.934 20 H 0.089 0.911 21 C -0.142 4.142 22 C -0.141 4.141 23 C 0.100 3.900 24 C -0.106 4.106 25 C -0.120 4.120 26 C -0.118 4.118 27 C -0.119 4.119 28 C -0.123 4.123 29 O -0.377 6.377 30 H 0.262 0.738 31 H -0.017 1.017 32 H -0.010 1.010 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.067 0.933 37 H 0.350 0.650 38 H 0.345 0.655 39 H 0.413 0.587 40 H 0.087 0.913 41 H 0.052 0.948 42 H 0.102 0.898 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.041 0.959 50 H 0.051 0.949 51 H 0.074 0.926 52 H 0.047 0.953 53 H 0.066 0.934 54 H 0.086 0.914 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.450 -26.785 15.125 30.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.576 4.576 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.120 4.120 11 C -0.132 4.132 12 C -0.028 4.028 13 H 0.141 0.859 14 N -0.346 5.346 15 C 0.270 3.730 16 O -0.465 6.465 17 N -0.364 5.364 18 C 0.003 3.997 19 C 0.008 3.992 20 H 0.107 0.893 21 C -0.180 4.180 22 C -0.179 4.179 23 C 0.061 3.939 24 C -0.144 4.144 25 C -0.158 4.158 26 C -0.155 4.155 27 C -0.156 4.156 28 C -0.161 4.161 29 O -0.297 6.297 30 H 0.071 0.929 31 H 0.001 0.999 32 H 0.008 0.992 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.250 0.750 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.120 0.880 43 H 0.093 0.907 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.060 0.940 50 H 0.070 0.930 51 H 0.093 0.907 52 H 0.066 0.934 53 H 0.085 0.915 54 H 0.104 0.896 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.567 -26.222 14.544 30.026 hybrid contribution -0.454 0.347 -0.111 0.582 sum -2.021 -25.875 14.433 29.697 Atomic orbital electron populations 1.70122 1.07863 1.27568 1.52119 1.26017 0.95769 1.03453 0.94894 0.85396 0.79175 0.78745 0.77721 1.18424 1.20553 1.20272 1.21756 0.93588 0.92378 1.49866 0.92098 1.19051 0.94558 0.93621 0.94294 1.21275 0.97489 0.91954 1.01291 1.21437 0.96732 0.93619 1.01391 1.21592 0.95396 0.89591 0.96189 0.85915 1.59034 1.17573 1.54922 1.03094 1.22418 0.79066 0.88628 0.82919 1.90652 1.59176 1.58438 1.38263 1.46025 1.56629 1.23871 1.09902 1.21429 0.96106 0.86352 0.95812 1.23405 0.92383 0.89831 0.93568 0.89280 1.23092 1.00043 0.96248 0.98653 1.23010 1.01855 0.94302 0.98695 1.22067 0.92994 0.92622 0.86231 1.21655 0.94053 0.96058 1.02614 1.21468 1.00238 0.96228 0.97846 1.21516 0.95912 1.00390 0.97725 1.21460 0.96328 0.96438 1.01396 1.21956 1.01112 0.95828 0.97164 1.88981 1.49200 1.44471 1.47047 0.92906 0.99902 0.99200 0.92564 0.92361 0.93794 0.91474 0.83656 0.84141 0.75048 0.89529 0.92967 0.87984 0.90698 0.88752 0.89505 0.89067 0.92162 0.91926 0.93980 0.93001 0.90745 0.93397 0.91537 0.89575 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.77 13.29 21.45 0.28 -58.48 16 2 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 3 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.54 -31.62 9.11 25.60 0.23 -31.39 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.08 -3.47 5.04 30.59 0.15 -3.31 16 11 C -0.09 -3.25 4.84 30.59 0.15 -3.11 16 12 C 0.09 2.41 3.15 44.17 0.14 2.55 16 13 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 14 N -0.82 -22.47 8.44 -171.80 -1.45 -23.92 16 15 C 0.48 13.39 7.07 87.65 0.62 14.01 16 16 O -0.58 -19.91 16.25 -3.04 -0.05 -19.96 16 17 N -0.71 -15.59 5.56 -463.07 -2.57 -18.17 16 18 C 0.13 2.46 5.42 86.38 0.47 2.93 16 19 C 0.07 0.96 3.31 31.28 0.10 1.07 16 20 H 0.09 1.07 8.12 -2.39 -0.02 1.05 16 21 C -0.14 -1.47 6.59 31.92 0.21 -1.26 16 22 C -0.14 -1.32 6.26 31.53 0.20 -1.12 16 23 C 0.10 1.42 0.71 -10.65 -0.01 1.41 16 24 C -0.11 -1.60 4.72 30.53 0.14 -1.46 16 25 C -0.12 -2.29 5.80 30.61 0.18 -2.11 16 26 C -0.12 -2.02 5.91 30.59 0.18 -1.84 16 27 C -0.12 -2.01 5.80 30.61 0.18 -1.83 16 28 C -0.12 -1.56 4.65 30.53 0.14 -1.42 16 29 O -0.38 -7.38 9.42 -148.98 -1.40 -8.78 16 30 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 31 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 32 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 33 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.06 2.51 7.75 -2.39 -0.02 2.49 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.35 8.07 9.06 -89.70 -0.81 7.25 16 38 H 0.35 10.19 8.58 -89.70 -0.77 9.43 16 39 H 0.41 7.73 8.47 -92.71 -0.79 6.95 16 40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 0.88 8.06 -2.39 -0.02 0.86 16 44 H 0.09 0.59 7.68 -2.39 -0.02 0.57 16 45 H 0.09 0.71 7.69 -2.39 -0.02 0.69 16 46 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 48 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.04 1.05 7.76 -2.39 -0.02 1.03 16 50 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.05 1.04 7.76 -2.39 -0.02 1.02 16 53 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 54 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 55 H 0.07 0.80 8.11 -2.39 -0.02 0.78 16 Total: -1.00 -73.67 427.98 -0.97 -74.64 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -1.50 Total: 32.52 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 3.70 Total: -25.32 kcal Atomic # 7 Polarization: -96.83 SS G_CDS: -3.74 Total: -100.56 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -1.45 Total: -28.74 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.67 -0.97 -74.64 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050502.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.010 kcal (2) G-P(sol) polarization free energy of solvation -73.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds