Wall clock time and date at job start Tue Mar 31 2020 20:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00134 * 2 1 4 4 C 1.52997 * 109.47242 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47144 * 66.27070 * 4 3 2 6 6 C 1.46898 * 110.99971 * 158.03162 * 5 4 3 7 7 C 1.50703 * 109.46938 * 288.15646 * 6 5 4 8 8 H 1.07997 * 120.00150 * 354.90568 * 7 6 5 9 9 C 1.37878 * 119.99645 * 174.90999 * 7 6 5 10 10 N 1.31513 * 120.00460 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99725 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47389 * 60.00133 * 11 9 7 13 13 H 1.48500 * 109.47344 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47335 * 300.00203 * 11 9 7 15 15 C 1.38582 * 110.99900 * 281.98319 * 5 4 3 16 16 N 1.31224 * 126.47196 * 0.02804 * 15 5 4 17 17 N 1.28526 * 109.85595 * 179.97438 * 16 15 5 18 18 C 1.30299 * 110.05704 * 359.71354 * 17 16 15 19 19 C 1.50701 * 126.34939 * 180.31451 * 18 17 16 20 20 C 1.52999 * 109.46923 * 270.15635 * 19 18 17 21 21 C 1.53005 * 109.47130 * 179.97438 * 20 19 18 22 22 H 1.09003 * 109.86550 * 53.99334 * 21 20 19 23 23 C 1.54093 * 109.88049 * 174.99947 * 21 20 19 24 24 C 1.54806 * 104.18765 * 121.45516 * 23 21 20 25 25 C 1.54993 * 102.09348 * 20.88083 * 24 23 21 26 26 O 1.43745 * 109.87894 * 292.83520 * 21 20 19 27 27 N 1.36450 * 126.47417 * 179.97438 * 15 5 4 28 28 C 1.46506 * 127.13470 * 0.02562 * 27 15 5 29 29 H 1.08999 * 109.47093 * 299.99718 * 1 2 3 30 30 H 1.09003 * 109.46968 * 59.99619 * 1 2 3 31 31 H 1.09000 * 109.46980 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46427 * 60.00449 * 3 2 1 33 33 H 1.08999 * 109.46923 * 300.00551 * 3 2 1 34 34 H 1.09003 * 109.47347 * 306.27063 * 4 3 2 35 35 H 1.09001 * 109.47093 * 186.27228 * 4 3 2 36 36 H 1.08999 * 109.47418 * 48.15454 * 6 5 4 37 37 H 1.09000 * 109.46912 * 168.15919 * 6 5 4 38 38 H 0.96995 * 119.99987 * 180.02562 * 10 9 7 39 39 H 1.08994 * 109.47002 * 30.15474 * 19 18 17 40 40 H 1.08997 * 109.46737 * 150.15608 * 19 18 17 41 41 H 1.08994 * 109.47150 * 299.99748 * 20 19 18 42 42 H 1.08997 * 109.47436 * 60.00401 * 20 19 18 43 43 H 1.09007 * 110.48829 * 240.12990 * 23 21 20 44 44 H 1.08997 * 110.49000 * 2.64316 * 23 21 20 45 45 H 1.09001 * 110.90891 * 139.08005 * 24 23 21 46 46 H 1.08997 * 110.90679 * 262.64740 * 24 23 21 47 47 H 1.09002 * 110.62109 * 81.47496 * 25 24 23 48 48 H 1.08999 * 110.62152 * 204.47464 * 25 24 23 49 49 H 1.09001 * 109.46786 * 89.99869 * 28 27 15 50 50 H 1.09000 * 109.47079 * 330.00137 * 28 27 15 51 51 H 1.09003 * 109.47073 * 210.00047 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9791 0.5906 -1.2689 6 6 5.3840 0.9213 -1.5421 7 6 5.4940 2.3772 -1.9153 8 1 4.6015 2.9750 -2.0268 9 6 6.7341 2.9460 -2.1145 10 7 7.8209 2.2180 -1.9794 11 14 6.8703 4.7505 -2.5779 12 1 6.2611 5.5832 -1.5099 13 1 8.3014 5.1147 -2.7344 14 1 6.1567 4.9881 -3.8584 15 6 3.7824 -0.7812 -1.2703 16 7 3.2725 -1.4971 -0.2960 17 7 3.2363 -2.7357 -0.6372 18 6 3.7114 -2.8816 -1.8416 19 6 3.8330 -4.1763 -2.6032 20 6 5.1937 -4.8128 -2.3129 21 6 5.3170 -6.1276 -3.0856 22 1 5.1236 -5.9546 -4.1443 23 6 6.7298 -6.7140 -2.8999 24 6 6.4825 -8.1099 -2.2780 25 6 5.0096 -8.3856 -2.6742 26 8 4.3834 -7.0892 -2.5660 27 7 4.0816 -1.6424 -2.2855 28 6 4.6713 -1.3079 -3.5843 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8500 0.5498 0.8277 35 1 3.9784 2.1743 0.1116 36 1 5.9825 0.7283 -0.6518 37 1 5.7485 0.3067 -2.3652 38 1 8.6933 2.6183 -2.1192 39 1 3.0400 -4.8564 -2.2924 40 1 3.7445 -3.9790 -3.6715 41 1 5.9866 -4.1326 -2.6238 42 1 5.2821 -5.0100 -1.2446 43 1 7.2330 -6.8089 -3.8622 44 1 7.3156 -6.0912 -2.2239 45 1 7.1486 -8.8540 -2.7147 46 1 6.5949 -8.0783 -1.1943 47 1 4.9503 -8.7563 -3.6975 48 1 4.5517 -9.0921 -1.9818 49 1 5.7578 -1.3605 -3.5142 50 1 4.3741 -0.2986 -3.8692 51 1 4.3209 -2.0156 -4.3356 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646683412.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:03 Heat of formation + Delta-G solvation = 0.600500 kcal Electronic energy + Delta-G solvation = -30680.156896 eV Core-core repulsion = 26616.824907 eV Total energy + Delta-G solvation = -4063.331989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.18516 -39.63430 -37.76146 -36.25029 -34.72171 -33.69962 -32.76735 -32.26371 -30.02061 -29.31764 -27.89663 -26.92168 -26.19558 -25.58454 -23.98904 -22.53659 -22.14929 -21.99962 -21.03090 -19.92540 -19.69249 -16.92196 -16.64459 -16.27913 -16.17880 -15.77950 -15.70200 -15.53929 -15.40431 -14.92387 -14.68834 -14.26267 -14.03145 -13.82534 -13.47191 -13.41677 -13.18410 -12.90094 -12.63594 -12.50869 -12.16182 -12.02237 -11.86398 -11.61277 -11.53486 -11.42812 -11.13852 -11.06105 -10.99511 -10.90984 -10.87698 -10.76006 -10.61543 -10.36968 -10.14467 -9.85932 -9.82382 -9.49092 -9.38018 -9.08484 -8.83420 -8.57391 -7.19788 -6.23018 -4.27238 2.53804 2.98462 3.22065 3.27262 3.29409 3.68599 3.69437 4.25310 4.34698 4.40396 4.48622 4.63586 4.69415 4.75420 4.92387 5.04103 5.08630 5.11927 5.15543 5.29269 5.43369 5.44747 5.48460 5.54317 5.56344 5.60641 5.64702 5.70282 5.73804 5.76431 5.77976 5.86201 5.88673 5.89418 5.94466 6.01242 6.11137 6.23861 6.35583 6.49765 6.60053 6.71266 6.77309 7.02160 7.04645 7.33469 7.62128 7.75774 7.81132 7.92055 8.32787 8.79643 9.38240 9.63788 10.87159 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010488 B = 0.003203 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.056035 B = 8740.490786 C =10924.879659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.350 6.350 3 C 0.064 3.936 4 C 0.077 3.923 5 N -0.451 5.451 6 C 0.191 3.809 7 C -0.518 4.518 8 H 0.068 0.932 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.902 3.098 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.384 3.616 16 N -0.304 5.304 17 N -0.286 5.286 18 C 0.143 3.857 19 C -0.016 4.016 20 C -0.112 4.112 21 C 0.078 3.922 22 H 0.069 0.931 23 C -0.154 4.154 24 C -0.156 4.156 25 C 0.046 3.954 26 O -0.369 6.369 27 N -0.485 5.485 28 C 0.082 3.918 29 H 0.031 0.969 30 H 0.028 0.972 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.010 0.990 37 H 0.035 0.965 38 H 0.265 0.735 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.058 0.942 48 H 0.091 0.909 49 H 0.077 0.923 50 H 0.096 0.904 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.840 -14.878 -4.013 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C -0.013 4.013 4 C -0.050 4.050 5 N -0.175 5.175 6 C 0.067 3.933 7 C -0.556 4.556 8 H 0.086 0.914 9 C -0.141 4.141 10 N -0.532 5.532 11 Si 0.730 3.270 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.028 3.972 16 N -0.149 5.149 17 N -0.126 5.126 18 C -0.124 4.124 19 C -0.056 4.056 20 C -0.151 4.151 21 C 0.021 3.979 22 H 0.087 0.913 23 C -0.191 4.191 24 C -0.194 4.194 25 C -0.031 4.031 26 O -0.288 6.288 27 N -0.182 5.182 28 C -0.062 4.062 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.028 0.972 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.076 0.924 48 H 0.109 0.891 49 H 0.096 0.904 50 H 0.115 0.885 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.593 -15.060 -2.986 16.340 hybrid contribution 1.232 1.388 -1.265 2.246 sum -4.361 -13.672 -4.251 14.967 Atomic orbital electron populations 1.22609 0.83629 1.01692 0.98595 1.88374 1.17129 1.26291 1.94996 1.22623 0.94030 0.85442 0.99251 1.22067 0.92963 1.01026 0.88989 1.58870 1.25253 1.00115 1.33236 1.20057 0.78427 0.97912 0.96887 1.21007 0.92733 0.94023 1.47856 0.91431 1.24972 0.95489 0.98513 0.95174 1.69938 0.97963 1.36418 1.48858 0.86490 0.77006 0.84353 0.79198 1.20015 1.21241 1.20065 1.22966 0.98556 0.90384 0.85326 1.74667 1.22534 0.96421 1.21253 1.73868 1.17805 1.11444 1.09456 1.24342 1.05647 0.87040 0.95378 1.19781 0.99032 0.89196 0.97608 1.21778 0.97078 0.94291 1.01922 1.22772 0.88042 0.89711 0.97405 0.91313 1.23012 0.97471 0.96698 1.01955 1.23127 0.97255 0.96971 1.01999 1.23526 0.92110 0.86748 1.00719 1.88933 1.39935 1.15694 1.84272 1.45904 1.49903 1.07179 1.15198 1.22015 0.99134 1.03463 0.81566 0.95084 0.95333 0.90575 0.93644 0.93362 0.92308 0.87517 0.97241 0.94681 0.92522 0.88365 0.90918 0.90697 0.90265 0.90672 0.90074 0.90434 0.90408 0.92388 0.89100 0.90448 0.88504 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.35 -6.73 7.40 -35.23 -0.26 -7.00 16 3 C 0.06 1.14 6.25 37.16 0.23 1.37 16 4 C 0.08 1.56 5.20 -3.82 -0.02 1.54 16 5 N -0.45 -9.96 4.43 -175.88 -0.78 -10.74 16 6 C 0.19 4.68 4.47 -4.98 -0.02 4.66 16 7 C -0.52 -13.37 8.28 -34.44 -0.29 -13.65 16 8 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.89 -24.74 13.29 55.43 0.74 -24.01 16 11 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 15 C 0.38 8.35 6.52 -318.87 -2.08 6.27 16 16 N -0.30 -6.87 8.53 30.32 0.26 -6.61 16 17 N -0.29 -6.10 12.18 32.99 0.40 -5.70 16 18 C 0.14 2.59 7.32 -154.02 -1.13 1.46 16 19 C -0.02 -0.22 5.50 -27.88 -0.15 -0.37 16 20 C -0.11 -1.35 4.68 -26.73 -0.13 -1.47 16 21 C 0.08 0.79 3.41 -26.16 -0.09 0.70 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 23 C -0.15 -1.29 6.64 -25.21 -0.17 -1.46 16 24 C -0.16 -1.17 7.15 -24.73 -0.18 -1.35 16 25 C 0.05 0.38 7.72 38.21 0.29 0.67 16 26 O -0.37 -4.24 10.84 -35.23 -0.38 -4.62 16 27 N -0.49 -9.16 3.19 -121.45 -0.39 -9.55 16 28 C 0.08 1.26 9.25 59.85 0.55 1.81 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 1.25 7.41 -51.93 -0.38 0.87 16 35 H 0.11 2.15 7.10 -51.93 -0.37 1.78 16 36 H 0.01 0.26 8.05 -51.93 -0.42 -0.16 16 37 H 0.04 0.87 5.13 -51.93 -0.27 0.61 16 38 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.10 1.35 7.91 -51.93 -0.41 0.94 16 40 H 0.07 0.81 7.26 -51.93 -0.38 0.44 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.72 7.70 -51.93 -0.40 0.32 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.08 1.19 7.61 -51.93 -0.40 0.80 16 50 H 0.10 1.63 7.81 -51.93 -0.41 1.22 16 51 H 0.08 0.90 7.24 -51.93 -0.38 0.53 16 LS Contribution 404.77 15.07 6.10 6.10 Total: -1.00 -32.20 404.77 -10.33 -42.53 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -8.84 Total: 1.10 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -2.15 Total: 3.28 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.23 Total: -56.61 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.64 Total: -11.62 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.20 -10.33 -42.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646683412.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.127 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds