Wall clock time and date at job start Tue Mar 31 2020 20:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99917 * 2 1 4 4 C 1.53000 * 109.47040 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47259 * 66.50853 * 4 3 2 6 6 C 1.46905 * 110.99881 * 286.87023 * 5 4 3 7 7 C 1.50703 * 109.47005 * 298.91302 * 6 5 4 8 8 H 1.08005 * 119.99627 * 4.57332 * 7 6 5 9 9 C 1.37875 * 120.00168 * 184.57129 * 7 6 5 10 10 N 1.31509 * 120.00187 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99963 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47214 * 89.99766 * 11 9 7 13 13 H 1.48492 * 109.47236 * 210.00308 * 11 9 7 14 14 H 1.48505 * 109.47071 * 330.00020 * 11 9 7 15 15 C 1.38573 * 111.00378 * 162.91227 * 5 4 3 16 16 N 1.31217 * 126.47369 * 0.04490 * 15 5 4 17 17 N 1.28526 * 109.86170 * 179.69011 * 16 15 5 18 18 C 1.30297 * 110.05281 * 0.45409 * 17 16 15 19 19 C 1.50702 * 126.34834 * 179.82175 * 18 17 16 20 20 C 1.53000 * 109.46935 * 269.68693 * 19 18 17 21 21 C 1.53002 * 109.47143 * 179.97438 * 20 19 18 22 22 H 1.09001 * 110.32907 * 307.25090 * 21 20 19 23 23 C 1.54479 * 110.37397 * 184.99952 * 21 20 19 24 24 C 1.54510 * 104.06286 * 217.18986 * 23 21 20 25 25 C 1.54479 * 104.06160 * 0.02562 * 24 23 21 26 26 O 1.44420 * 104.80511 * 23.97575 * 25 24 23 27 27 N 1.36453 * 126.47585 * 179.97438 * 15 5 4 28 28 C 1.46506 * 127.13322 * 0.06288 * 27 15 5 29 29 H 1.09004 * 109.46867 * 300.00200 * 1 2 3 30 30 H 1.08999 * 109.47282 * 59.99720 * 1 2 3 31 31 H 1.09002 * 109.47136 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47605 * 60.00046 * 3 2 1 33 33 H 1.09004 * 109.47196 * 299.99892 * 3 2 1 34 34 H 1.09000 * 109.47410 * 306.50993 * 4 3 2 35 35 H 1.08999 * 109.47419 * 186.50344 * 4 3 2 36 36 H 1.08998 * 109.47022 * 58.91294 * 6 5 4 37 37 H 1.09000 * 109.47348 * 178.91161 * 6 5 4 38 38 H 0.96998 * 119.99998 * 180.02562 * 10 9 7 39 39 H 1.08991 * 109.47263 * 149.68456 * 19 18 17 40 40 H 1.09005 * 109.46904 * 29.68553 * 19 18 17 41 41 H 1.08996 * 109.46990 * 299.99636 * 20 19 18 42 42 H 1.09001 * 109.47008 * 60.00212 * 20 19 18 43 43 H 1.09003 * 110.50796 * 335.83767 * 23 21 20 44 44 H 1.09000 * 110.50898 * 98.54737 * 23 21 20 45 45 H 1.08993 * 110.50783 * 118.64209 * 24 23 21 46 46 H 1.08997 * 110.51039 * 241.21745 * 24 23 21 47 47 H 1.08997 * 110.37599 * 142.81332 * 25 24 23 48 48 H 1.09001 * 110.37001 * 265.03679 * 25 24 23 49 49 H 1.08999 * 109.46756 * 269.99122 * 28 27 15 50 50 H 1.08998 * 109.47464 * 29.99905 * 28 27 15 51 51 H 1.09005 * 109.46881 * 149.99468 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9806 0.5954 -1.2693 6 6 3.6666 -0.8388 -1.3229 7 6 4.3848 -1.5522 -0.2064 8 1 4.9519 -0.9873 0.5186 9 6 4.3177 -2.9260 -0.1106 10 7 4.9440 -3.5486 0.8639 11 14 3.3361 -3.9029 -1.3643 12 1 4.2157 -4.2735 -2.5018 13 1 2.8058 -5.1347 -0.7268 14 1 2.2063 -3.0769 -1.8609 15 6 5.3337 0.8154 -1.4717 16 7 6.1486 1.4563 -0.6674 17 7 7.3340 1.4663 -1.1640 18 6 7.3436 0.8459 -2.3097 19 6 8.5379 0.6448 -3.2066 20 6 8.6401 1.8131 -4.1893 21 6 9.8530 1.6093 -5.0994 22 1 10.7486 1.4338 -4.5033 23 6 10.0495 2.8368 -6.0165 24 6 10.5173 2.2315 -7.3589 25 6 10.5475 0.7099 -7.0942 26 8 9.6229 0.5066 -6.0036 27 7 6.0706 0.4055 -2.5445 28 6 5.5960 -0.3492 -3.7070 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8491 0.5466 0.8269 35 1 3.9783 2.1738 0.1170 36 1 2.5915 -0.9797 -1.2118 37 1 3.9894 -1.2458 -2.2811 38 1 4.8971 -4.5151 0.9310 39 1 8.4236 -0.2869 -3.7604 40 1 9.4432 0.5989 -2.6012 41 1 7.7349 1.8589 -4.7946 42 1 8.7545 2.7449 -3.6353 43 1 9.1084 3.3714 -6.1458 44 1 10.8134 3.4993 -5.6094 45 1 9.8076 2.4669 -8.1518 46 1 11.5115 2.5966 -7.6166 47 1 10.2174 0.1643 -7.9782 48 1 11.5506 0.3945 -6.8073 49 1 5.6933 -1.4171 -3.5113 50 1 4.5498 -0.1079 -3.8946 51 1 6.1922 -0.0841 -4.5803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646683413.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:05 Heat of formation + Delta-G solvation = -24.134169 kcal Electronic energy + Delta-G solvation = -30803.785891 eV Core-core repulsion = 26739.381326 eV Total energy + Delta-G solvation = -4064.404565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.83252 -40.34315 -39.56006 -37.79362 -36.12795 -34.98444 -34.58214 -32.93988 -31.42623 -31.00858 -29.54305 -28.25460 -27.91843 -26.96651 -25.18829 -24.19564 -23.51532 -22.61704 -21.82523 -21.42081 -21.21102 -19.27416 -18.15143 -17.52307 -17.36885 -17.27862 -17.08465 -16.78312 -16.45524 -16.43307 -16.08891 -15.62032 -15.49887 -15.18324 -14.64216 -14.51947 -14.43717 -14.27221 -14.01870 -13.84177 -13.54505 -13.44794 -13.10963 -12.81280 -12.71997 -12.63538 -12.57601 -12.43346 -12.38918 -12.35346 -12.13671 -11.94112 -11.82105 -11.74849 -11.70368 -11.43702 -11.20394 -10.96951 -10.79906 -10.66247 -10.51857 -10.36876 -9.02383 -8.29597 -6.34208 0.92200 1.30547 1.35293 1.47374 1.52506 1.96122 2.32957 2.96479 3.00822 3.02179 3.11590 3.35181 3.75402 3.77777 3.87223 3.97976 4.09556 4.09821 4.15837 4.22343 4.28770 4.32267 4.37809 4.46822 4.50283 4.54125 4.55237 4.60779 4.63227 4.66137 4.71072 4.75926 4.83765 4.89461 4.91431 4.95630 5.02529 5.08465 5.10577 5.14764 5.19333 5.21107 5.25554 5.29881 5.45570 5.73663 5.88686 5.98641 6.19897 6.39309 6.47790 6.68983 7.28320 7.90640 8.87958 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.003064 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.496878 B = 9137.431788 C = 9994.930627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.404 6.404 3 C 0.077 3.923 4 C 0.074 3.926 5 N -0.440 5.440 6 C 0.159 3.841 7 C -0.534 4.534 8 H 0.019 0.981 9 C 0.012 3.988 10 N -0.951 5.951 11 Si 0.943 3.057 12 H -0.263 1.263 13 H -0.287 1.287 14 H -0.234 1.234 15 C 0.388 3.612 16 N -0.376 5.376 17 N -0.326 5.326 18 C 0.171 3.829 19 C -0.018 4.018 20 C -0.095 4.095 21 C 0.075 3.925 22 H 0.079 0.921 23 C -0.150 4.150 24 C -0.151 4.151 25 C 0.036 3.964 26 O -0.395 6.395 27 N -0.481 5.481 28 C 0.074 3.926 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.097 0.903 48 H 0.066 0.934 49 H 0.070 0.930 50 H 0.100 0.900 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.957 11.402 -19.354 22.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.324 6.324 3 C 0.001 3.999 4 C -0.054 4.054 5 N -0.162 5.162 6 C 0.034 3.966 7 C -0.573 4.573 8 H 0.038 0.962 9 C -0.185 4.185 10 N -0.591 5.591 11 Si 0.766 3.234 12 H -0.188 1.188 13 H -0.212 1.212 14 H -0.157 1.157 15 C 0.030 3.970 16 N -0.220 5.220 17 N -0.165 5.165 18 C -0.098 4.098 19 C -0.058 4.058 20 C -0.133 4.133 21 C 0.018 3.982 22 H 0.097 0.903 23 C -0.188 4.188 24 C -0.189 4.189 25 C -0.040 4.040 26 O -0.315 6.315 27 N -0.175 5.175 28 C -0.068 4.068 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.109 0.891 45 H 0.096 0.904 46 H 0.110 0.890 47 H 0.116 0.884 48 H 0.084 0.916 49 H 0.088 0.912 50 H 0.118 0.882 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.116 11.898 -18.443 22.168 hybrid contribution -0.306 -1.668 -0.024 1.696 sum 2.810 10.230 -18.467 21.298 Atomic orbital electron populations 1.22883 0.80413 1.03026 1.00930 1.88131 1.20796 1.28189 1.95249 1.22513 0.90745 0.84981 1.01689 1.22025 0.95319 0.99372 0.88664 1.59361 1.05316 1.17189 1.34381 1.20598 0.99719 0.80919 0.95412 1.21617 1.30797 0.92610 1.12240 0.96245 1.25862 0.96107 0.98846 0.97686 1.70111 1.45267 1.09311 1.34452 0.85775 0.80365 0.78277 0.79007 1.18774 1.21248 1.15717 1.22839 0.91336 0.96745 0.86038 1.74395 0.96975 1.26836 1.23841 1.73684 1.13977 1.21004 1.07820 1.25202 0.86954 1.00500 0.97144 1.20061 0.90550 1.00852 0.94297 1.21542 0.98419 0.97635 0.95740 1.23070 0.97325 0.86403 0.91420 0.90270 1.22992 1.02949 0.97661 0.95195 1.22934 1.03211 0.95074 0.97688 1.23566 0.93738 0.96418 0.90278 1.89136 1.60332 1.47425 1.34624 1.46043 1.08548 1.44022 1.18910 1.22310 1.02983 0.95913 0.85613 0.93002 0.92606 0.90030 0.90629 0.91003 0.94882 0.88888 0.89803 0.94715 0.92717 0.89020 0.88279 0.91252 0.89806 0.90705 0.89114 0.90447 0.89013 0.88439 0.91564 0.91150 0.88154 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 11.01 113.37 1.25 1.85 16 2 O -0.40 -14.82 7.69 -148.98 -1.15 -15.97 16 3 C 0.08 2.50 6.24 71.98 0.45 2.95 16 4 C 0.07 3.06 4.95 86.30 0.43 3.48 16 5 N -0.44 -18.97 4.72 -710.34 -3.35 -22.32 16 6 C 0.16 7.44 3.69 85.56 0.32 7.76 16 7 C -0.53 -31.18 8.20 25.60 0.21 -30.97 16 8 H 0.02 1.34 6.72 -2.91 -0.02 1.32 16 9 C 0.01 0.73 5.47 84.66 0.46 1.19 16 10 N -0.95 -61.41 13.96 21.45 0.30 -61.11 16 11 Si 0.94 43.27 27.38 68.60 1.88 45.15 16 12 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 13 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 14 H -0.23 -9.68 6.68 99.48 0.66 -9.02 16 15 C 0.39 17.61 6.25 260.12 1.63 19.24 16 16 N -0.38 -18.59 11.00 -58.01 -0.64 -19.22 16 17 N -0.33 -14.92 12.18 -49.54 -0.60 -15.52 16 18 C 0.17 6.47 7.32 137.64 1.01 7.48 16 19 C -0.02 -0.48 5.36 29.85 0.16 -0.32 16 20 C -0.09 -1.98 4.82 30.59 0.15 -1.83 16 21 C 0.08 1.29 3.25 31.10 0.10 1.39 16 22 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 23 C -0.15 -1.93 6.63 31.61 0.21 -1.73 16 24 C -0.15 -1.62 7.09 31.61 0.22 -1.39 16 25 C 0.04 0.49 7.63 72.48 0.55 1.04 16 26 O -0.40 -7.92 11.13 -148.98 -1.66 -9.58 16 27 N -0.48 -18.63 3.21 -538.17 -1.73 -20.36 16 28 C 0.07 2.15 9.18 127.77 1.17 3.32 16 29 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.03 1.68 6.15 -2.39 -0.01 1.67 16 35 H 0.09 3.69 7.45 -2.39 -0.02 3.67 16 36 H 0.08 3.90 4.69 -2.39 -0.01 3.88 16 37 H 0.03 1.53 4.49 -2.39 -0.01 1.52 16 38 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 39 H 0.09 2.35 7.79 -2.39 -0.02 2.33 16 40 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.07 1.00 7.87 -2.39 -0.02 0.98 16 44 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.07 2.21 7.80 -2.39 -0.02 2.19 16 50 H 0.10 2.72 7.62 -2.39 -0.02 2.70 16 51 H 0.12 2.58 7.88 -2.38 -0.02 2.57 16 Total: -1.00 -82.27 399.98 2.24 -80.04 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.87 Total: 25.41 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 8.32 Total: 13.48 kcal Atomic # 7 Polarization: -132.51 SS G_CDS: -6.02 Total: -138.53 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -2.80 Total: -25.54 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.15 kcal Total: -82.27 2.24 -80.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646683413.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.903 kcal (2) G-P(sol) polarization free energy of solvation -82.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds