Wall clock time and date at job start Tue Mar 31 2020 20:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99946 * 2 1 4 4 C 1.53001 * 109.46607 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47001 * 66.15277 * 4 3 2 6 6 C 1.46905 * 110.99846 * 163.04351 * 5 4 3 7 7 C 1.50704 * 109.46897 * 293.95387 * 6 5 4 8 8 H 1.08003 * 120.00088 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99681 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99765 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00176 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.47104 * 89.99949 * 11 9 7 13 13 H 1.48501 * 109.47394 * 209.99927 * 11 9 7 14 14 H 1.48503 * 109.47256 * 329.99914 * 11 9 7 15 15 C 1.38572 * 111.00019 * 286.99472 * 5 4 3 16 16 N 1.31217 * 126.47590 * 337.60686 * 15 5 4 17 17 N 1.28529 * 109.86698 * 179.97438 * 16 15 5 18 18 C 1.30295 * 110.04856 * 0.02562 * 17 16 15 19 19 C 1.50697 * 126.34786 * 179.97438 * 18 17 16 20 20 H 1.09000 * 109.47399 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.47160 * 300.02166 * 19 18 17 22 22 C 1.53002 * 109.47553 * 179.97438 * 21 19 18 23 23 C 1.52995 * 109.47100 * 300.00719 * 22 21 19 24 24 C 1.52992 * 109.47518 * 59.99236 * 23 22 21 25 25 C 1.52997 * 109.47638 * 300.00150 * 24 23 22 26 26 H 1.09001 * 109.47129 * 179.97438 * 25 24 23 27 27 O 1.42895 * 109.47112 * 300.00181 * 25 24 23 28 28 N 1.36457 * 126.47569 * 157.28977 * 15 5 4 29 29 C 1.46500 * 127.13235 * 0.04154 * 28 15 5 30 30 H 1.09000 * 109.47448 * 59.99377 * 1 2 3 31 31 H 1.08996 * 109.47598 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47118 * 299.99539 * 1 2 3 33 33 H 1.08996 * 109.46699 * 60.00380 * 3 2 1 34 34 H 1.08992 * 109.47230 * 300.00046 * 3 2 1 35 35 H 1.08998 * 109.47477 * 306.15120 * 4 3 2 36 36 H 1.09003 * 109.46545 * 186.14798 * 4 3 2 37 37 H 1.08998 * 109.47189 * 173.95375 * 6 5 4 38 38 H 1.08997 * 109.46885 * 53.95300 * 6 5 4 39 39 H 0.97002 * 119.99746 * 179.97438 * 10 9 7 40 40 H 1.09001 * 109.47030 * 300.00387 * 21 19 18 41 41 H 1.09000 * 109.46727 * 59.99879 * 21 19 18 42 42 H 1.09001 * 109.47050 * 180.02562 * 22 21 19 43 43 H 1.09008 * 109.46411 * 60.00177 * 22 21 19 44 44 H 1.09004 * 109.46592 * 299.99229 * 23 22 21 45 45 H 1.08996 * 109.47184 * 180.02562 * 23 22 21 46 46 H 1.09001 * 109.47043 * 179.97438 * 24 23 22 47 47 H 1.09004 * 109.47194 * 60.00362 * 24 23 22 48 48 H 0.96704 * 114.00193 * 299.99670 * 27 25 24 49 49 H 1.08996 * 109.47268 * 90.02012 * 29 28 15 50 50 H 1.08994 * 109.47226 * 210.02379 * 29 28 15 51 51 H 1.09002 * 109.47168 * 330.02186 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 3.9788 0.5879 -1.2677 6 6 5.4136 0.8172 -1.4840 7 6 5.6636 2.2910 -1.6749 8 1 4.8390 2.9876 -1.6395 9 6 6.9448 2.7500 -1.8957 10 7 7.1629 4.0361 -2.0628 11 14 8.3709 1.5450 -1.9576 12 1 8.5639 1.0778 -3.3539 13 1 9.6078 2.2173 -1.4851 14 1 8.0746 0.3821 -1.0829 15 6 3.6799 -0.7646 -1.3112 16 7 3.4726 -1.5511 -0.2815 17 7 3.2201 -2.7442 -0.6872 18 6 3.2517 -2.7895 -1.9889 19 6 3.0093 -4.0047 -2.8465 20 1 3.1038 -3.7324 -3.8977 21 6 4.0388 -5.0837 -2.5047 22 6 3.7924 -6.3178 -3.3750 23 6 2.3842 -6.8547 -3.1115 24 6 1.3547 -5.7758 -3.4532 25 6 1.6011 -4.5418 -2.5830 26 1 0.8678 -3.7729 -2.8268 27 8 1.4775 -4.8984 -1.2048 28 7 3.5398 -1.5287 -2.4329 29 6 3.6744 -1.0902 -3.8243 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8501 0.5514 0.8289 36 1 3.9783 2.1744 0.1094 37 1 5.7383 0.2755 -2.3724 38 1 5.9727 0.4630 -0.6180 39 1 8.0644 4.3590 -2.2178 40 1 5.0421 -4.7010 -2.6921 41 1 3.9443 -5.3561 -1.4536 42 1 4.5256 -7.0866 -3.1311 43 1 3.8867 -6.0456 -4.4263 44 1 2.2900 -7.1268 -2.0601 45 1 2.2088 -7.7341 -3.7310 46 1 0.3515 -6.1585 -3.2659 47 1 1.4489 -5.5037 -4.5045 48 1 0.6081 -5.2476 -0.9652 49 1 4.7104 -1.2048 -4.1428 50 1 3.0295 -1.6965 -4.4603 51 1 3.3832 -0.0429 -3.9049 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647684544.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:15 Heat of formation + Delta-G solvation = -6.564788 kcal Electronic energy + Delta-G solvation = -31895.418786 eV Core-core repulsion = 27831.776087 eV Total energy + Delta-G solvation = -4063.642700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.29557 -39.24792 -37.84410 -36.29825 -35.08231 -34.33139 -32.71126 -31.95025 -30.04767 -29.69580 -28.54686 -27.13184 -26.50165 -25.70740 -23.40866 -22.69180 -22.40300 -21.90538 -20.51162 -19.90746 -19.15135 -17.27777 -16.85598 -16.49414 -16.20280 -15.88297 -15.62118 -15.45059 -15.17040 -14.70107 -14.63598 -14.40663 -14.28718 -13.78505 -13.58903 -13.18946 -13.00133 -12.73182 -12.68236 -12.57287 -12.46447 -12.41459 -11.83977 -11.79720 -11.60678 -11.27515 -11.12434 -11.06978 -10.92828 -10.86158 -10.71099 -10.66128 -10.42050 -10.29858 -10.13468 -9.79370 -9.75990 -9.50538 -9.46462 -9.22399 -8.74205 -8.61167 -7.44809 -6.20539 -4.20648 2.42530 2.84221 3.18576 3.28054 3.32473 3.63432 4.18380 4.27375 4.29860 4.38328 4.50896 4.53857 4.71350 4.88171 4.92198 5.01463 5.07212 5.11734 5.25561 5.27095 5.36192 5.41087 5.43439 5.52638 5.56024 5.58060 5.66187 5.70859 5.73154 5.75147 5.82343 5.86411 5.89800 5.93330 6.02816 6.03938 6.14294 6.28171 6.40679 6.49607 6.51090 6.62004 6.76275 6.76486 7.22113 7.40638 7.53899 7.65172 7.73284 8.03898 8.45483 8.84610 9.39241 9.56675 10.91475 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012212 B = 0.004014 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.277788 B = 6973.889855 C = 8626.304449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.064 3.936 4 C 0.074 3.926 5 N -0.451 5.451 6 C 0.172 3.828 7 C -0.518 4.518 8 H 0.086 0.914 9 C 0.077 3.923 10 N -0.892 5.892 11 Si 0.869 3.131 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.266 1.266 15 C 0.383 3.617 16 N -0.311 5.311 17 N -0.252 5.252 18 C 0.148 3.852 19 C 0.021 3.979 20 H 0.087 0.913 21 C -0.105 4.105 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.151 4.151 25 C 0.120 3.880 26 H 0.049 0.951 27 O -0.534 6.534 28 N -0.482 5.482 29 C 0.081 3.919 30 H 0.030 0.970 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.114 0.886 37 H 0.023 0.977 38 H 0.004 0.996 39 H 0.266 0.734 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.367 0.633 49 H 0.073 0.927 50 H 0.077 0.923 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.873 -17.226 -4.799 22.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.283 6.283 3 C -0.013 4.013 4 C -0.053 4.053 5 N -0.176 5.176 6 C 0.047 3.953 7 C -0.556 4.556 8 H 0.104 0.896 9 C -0.126 4.126 10 N -0.530 5.530 11 Si 0.696 3.304 12 H -0.201 1.201 13 H -0.208 1.208 14 H -0.191 1.191 15 C 0.027 3.973 16 N -0.155 5.155 17 N -0.092 5.092 18 C -0.119 4.119 19 C 0.000 4.000 20 H 0.105 0.895 21 C -0.143 4.143 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.189 4.189 25 C 0.059 3.941 26 H 0.067 0.933 27 O -0.337 6.337 28 N -0.177 5.177 29 C -0.063 4.063 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.132 0.868 37 H 0.041 0.959 38 H 0.022 0.978 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.213 0.787 49 H 0.091 0.909 50 H 0.096 0.904 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.358 -17.201 -3.773 21.514 hybrid contribution 0.509 -0.115 -1.210 1.318 sum -11.849 -17.317 -4.982 21.566 Atomic orbital electron populations 1.22586 0.83081 1.01642 0.98874 1.88202 1.17728 1.27288 1.95087 1.22656 0.94179 0.84902 0.99605 1.22140 0.92476 1.01632 0.89057 1.58722 1.20616 1.02942 1.35290 1.20288 0.80134 0.99071 0.95841 1.20886 0.94914 0.89673 1.50146 0.89623 1.24803 0.98384 0.94979 0.94438 1.69868 1.21778 1.12877 1.48450 0.86953 0.82643 0.81928 0.78916 1.20075 1.20762 1.19092 1.22672 1.00730 0.91326 0.82576 1.74626 1.21107 0.96665 1.23142 1.73965 1.15586 1.12859 1.06746 1.24112 1.08653 0.85745 0.93362 1.19416 0.95158 0.89179 0.96248 0.89457 1.21468 0.97229 0.93602 1.02021 1.21539 0.96936 0.97505 0.99507 1.21445 0.94366 0.97162 1.02304 1.22273 0.99520 0.96750 1.00355 1.21557 0.95307 0.94297 0.82914 0.93278 1.86783 1.37028 1.85890 1.23988 1.45984 1.54835 1.09015 1.07849 1.21928 1.02747 1.02863 0.78727 0.95176 0.90670 0.94810 0.93300 0.93149 0.92111 0.86790 0.95927 0.97782 0.92355 0.92182 0.89582 0.91701 0.92299 0.90981 0.92364 0.91577 0.91266 0.78729 0.90879 0.90433 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 11.01 101.05 1.11 1.61 16 2 O -0.37 -6.72 7.81 -35.23 -0.27 -6.99 16 3 C 0.06 1.11 6.23 37.16 0.23 1.34 16 4 C 0.07 1.49 5.21 -3.82 -0.02 1.47 16 5 N -0.45 -9.74 4.48 -175.87 -0.79 -10.53 16 6 C 0.17 4.12 3.73 -4.97 -0.02 4.10 16 7 C -0.52 -13.84 8.82 -34.44 -0.30 -14.15 16 8 H 0.09 2.45 7.52 -52.48 -0.39 2.05 16 9 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 11 Si 0.87 20.88 27.47 -169.99 -4.67 16.21 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 15 C 0.38 8.02 5.58 -318.88 -1.78 6.24 16 16 N -0.31 -6.89 9.56 30.31 0.29 -6.60 16 17 N -0.25 -5.15 11.36 32.99 0.37 -4.78 16 18 C 0.15 2.53 6.49 -154.02 -1.00 1.53 16 19 C 0.02 0.26 2.39 -91.77 -0.22 0.04 16 20 H 0.09 0.90 6.95 -51.93 -0.36 0.54 16 21 C -0.10 -1.25 5.04 -26.73 -0.13 -1.38 16 22 C -0.12 -1.04 5.92 -26.73 -0.16 -1.19 16 23 C -0.12 -0.92 5.78 -26.74 -0.15 -1.07 16 24 C -0.15 -1.15 5.64 -26.74 -0.15 -1.30 16 25 C 0.12 1.27 3.20 -26.73 -0.09 1.18 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 O -0.53 -6.42 10.96 -35.23 -0.39 -6.81 16 28 N -0.48 -8.62 3.21 -121.47 -0.39 -9.01 16 29 C 0.08 1.13 10.77 59.85 0.64 1.77 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 1.28 7.39 -51.93 -0.38 0.90 16 36 H 0.11 2.34 6.58 -51.93 -0.34 2.00 16 37 H 0.02 0.54 7.35 -51.93 -0.38 0.16 16 38 H 0.00 0.11 7.18 -51.93 -0.37 -0.26 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.09 1.22 7.68 -51.93 -0.40 0.82 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 44 H 0.07 0.64 7.68 -51.93 -0.40 0.24 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.37 2.91 9.08 45.56 0.41 3.33 16 49 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.08 0.79 7.24 -51.93 -0.38 0.42 16 51 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 397.77 15.07 5.99 5.99 Total: -1.00 -33.92 397.77 -9.29 -43.21 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -8.08 Total: 2.29 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -2.13 Total: 2.22 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.26 Total: -56.12 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.66 Total: -13.80 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.92 -9.29 -43.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647684544.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.644 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds