Wall clock time and date at job start Tue Mar 31 2020 20:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99917 * 2 1 4 4 C 1.53000 * 109.47040 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47259 * 66.50853 * 4 3 2 6 6 C 1.46905 * 110.99881 * 286.87023 * 5 4 3 7 7 C 1.50703 * 109.47005 * 298.91302 * 6 5 4 8 8 H 1.08005 * 119.99627 * 4.57332 * 7 6 5 9 9 C 1.37875 * 120.00168 * 184.57129 * 7 6 5 10 10 N 1.31509 * 120.00187 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99963 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47214 * 89.99766 * 11 9 7 13 13 H 1.48492 * 109.47236 * 210.00308 * 11 9 7 14 14 H 1.48505 * 109.47071 * 330.00020 * 11 9 7 15 15 C 1.38573 * 111.00378 * 162.91227 * 5 4 3 16 16 N 1.31217 * 126.47369 * 0.04490 * 15 5 4 17 17 N 1.28526 * 109.86170 * 179.69011 * 16 15 5 18 18 C 1.30297 * 110.05281 * 0.45409 * 17 16 15 19 19 C 1.50702 * 126.34834 * 179.82175 * 18 17 16 20 20 C 1.53000 * 109.46935 * 269.68693 * 19 18 17 21 21 C 1.53002 * 109.47143 * 179.97438 * 20 19 18 22 22 H 1.09001 * 110.32907 * 307.25090 * 21 20 19 23 23 C 1.54479 * 110.37397 * 184.99952 * 21 20 19 24 24 C 1.54510 * 104.06286 * 217.18986 * 23 21 20 25 25 C 1.54479 * 104.06160 * 0.02562 * 24 23 21 26 26 O 1.44420 * 104.80511 * 23.97575 * 25 24 23 27 27 N 1.36453 * 126.47585 * 179.97438 * 15 5 4 28 28 C 1.46506 * 127.13322 * 0.06288 * 27 15 5 29 29 H 1.09004 * 109.46867 * 300.00200 * 1 2 3 30 30 H 1.08999 * 109.47282 * 59.99720 * 1 2 3 31 31 H 1.09002 * 109.47136 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47605 * 60.00046 * 3 2 1 33 33 H 1.09004 * 109.47196 * 299.99892 * 3 2 1 34 34 H 1.09000 * 109.47410 * 306.50993 * 4 3 2 35 35 H 1.08999 * 109.47419 * 186.50344 * 4 3 2 36 36 H 1.08998 * 109.47022 * 58.91294 * 6 5 4 37 37 H 1.09000 * 109.47348 * 178.91161 * 6 5 4 38 38 H 0.96998 * 119.99998 * 180.02562 * 10 9 7 39 39 H 1.08991 * 109.47263 * 149.68456 * 19 18 17 40 40 H 1.09005 * 109.46904 * 29.68553 * 19 18 17 41 41 H 1.08996 * 109.46990 * 299.99636 * 20 19 18 42 42 H 1.09001 * 109.47008 * 60.00212 * 20 19 18 43 43 H 1.09003 * 110.50796 * 335.83767 * 23 21 20 44 44 H 1.09000 * 110.50898 * 98.54737 * 23 21 20 45 45 H 1.08993 * 110.50783 * 118.64209 * 24 23 21 46 46 H 1.08997 * 110.51039 * 241.21745 * 24 23 21 47 47 H 1.08997 * 110.37599 * 142.81332 * 25 24 23 48 48 H 1.09001 * 110.37001 * 265.03679 * 25 24 23 49 49 H 1.08999 * 109.46756 * 269.99122 * 28 27 15 50 50 H 1.08998 * 109.47464 * 29.99905 * 28 27 15 51 51 H 1.09005 * 109.46881 * 149.99468 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9806 0.5954 -1.2693 6 6 3.6666 -0.8388 -1.3229 7 6 4.3848 -1.5522 -0.2064 8 1 4.9519 -0.9873 0.5186 9 6 4.3177 -2.9260 -0.1106 10 7 4.9440 -3.5486 0.8639 11 14 3.3361 -3.9029 -1.3643 12 1 4.2157 -4.2735 -2.5018 13 1 2.8058 -5.1347 -0.7268 14 1 2.2063 -3.0769 -1.8609 15 6 5.3337 0.8154 -1.4717 16 7 6.1486 1.4563 -0.6674 17 7 7.3340 1.4663 -1.1640 18 6 7.3436 0.8459 -2.3097 19 6 8.5379 0.6448 -3.2066 20 6 8.6401 1.8131 -4.1893 21 6 9.8530 1.6093 -5.0994 22 1 10.7486 1.4338 -4.5033 23 6 10.0495 2.8368 -6.0165 24 6 10.5173 2.2315 -7.3589 25 6 10.5475 0.7099 -7.0942 26 8 9.6229 0.5066 -6.0036 27 7 6.0706 0.4055 -2.5445 28 6 5.5960 -0.3492 -3.7070 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8491 0.5466 0.8269 35 1 3.9783 2.1738 0.1170 36 1 2.5915 -0.9797 -1.2118 37 1 3.9894 -1.2458 -2.2811 38 1 4.8971 -4.5151 0.9310 39 1 8.4236 -0.2869 -3.7604 40 1 9.4432 0.5989 -2.6012 41 1 7.7349 1.8589 -4.7946 42 1 8.7545 2.7449 -3.6353 43 1 9.1084 3.3714 -6.1458 44 1 10.8134 3.4993 -5.6094 45 1 9.8076 2.4669 -8.1518 46 1 11.5115 2.5966 -7.6166 47 1 10.2174 0.1643 -7.9782 48 1 11.5506 0.3945 -6.8073 49 1 5.6933 -1.4171 -3.5113 50 1 4.5498 -0.1079 -3.8946 51 1 6.1922 -0.0841 -4.5803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646683413.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:06 Heat of formation + Delta-G solvation = -0.529014 kcal Electronic energy + Delta-G solvation = -30802.762295 eV Core-core repulsion = 26739.381326 eV Total energy + Delta-G solvation = -4063.380969 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.21707 -39.64771 -38.04252 -36.27862 -34.76019 -33.73842 -32.45127 -32.29558 -30.15809 -29.35665 -28.13731 -26.98124 -26.42724 -25.59281 -24.13420 -22.60196 -21.86649 -21.79326 -21.11977 -19.89433 -19.63385 -17.21141 -16.71149 -16.52097 -16.15400 -15.96891 -15.81436 -15.74151 -15.42370 -14.87420 -14.56172 -14.18551 -14.01708 -13.89946 -13.78387 -13.43280 -13.19506 -12.76452 -12.64377 -12.39228 -12.04872 -12.03367 -11.96042 -11.77365 -11.65050 -11.42419 -11.22639 -11.18679 -11.03971 -10.94129 -10.88099 -10.80349 -10.69278 -10.33173 -10.09823 -9.96477 -9.66954 -9.55420 -9.37825 -9.14973 -8.75523 -8.55418 -7.27153 -6.07401 -4.06515 2.51187 3.00260 3.22070 3.32001 3.34752 3.62556 3.67505 4.27636 4.30096 4.38072 4.41434 4.63030 4.65626 4.72584 4.91163 4.98299 5.04682 5.13158 5.25878 5.27192 5.34914 5.44081 5.48563 5.51359 5.53143 5.53937 5.59558 5.67402 5.70841 5.71672 5.75933 5.79435 5.80970 5.83743 5.85436 5.96449 6.00769 6.13862 6.18502 6.47617 6.63195 6.66364 6.75849 6.85264 7.14275 7.31486 7.41887 7.66202 7.75192 8.10296 8.42590 8.96688 9.51635 9.56624 11.05834 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.003064 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.496878 B = 9137.431788 C = 9994.930627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.070 3.930 4 C 0.071 3.929 5 N -0.453 5.453 6 C 0.146 3.854 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.078 3.922 10 N -0.894 5.894 11 Si 0.870 3.130 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.261 1.261 15 C 0.411 3.589 16 N -0.342 5.342 17 N -0.285 5.285 18 C 0.153 3.847 19 C -0.021 4.021 20 C -0.106 4.106 21 C 0.075 3.925 22 H 0.074 0.926 23 C -0.151 4.151 24 C -0.156 4.156 25 C 0.044 3.956 26 O -0.370 6.370 27 N -0.478 5.478 28 C 0.081 3.919 29 H 0.034 0.966 30 H 0.033 0.967 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.020 0.980 38 H 0.263 0.737 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.089 0.911 48 H 0.058 0.942 49 H 0.079 0.921 50 H 0.088 0.912 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.873 10.940 -15.730 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.281 6.281 3 C -0.008 4.008 4 C -0.056 4.056 5 N -0.176 5.176 6 C 0.021 3.979 7 C -0.579 4.579 8 H 0.096 0.904 9 C -0.125 4.125 10 N -0.532 5.532 11 Si 0.697 3.303 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.185 1.185 15 C 0.054 3.946 16 N -0.187 5.187 17 N -0.125 5.125 18 C -0.115 4.115 19 C -0.060 4.060 20 C -0.144 4.144 21 C 0.017 3.983 22 H 0.092 0.908 23 C -0.189 4.189 24 C -0.194 4.194 25 C -0.033 4.033 26 O -0.289 6.289 27 N -0.173 5.173 28 C -0.062 4.062 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.107 0.893 48 H 0.077 0.923 49 H 0.097 0.903 50 H 0.107 0.893 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.033 11.401 -14.797 19.110 hybrid contribution -0.704 -1.577 -1.215 2.111 sum 3.329 9.825 -16.011 19.078 Atomic orbital electron populations 1.22686 0.82950 1.02221 0.99002 1.88240 1.17956 1.27022 1.94875 1.22535 0.93685 0.85131 0.99406 1.22040 0.92365 1.00487 0.90754 1.59254 1.05589 1.18673 1.34107 1.20797 1.00157 0.80025 0.96923 1.21511 1.31578 0.92558 1.12287 0.90388 1.24842 0.94811 0.97583 0.95279 1.69920 1.42761 1.08922 1.31609 0.86933 0.81292 0.80177 0.81856 1.20510 1.21115 1.18519 1.22630 0.90910 0.95878 0.85134 1.74519 0.96047 1.25651 1.22525 1.73764 1.14271 1.18490 1.05928 1.24266 0.85982 1.03272 0.97942 1.19821 0.92607 0.99192 0.94425 1.21649 0.97382 0.99113 0.96281 1.23076 0.98280 0.85574 0.91349 0.90844 1.22990 1.02501 0.98365 0.95053 1.22938 1.02137 0.96096 0.98218 1.23368 0.93828 0.95339 0.90764 1.89174 1.59277 1.46798 1.33619 1.45728 1.08693 1.44224 1.18610 1.22009 1.01464 0.96890 0.85868 0.94732 0.94799 0.90183 0.93077 0.93375 0.90042 0.89334 0.90462 0.96192 0.92726 0.89821 0.88835 0.91143 0.89716 0.90479 0.90421 0.90805 0.90683 0.89267 0.92336 0.90293 0.89292 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.36 -6.87 7.69 -35.23 -0.27 -7.14 16 3 C 0.07 1.16 6.24 37.16 0.23 1.40 16 4 C 0.07 1.42 4.95 -3.82 -0.02 1.40 16 5 N -0.45 -9.71 4.72 -175.87 -0.83 -10.54 16 6 C 0.15 3.43 3.69 -4.97 -0.02 3.41 16 7 C -0.54 -15.23 8.20 -34.44 -0.28 -15.51 16 8 H 0.08 2.51 6.72 -52.48 -0.35 2.16 16 9 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 10 N -0.89 -27.74 13.96 55.43 0.77 -26.96 16 11 Si 0.87 21.14 27.38 -169.99 -4.65 16.49 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.26 -6.01 6.68 56.52 0.38 -5.63 16 15 C 0.41 9.13 6.25 -318.89 -1.99 7.13 16 16 N -0.34 -8.09 11.00 30.31 0.33 -7.76 16 17 N -0.29 -6.31 12.18 32.99 0.40 -5.91 16 18 C 0.15 2.90 7.32 -154.02 -1.13 1.77 16 19 C -0.02 -0.29 5.36 -27.88 -0.15 -0.44 16 20 C -0.11 -1.19 4.82 -26.73 -0.13 -1.32 16 21 C 0.07 0.72 3.25 -25.95 -0.08 0.63 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 23 C -0.15 -1.16 6.63 -25.16 -0.17 -1.33 16 24 C -0.16 -1.05 7.09 -25.16 -0.18 -1.23 16 25 C 0.04 0.35 7.63 37.93 0.29 0.64 16 26 O -0.37 -4.10 11.13 -35.23 -0.39 -4.49 16 27 N -0.48 -9.33 3.21 -121.46 -0.39 -9.72 16 28 C 0.08 1.27 9.18 59.85 0.55 1.82 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.93 6.15 -51.93 -0.32 1.61 16 35 H 0.09 1.68 7.45 -51.93 -0.39 1.30 16 36 H 0.08 1.85 4.69 -51.93 -0.24 1.61 16 37 H 0.02 0.46 4.49 -51.93 -0.23 0.23 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.08 1.14 7.79 -51.93 -0.40 0.74 16 40 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 0.60 7.87 -51.93 -0.41 0.20 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.08 1.32 7.80 -51.93 -0.40 0.91 16 50 H 0.09 1.33 7.62 -51.93 -0.40 0.93 16 51 H 0.08 1.02 7.88 -51.93 -0.41 0.61 16 LS Contribution 399.98 15.07 6.03 6.03 Total: -1.00 -35.49 399.98 -9.70 -45.20 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -8.64 Total: 2.78 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -2.06 Total: 2.04 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 0.29 Total: -60.90 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.66 Total: -11.63 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.65 Total: 16.49 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.49 -9.70 -45.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646683413.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.666 kcal (2) G-P(sol) polarization free energy of solvation -35.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds