Wall clock time and date at job start Tue Mar 31 2020 20:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00134 * 2 1 4 4 C 1.52997 * 109.47242 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47144 * 66.27070 * 4 3 2 6 6 C 1.46898 * 110.99971 * 158.03162 * 5 4 3 7 7 C 1.50703 * 109.46938 * 288.15646 * 6 5 4 8 8 H 1.07997 * 120.00150 * 354.90568 * 7 6 5 9 9 C 1.37878 * 119.99645 * 174.90999 * 7 6 5 10 10 N 1.31513 * 120.00460 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99725 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47389 * 60.00133 * 11 9 7 13 13 H 1.48500 * 109.47344 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47335 * 300.00203 * 11 9 7 15 15 C 1.38582 * 110.99900 * 281.98319 * 5 4 3 16 16 N 1.31224 * 126.47196 * 0.02804 * 15 5 4 17 17 N 1.28526 * 109.85595 * 179.97438 * 16 15 5 18 18 C 1.30299 * 110.05704 * 359.71354 * 17 16 15 19 19 C 1.50701 * 126.34939 * 180.31451 * 18 17 16 20 20 C 1.52999 * 109.46923 * 270.15635 * 19 18 17 21 21 C 1.53005 * 109.47130 * 179.97438 * 20 19 18 22 22 H 1.09003 * 109.86550 * 53.99334 * 21 20 19 23 23 C 1.54093 * 109.88049 * 174.99947 * 21 20 19 24 24 C 1.54806 * 104.18765 * 121.45516 * 23 21 20 25 25 C 1.54993 * 102.09348 * 20.88083 * 24 23 21 26 26 O 1.43745 * 109.87894 * 292.83520 * 21 20 19 27 27 N 1.36450 * 126.47417 * 179.97438 * 15 5 4 28 28 C 1.46506 * 127.13470 * 0.02562 * 27 15 5 29 29 H 1.08999 * 109.47093 * 299.99718 * 1 2 3 30 30 H 1.09003 * 109.46968 * 59.99619 * 1 2 3 31 31 H 1.09000 * 109.46980 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46427 * 60.00449 * 3 2 1 33 33 H 1.08999 * 109.46923 * 300.00551 * 3 2 1 34 34 H 1.09003 * 109.47347 * 306.27063 * 4 3 2 35 35 H 1.09001 * 109.47093 * 186.27228 * 4 3 2 36 36 H 1.08999 * 109.47418 * 48.15454 * 6 5 4 37 37 H 1.09000 * 109.46912 * 168.15919 * 6 5 4 38 38 H 0.96995 * 119.99987 * 180.02562 * 10 9 7 39 39 H 1.08994 * 109.47002 * 30.15474 * 19 18 17 40 40 H 1.08997 * 109.46737 * 150.15608 * 19 18 17 41 41 H 1.08994 * 109.47150 * 299.99748 * 20 19 18 42 42 H 1.08997 * 109.47436 * 60.00401 * 20 19 18 43 43 H 1.09007 * 110.48829 * 240.12990 * 23 21 20 44 44 H 1.08997 * 110.49000 * 2.64316 * 23 21 20 45 45 H 1.09001 * 110.90891 * 139.08005 * 24 23 21 46 46 H 1.08997 * 110.90679 * 262.64740 * 24 23 21 47 47 H 1.09002 * 110.62109 * 81.47496 * 25 24 23 48 48 H 1.08999 * 110.62152 * 204.47464 * 25 24 23 49 49 H 1.09001 * 109.46786 * 89.99869 * 28 27 15 50 50 H 1.09000 * 109.47079 * 330.00137 * 28 27 15 51 51 H 1.09003 * 109.47073 * 210.00047 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9791 0.5906 -1.2689 6 6 5.3840 0.9213 -1.5421 7 6 5.4940 2.3772 -1.9153 8 1 4.6015 2.9750 -2.0268 9 6 6.7341 2.9460 -2.1145 10 7 7.8209 2.2180 -1.9794 11 14 6.8703 4.7505 -2.5779 12 1 6.2611 5.5832 -1.5099 13 1 8.3014 5.1147 -2.7344 14 1 6.1567 4.9881 -3.8584 15 6 3.7824 -0.7812 -1.2703 16 7 3.2725 -1.4971 -0.2960 17 7 3.2363 -2.7357 -0.6372 18 6 3.7114 -2.8816 -1.8416 19 6 3.8330 -4.1763 -2.6032 20 6 5.1937 -4.8128 -2.3129 21 6 5.3170 -6.1276 -3.0856 22 1 5.1236 -5.9546 -4.1443 23 6 6.7298 -6.7140 -2.8999 24 6 6.4825 -8.1099 -2.2780 25 6 5.0096 -8.3856 -2.6742 26 8 4.3834 -7.0892 -2.5660 27 7 4.0816 -1.6424 -2.2855 28 6 4.6713 -1.3079 -3.5843 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8500 0.5498 0.8277 35 1 3.9784 2.1743 0.1116 36 1 5.9825 0.7283 -0.6518 37 1 5.7485 0.3067 -2.3652 38 1 8.6933 2.6183 -2.1192 39 1 3.0400 -4.8564 -2.2924 40 1 3.7445 -3.9790 -3.6715 41 1 5.9866 -4.1326 -2.6238 42 1 5.2821 -5.0100 -1.2446 43 1 7.2330 -6.8089 -3.8622 44 1 7.3156 -6.0912 -2.2239 45 1 7.1486 -8.8540 -2.7147 46 1 6.5949 -8.0783 -1.1943 47 1 4.9503 -8.7563 -3.6975 48 1 4.5517 -9.0921 -1.9818 49 1 5.7578 -1.3605 -3.5142 50 1 4.3741 -0.2986 -3.8692 51 1 4.3209 -2.0156 -4.3356 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646683412.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:02 Heat of formation + Delta-G solvation = -17.701522 kcal Electronic energy + Delta-G solvation = -30680.950531 eV Core-core repulsion = 26616.824907 eV Total energy + Delta-G solvation = -4064.125625 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.75153 -40.37539 -39.30019 -37.81468 -36.06055 -34.98994 -34.67120 -32.97072 -31.27207 -30.91656 -29.30842 -28.18571 -27.77555 -26.97033 -25.06021 -24.16565 -23.83434 -22.78083 -21.80240 -21.42243 -21.19543 -18.77102 -17.96855 -17.44145 -17.34575 -17.08921 -16.99961 -16.68966 -16.60658 -16.41102 -16.21506 -15.74270 -15.40369 -14.92576 -14.58388 -14.47400 -14.45110 -14.33254 -14.08807 -13.80493 -13.57595 -13.24106 -12.95603 -12.91430 -12.82129 -12.63312 -12.58286 -12.38714 -12.29928 -12.27737 -12.12093 -11.93855 -11.81709 -11.77391 -11.60515 -11.49666 -11.19237 -10.90054 -10.65681 -10.58173 -10.52436 -10.33585 -8.89812 -8.25143 -6.36617 1.00157 1.44836 1.46376 1.51855 1.55250 2.07648 2.39023 2.98146 2.98986 3.06555 3.11503 3.42086 3.71053 3.81235 3.90412 3.98827 4.06538 4.11586 4.16211 4.24689 4.30989 4.33893 4.38922 4.40797 4.46297 4.54185 4.56140 4.61338 4.65387 4.72227 4.75680 4.78026 4.86179 4.86881 4.90829 4.94441 4.98999 5.04895 5.06445 5.09249 5.19140 5.22593 5.27488 5.29842 5.59911 5.83173 5.95901 6.01546 6.06211 6.47749 6.58257 6.75780 7.33359 8.03866 8.85541 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010488 B = 0.003203 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.056035 B = 8740.490786 C =10924.879659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.073 3.927 4 C 0.077 3.923 5 N -0.449 5.449 6 C 0.209 3.791 7 C -0.526 4.526 8 H 0.070 0.930 9 C 0.014 3.986 10 N -0.928 5.928 11 Si 0.969 3.031 12 H -0.268 1.268 13 H -0.286 1.286 14 H -0.266 1.266 15 C 0.359 3.641 16 N -0.322 5.322 17 N -0.327 5.327 18 C 0.165 3.835 19 C -0.012 4.012 20 C -0.105 4.105 21 C 0.081 3.919 22 H 0.088 0.912 23 C -0.154 4.154 24 C -0.154 4.154 25 C 0.040 3.960 26 O -0.397 6.397 27 N -0.487 5.487 28 C 0.079 3.921 29 H 0.052 0.948 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.039 0.961 35 H 0.103 0.897 36 H -0.032 1.032 37 H 0.030 0.970 38 H 0.267 0.733 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.097 0.903 49 H 0.075 0.925 50 H 0.082 0.918 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.372 -15.259 -6.004 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.300 6.300 3 C -0.004 4.004 4 C -0.050 4.050 5 N -0.173 5.173 6 C 0.084 3.916 7 C -0.564 4.564 8 H 0.088 0.912 9 C -0.186 4.186 10 N -0.567 5.567 11 Si 0.794 3.206 12 H -0.193 1.193 13 H -0.211 1.211 14 H -0.191 1.191 15 C 0.002 3.998 16 N -0.166 5.166 17 N -0.166 5.166 18 C -0.103 4.103 19 C -0.052 4.052 20 C -0.144 4.144 21 C 0.023 3.977 22 H 0.106 0.894 23 C -0.192 4.192 24 C -0.191 4.191 25 C -0.036 4.036 26 O -0.317 6.317 27 N -0.183 5.183 28 C -0.063 4.063 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.121 0.879 36 H -0.014 1.014 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.117 0.883 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.115 0.885 49 H 0.094 0.906 50 H 0.100 0.900 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.152 -15.458 -4.976 17.365 hybrid contribution 1.375 1.364 -0.625 2.036 sum -4.776 -14.094 -5.601 15.900 Atomic orbital electron populations 1.22740 0.81604 1.02248 1.00082 1.88331 1.19434 1.26959 1.95283 1.22527 0.91891 0.85395 1.00612 1.22088 0.95170 1.00049 0.87723 1.58900 1.23378 1.00858 1.34136 1.19716 0.79604 0.97600 0.94684 1.21234 0.92992 0.94552 1.47623 0.91161 1.25808 0.95018 1.02845 0.94904 1.70062 0.98483 1.38351 1.49845 0.85431 0.76964 0.78987 0.79247 1.19269 1.21136 1.19075 1.22998 0.99942 0.90454 0.86379 1.74572 1.22822 0.97085 1.22129 1.73812 1.20282 1.11073 1.11471 1.25217 1.02451 0.88104 0.94502 1.20011 0.99759 0.86659 0.98749 1.21700 0.96180 0.95735 1.00811 1.22795 0.88833 0.88362 0.97693 0.89408 1.23035 0.96500 0.96835 1.02840 1.23132 0.97376 0.97085 1.01541 1.23727 0.92243 0.85653 1.01978 1.88899 1.40981 1.17146 1.84687 1.46169 1.49441 1.06923 1.15741 1.22210 0.99006 1.04062 0.81015 0.92974 0.94331 0.90554 0.90883 0.93123 0.94260 0.87932 1.01377 0.95207 0.92441 0.88526 0.87658 0.90512 0.92808 0.88748 0.91064 0.88315 0.91399 0.90707 0.88493 0.90637 0.89970 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.38 -14.65 7.40 -148.98 -1.10 -15.76 16 3 C 0.07 2.57 6.25 71.98 0.45 3.02 16 4 C 0.08 3.22 5.20 86.30 0.45 3.67 16 5 N -0.45 -20.42 4.43 -710.35 -3.15 -23.57 16 6 C 0.21 10.63 4.47 85.56 0.38 11.01 16 7 C -0.53 -27.52 8.28 25.60 0.21 -27.31 16 8 H 0.07 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.01 0.73 5.46 84.66 0.46 1.19 16 10 N -0.93 -52.22 13.29 21.45 0.28 -51.94 16 11 Si 0.97 41.22 29.54 68.60 2.03 43.24 16 12 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 13 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 14 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 15 C 0.36 16.04 6.52 260.11 1.70 17.73 16 16 N -0.32 -15.00 8.53 -58.00 -0.49 -15.50 16 17 N -0.33 -14.25 12.18 -49.54 -0.60 -14.85 16 18 C 0.17 5.93 7.32 137.64 1.01 6.94 16 19 C -0.01 -0.31 5.50 29.85 0.16 -0.14 16 20 C -0.11 -2.44 4.68 30.60 0.14 -2.29 16 21 C 0.08 1.46 3.41 30.97 0.11 1.56 16 22 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 23 C -0.15 -2.30 6.64 31.58 0.21 -2.09 16 24 C -0.15 -2.04 7.15 31.89 0.23 -1.81 16 25 C 0.04 0.58 7.72 72.66 0.56 1.14 16 26 O -0.40 -8.53 10.84 -148.98 -1.61 -10.14 16 27 N -0.49 -18.35 3.19 -538.16 -1.72 -20.07 16 28 C 0.08 2.36 9.25 127.77 1.18 3.54 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.04 1.77 7.41 -2.39 -0.02 1.75 16 35 H 0.10 4.27 7.10 -2.39 -0.02 4.25 16 36 H -0.03 -1.84 8.05 -2.39 -0.02 -1.86 16 37 H 0.03 1.54 5.13 -2.39 -0.01 1.52 16 38 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 39 H 0.10 2.53 7.91 -2.39 -0.02 2.51 16 40 H 0.11 1.98 7.26 -2.39 -0.02 1.97 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 42 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.07 1.20 7.70 -2.39 -0.02 1.18 16 45 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.08 2.29 7.61 -2.39 -0.02 2.27 16 50 H 0.08 2.73 7.81 -2.39 -0.02 2.71 16 51 H 0.12 2.49 7.24 -2.39 -0.02 2.47 16 Total: -1.00 -71.73 404.77 3.03 -68.69 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.90 Total: 21.62 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 8.50 Total: 18.27 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -5.68 Total: -125.93 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -2.72 Total: -25.90 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -71.73 3.03 -68.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646683412.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.992 kcal (2) G-P(sol) polarization free energy of solvation -71.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds