Wall clock time and date at job start Tue Mar 31 2020 21:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52991 * 109.47363 * 2 1 4 4 H 1.08999 * 109.47287 * 57.54754 * 3 2 1 5 5 C 1.52998 * 109.47441 * 177.54903 * 3 2 1 6 6 C 1.50704 * 109.47567 * 184.99732 * 5 3 2 7 7 C 1.38245 * 119.97090 * 89.99744 * 6 5 3 8 8 C 1.38197 * 120.02412 * 179.97438 * 7 6 5 9 9 C 1.38453 * 119.97786 * 0.02562 * 8 7 6 10 10 F 1.35093 * 120.02901 * 179.97438 * 9 8 7 11 11 C 1.38460 * 119.94525 * 0.25912 * 9 8 7 12 12 C 1.38201 * 119.97674 * 359.46620 * 11 9 8 13 13 N 1.46908 * 109.47356 * 297.54797 * 3 2 1 14 14 C 1.46892 * 110.99859 * 304.94709 * 13 3 2 15 15 C 1.53005 * 109.47213 * 178.63431 * 14 13 3 16 16 H 1.08992 * 109.47064 * 305.00081 * 15 14 13 17 17 O 1.42905 * 109.46785 * 64.99925 * 15 14 13 18 18 C 1.52996 * 109.47238 * 184.99699 * 15 14 13 19 19 N 1.46898 * 109.46913 * 178.08935 * 18 15 14 20 20 C 1.46903 * 111.00012 * 163.79351 * 19 18 15 21 21 C 1.46901 * 110.99947 * 287.74763 * 19 18 15 22 22 C 1.50694 * 109.47137 * 170.00201 * 21 19 18 23 23 H 1.07996 * 120.00124 * 0.02562 * 22 21 19 24 24 C 1.37881 * 120.00174 * 179.97438 * 22 21 19 25 25 N 1.31512 * 120.00280 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99710 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47129 * 90.00223 * 26 24 22 28 28 H 1.48500 * 109.46948 * 209.99705 * 26 24 22 29 29 H 1.48501 * 109.47368 * 330.00063 * 26 24 22 30 30 H 1.08993 * 109.47433 * 305.60059 * 1 2 3 31 31 H 1.09004 * 109.47170 * 65.60082 * 1 2 3 32 32 H 1.09000 * 109.47286 * 185.59548 * 1 2 3 33 33 H 1.09004 * 109.47199 * 239.99413 * 2 1 3 34 34 H 1.09004 * 109.46749 * 120.00080 * 2 1 3 35 35 H 1.09003 * 109.47064 * 65.00308 * 5 3 2 36 36 H 1.09002 * 109.47602 * 305.00239 * 5 3 2 37 37 H 1.07997 * 119.98955 * 359.97438 * 7 6 5 38 38 H 1.08003 * 120.01093 * 180.02562 * 8 7 6 39 39 H 1.08002 * 120.01408 * 179.72254 * 11 9 8 40 40 H 1.07997 * 119.99194 * 180.27525 * 12 11 9 41 41 H 1.00902 * 110.99206 * 68.89693 * 13 3 2 42 42 H 1.09001 * 109.47056 * 298.63824 * 14 13 3 43 43 H 1.09008 * 109.47262 * 58.63505 * 14 13 3 44 44 H 0.96702 * 113.99913 * 60.00018 * 17 15 14 45 45 H 1.08999 * 109.47032 * 298.08735 * 18 15 14 46 46 H 1.09003 * 109.46901 * 58.08956 * 18 15 14 47 47 H 1.09004 * 109.47099 * 65.38456 * 20 19 18 48 48 H 1.08995 * 109.47459 * 185.38545 * 20 19 18 49 49 H 1.08996 * 109.47081 * 305.38976 * 20 19 18 50 50 H 1.09001 * 109.47041 * 289.99972 * 21 19 18 51 51 H 1.09000 * 109.46970 * 49.99929 * 21 19 18 52 52 H 0.96998 * 120.00709 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6412 1.9688 0.8672 5 6 3.5687 1.4428 0.0617 6 6 4.0662 2.8600 0.1854 7 6 4.2459 3.4222 1.4355 8 6 4.7026 4.7215 1.5503 9 6 4.9795 5.4604 0.4127 10 9 5.4254 6.7308 0.5236 11 6 4.7934 4.8983 -0.8389 12 6 4.3421 3.5969 -0.9512 13 7 1.5993 2.1177 -1.2280 14 6 2.0200 1.3695 -2.4201 15 6 1.5148 2.0839 -3.6752 16 1 0.4356 2.2203 -3.6061 17 8 2.1500 3.3593 -3.7856 18 6 1.8444 1.2415 -4.9091 19 7 1.3191 1.9053 -6.1097 20 6 1.9289 1.3523 -7.3264 21 6 -0.1458 1.8105 -6.1652 22 6 -0.6655 2.7017 -7.2637 23 1 0.0234 3.2803 -7.8611 24 6 -2.0206 2.7777 -7.5067 25 7 -2.4743 3.5558 -8.4650 26 14 -3.2122 1.7753 -6.4748 27 1 -3.6317 2.5692 -5.2920 28 1 -4.4056 1.4328 -7.2895 29 1 -2.5467 0.5272 -6.0225 30 1 -0.3634 0.5982 0.8355 31 1 -0.3634 0.4245 -0.9359 32 1 -0.3634 -1.0228 0.1002 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 3.9692 0.9955 -0.8481 36 1 3.8977 0.8655 0.9258 37 1 4.0295 2.8458 2.3228 38 1 4.8433 5.1603 2.5271 39 1 5.0048 5.4753 -1.7271 40 1 4.2011 3.1567 -1.9273 41 1 0.6003 2.2595 -1.2239 42 1 3.1081 1.3121 -2.4478 43 1 1.6039 0.3627 -2.3828 44 1 3.1137 3.3143 -3.8512 45 1 2.9255 1.1337 -4.9972 46 1 1.3879 0.2567 -4.8092 47 1 1.6295 0.3105 -7.4417 48 1 1.5953 1.9241 -8.1923 49 1 3.0144 1.4117 -7.2480 50 1 -0.4358 0.7792 -6.3663 51 1 -0.5668 2.1269 -5.2109 52 1 -3.4275 3.6090 -8.6363 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647557743.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:19 Heat of formation + Delta-G solvation = -93.383200 kcal Electronic energy + Delta-G solvation = -30213.730554 eV Core-core repulsion = 26126.403164 eV Total energy + Delta-G solvation = -4087.327390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.80569 -40.51038 -39.45981 -38.29881 -36.81001 -34.58614 -33.20739 -32.82719 -31.91303 -30.79329 -29.85839 -28.64652 -26.86625 -25.13411 -24.57572 -23.89607 -23.05649 -22.17618 -21.58677 -20.46669 -19.03980 -18.53670 -17.89780 -17.17669 -16.97593 -16.60220 -16.51819 -16.42105 -16.38937 -16.02876 -15.73572 -15.30126 -15.03333 -14.84694 -14.61809 -14.57535 -14.44357 -14.30243 -14.17417 -13.97802 -13.33815 -13.28220 -13.25167 -13.04660 -12.88522 -12.61128 -12.54734 -12.43272 -12.35173 -12.26913 -11.88701 -11.85980 -11.80498 -11.69836 -11.62728 -11.51019 -11.28812 -10.77754 -10.60983 -9.89112 -9.35241 -9.11037 -8.93016 -8.28393 -6.31102 0.32168 0.46280 1.31478 1.33638 1.43380 2.32950 2.77441 2.99961 3.05725 3.44106 3.46109 3.79937 3.82296 3.88208 4.00134 4.07147 4.14457 4.19107 4.26050 4.35952 4.37755 4.42499 4.45641 4.54047 4.57137 4.63255 4.67421 4.73334 4.75719 4.81153 4.89738 4.91108 4.92586 5.00948 5.07551 5.14048 5.14833 5.20012 5.23836 5.29414 5.32082 5.34903 5.42097 5.46695 5.55716 5.77210 5.98884 6.10536 6.23904 6.39257 6.49836 6.68356 6.75548 7.17423 7.32018 8.88708 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011619 B = 0.002860 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.315963 B = 9787.290598 C =10857.585361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.155 4.155 3 C 0.096 3.904 4 H 0.082 0.918 5 C -0.070 4.070 6 C -0.075 4.075 7 C -0.094 4.094 8 C -0.162 4.162 9 C 0.060 3.940 10 F -0.158 7.158 11 C -0.165 4.165 12 C -0.064 4.064 13 N -0.676 5.676 14 C 0.037 3.963 15 C 0.121 3.879 16 H 0.063 0.937 17 O -0.551 6.551 18 C 0.024 3.976 19 N -0.541 5.541 20 C 0.042 3.958 21 C 0.175 3.825 22 C -0.514 4.514 23 H 0.035 0.965 24 C 0.005 3.995 25 N -0.950 5.950 26 Si 0.946 3.054 27 H -0.266 1.266 28 H -0.281 1.281 29 H -0.250 1.250 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.338 0.662 42 H 0.093 0.907 43 H 0.048 0.952 44 H 0.374 0.626 45 H 0.096 0.904 46 H 0.036 0.964 47 H 0.017 0.983 48 H 0.042 0.958 49 H 0.083 0.917 50 H -0.016 1.016 51 H 0.025 0.975 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.414 -9.847 24.763 30.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.194 4.194 3 C -0.013 4.013 4 H 0.100 0.900 5 C -0.107 4.107 6 C -0.075 4.075 7 C -0.112 4.112 8 C -0.181 4.181 9 C 0.041 3.959 10 F -0.137 7.137 11 C -0.184 4.184 12 C -0.082 4.082 13 N -0.307 5.307 14 C -0.093 4.093 15 C 0.061 3.939 16 H 0.081 0.919 17 O -0.356 6.356 18 C -0.105 4.105 19 N -0.265 5.265 20 C -0.106 4.106 21 C 0.048 3.952 22 C -0.552 4.552 23 H 0.053 0.947 24 C -0.192 4.192 25 N -0.591 5.591 26 Si 0.770 3.230 27 H -0.191 1.191 28 H -0.206 1.206 29 H -0.173 1.173 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.171 0.829 38 H 0.161 0.839 39 H 0.149 0.851 40 H 0.154 0.846 41 H 0.156 0.844 42 H 0.111 0.889 43 H 0.066 0.934 44 H 0.221 0.779 45 H 0.114 0.886 46 H 0.054 0.946 47 H 0.035 0.965 48 H 0.061 0.939 49 H 0.101 0.899 50 H 0.002 0.998 51 H 0.043 0.957 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.333 -8.603 24.721 30.335 hybrid contribution -1.230 -1.211 -0.480 1.792 sum 14.102 -9.814 24.241 29.712 Atomic orbital electron populations 1.21782 0.96272 1.01973 1.01340 1.22225 0.95796 0.98148 1.03255 1.21630 0.94579 0.92407 0.92733 0.89997 1.20718 0.94110 0.91885 1.04004 1.19959 0.97797 0.97183 0.92566 1.21157 0.97819 0.93891 0.98302 1.21287 1.03125 0.95919 0.97721 1.18053 1.02431 0.79685 0.95719 1.91440 1.87383 1.37802 1.97101 1.21314 1.03366 0.97546 0.96151 1.20981 0.95232 0.92364 0.99624 1.60533 1.19712 1.49411 1.01024 1.22624 1.01806 0.95380 0.89510 1.21765 0.96688 0.83783 0.91672 0.91884 1.86698 1.24107 1.28526 1.96246 1.22882 1.01122 0.95376 0.91131 1.61724 1.06136 1.56283 1.02331 1.22186 0.99166 0.96378 0.92849 1.19913 0.85963 0.93547 0.95748 1.21290 0.92307 1.25281 1.16336 0.94698 1.25877 1.00289 0.96554 0.96484 1.70055 1.14698 1.40884 1.33464 0.85728 0.78317 0.79992 0.78989 1.19101 1.20638 1.17332 0.92256 0.94129 0.92396 0.91525 0.90050 0.90300 0.88593 0.82914 0.83911 0.85081 0.84580 0.84372 0.88890 0.93422 0.77915 0.88554 0.94610 0.96469 0.93905 0.89889 0.99843 0.95715 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.49 71.98 0.68 -1.41 16 2 C -0.16 -1.69 4.99 30.59 0.15 -1.53 16 3 C 0.10 1.18 2.55 44.91 0.11 1.30 16 4 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 5 C -0.07 -0.72 4.72 29.85 0.14 -0.58 16 6 C -0.07 -1.10 4.95 -19.86 -0.10 -1.20 16 7 C -0.09 -1.31 9.70 22.26 0.22 -1.09 16 8 C -0.16 -2.81 10.03 22.31 0.22 -2.59 16 9 C 0.06 1.32 7.30 22.37 0.16 1.48 16 10 F -0.16 -3.93 17.27 44.97 0.78 -3.15 16 11 C -0.16 -3.46 10.03 22.31 0.22 -3.24 16 12 C -0.06 -1.14 9.30 22.26 0.21 -0.93 16 13 N -0.68 -11.79 5.63 -491.57 -2.77 -14.56 16 14 C 0.04 0.64 4.46 86.31 0.39 1.02 16 15 C 0.12 3.25 3.16 30.59 0.10 3.35 16 16 H 0.06 2.11 6.55 -2.39 -0.02 2.10 16 17 O -0.55 -16.49 13.19 -148.98 -1.96 -18.46 16 18 C 0.02 0.67 4.63 86.30 0.40 1.07 16 19 N -0.54 -21.72 4.61 -927.07 -4.27 -26.00 16 20 C 0.04 1.57 9.32 127.69 1.19 2.76 16 21 C 0.18 8.45 3.64 85.55 0.31 8.76 16 22 C -0.51 -30.45 9.09 25.60 0.23 -30.22 16 23 H 0.03 2.32 7.34 -2.91 -0.02 2.30 16 24 C 0.00 0.29 5.47 84.66 0.46 0.75 16 25 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 26 Si 0.95 44.60 27.47 68.60 1.88 46.49 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 28 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 29 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.04 0.66 7.23 -2.38 -0.02 0.65 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.77 6.16 -2.39 -0.01 0.76 16 34 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.08 0.79 6.27 -2.39 -0.01 0.77 16 36 H 0.10 0.63 8.09 -2.39 -0.02 0.61 16 37 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 39 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 40 H 0.14 2.17 6.57 -2.91 -0.02 2.15 16 41 H 0.34 6.77 7.57 -89.69 -0.68 6.10 16 42 H 0.09 1.29 5.68 -2.39 -0.01 1.28 16 43 H 0.05 0.79 6.09 -2.38 -0.01 0.78 16 44 H 0.37 8.20 8.35 -74.06 -0.62 7.58 16 45 H 0.10 2.14 7.87 -2.39 -0.02 2.12 16 46 H 0.04 0.99 8.05 -2.39 -0.02 0.97 16 47 H 0.02 0.59 8.13 -2.38 -0.02 0.58 16 48 H 0.04 1.87 6.90 -2.39 -0.02 1.85 16 49 H 0.08 2.42 7.97 -2.39 -0.02 2.40 16 50 H -0.02 -0.76 7.17 -2.39 -0.02 -0.78 16 51 H 0.02 1.19 5.82 -2.39 -0.01 1.18 16 52 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -73.46 408.56 -1.36 -74.83 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -0.43 Total: 23.59 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 5.11 Total: -22.31 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -6.74 Total: -100.99 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -1.96 Total: -18.46 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.15 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.49 kcal Total: -73.46 -1.36 -74.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647557743.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.558 kcal (2) G-P(sol) polarization free energy of solvation -73.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds