Wall clock time and date at job start Tue Mar 31 2020 20:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99946 * 2 1 4 4 C 1.53001 * 109.46607 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47001 * 66.15277 * 4 3 2 6 6 C 1.46905 * 110.99846 * 163.04351 * 5 4 3 7 7 C 1.50704 * 109.46897 * 293.95387 * 6 5 4 8 8 H 1.08003 * 120.00088 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99681 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99765 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00176 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.47104 * 89.99949 * 11 9 7 13 13 H 1.48501 * 109.47394 * 209.99927 * 11 9 7 14 14 H 1.48503 * 109.47256 * 329.99914 * 11 9 7 15 15 C 1.38572 * 111.00019 * 286.99472 * 5 4 3 16 16 N 1.31217 * 126.47590 * 337.60686 * 15 5 4 17 17 N 1.28529 * 109.86698 * 179.97438 * 16 15 5 18 18 C 1.30295 * 110.04856 * 0.02562 * 17 16 15 19 19 C 1.50697 * 126.34786 * 179.97438 * 18 17 16 20 20 H 1.09000 * 109.47399 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.47160 * 300.02166 * 19 18 17 22 22 C 1.53002 * 109.47553 * 179.97438 * 21 19 18 23 23 C 1.52995 * 109.47100 * 300.00719 * 22 21 19 24 24 C 1.52992 * 109.47518 * 59.99236 * 23 22 21 25 25 C 1.52997 * 109.47638 * 300.00150 * 24 23 22 26 26 H 1.09001 * 109.47129 * 179.97438 * 25 24 23 27 27 O 1.42895 * 109.47112 * 300.00181 * 25 24 23 28 28 N 1.36457 * 126.47569 * 157.28977 * 15 5 4 29 29 C 1.46500 * 127.13235 * 0.04154 * 28 15 5 30 30 H 1.09000 * 109.47448 * 59.99377 * 1 2 3 31 31 H 1.08996 * 109.47598 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47118 * 299.99539 * 1 2 3 33 33 H 1.08996 * 109.46699 * 60.00380 * 3 2 1 34 34 H 1.08992 * 109.47230 * 300.00046 * 3 2 1 35 35 H 1.08998 * 109.47477 * 306.15120 * 4 3 2 36 36 H 1.09003 * 109.46545 * 186.14798 * 4 3 2 37 37 H 1.08998 * 109.47189 * 173.95375 * 6 5 4 38 38 H 1.08997 * 109.46885 * 53.95300 * 6 5 4 39 39 H 0.97002 * 119.99746 * 179.97438 * 10 9 7 40 40 H 1.09001 * 109.47030 * 300.00387 * 21 19 18 41 41 H 1.09000 * 109.46727 * 59.99879 * 21 19 18 42 42 H 1.09001 * 109.47050 * 180.02562 * 22 21 19 43 43 H 1.09008 * 109.46411 * 60.00177 * 22 21 19 44 44 H 1.09004 * 109.46592 * 299.99229 * 23 22 21 45 45 H 1.08996 * 109.47184 * 180.02562 * 23 22 21 46 46 H 1.09001 * 109.47043 * 179.97438 * 24 23 22 47 47 H 1.09004 * 109.47194 * 60.00362 * 24 23 22 48 48 H 0.96704 * 114.00193 * 299.99670 * 27 25 24 49 49 H 1.08996 * 109.47268 * 90.02012 * 29 28 15 50 50 H 1.08994 * 109.47226 * 210.02379 * 29 28 15 51 51 H 1.09002 * 109.47168 * 330.02186 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 3.9788 0.5879 -1.2677 6 6 5.4136 0.8172 -1.4840 7 6 5.6636 2.2910 -1.6749 8 1 4.8390 2.9876 -1.6395 9 6 6.9448 2.7500 -1.8957 10 7 7.1629 4.0361 -2.0628 11 14 8.3709 1.5450 -1.9576 12 1 8.5639 1.0778 -3.3539 13 1 9.6078 2.2173 -1.4851 14 1 8.0746 0.3821 -1.0829 15 6 3.6799 -0.7646 -1.3112 16 7 3.4726 -1.5511 -0.2815 17 7 3.2201 -2.7442 -0.6872 18 6 3.2517 -2.7895 -1.9889 19 6 3.0093 -4.0047 -2.8465 20 1 3.1038 -3.7324 -3.8977 21 6 4.0388 -5.0837 -2.5047 22 6 3.7924 -6.3178 -3.3750 23 6 2.3842 -6.8547 -3.1115 24 6 1.3547 -5.7758 -3.4532 25 6 1.6011 -4.5418 -2.5830 26 1 0.8678 -3.7729 -2.8268 27 8 1.4775 -4.8984 -1.2048 28 7 3.5398 -1.5287 -2.4329 29 6 3.6744 -1.0902 -3.8243 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8501 0.5514 0.8289 36 1 3.9783 2.1744 0.1094 37 1 5.7383 0.2755 -2.3724 38 1 5.9727 0.4630 -0.6180 39 1 8.0644 4.3590 -2.2178 40 1 5.0421 -4.7010 -2.6921 41 1 3.9443 -5.3561 -1.4536 42 1 4.5256 -7.0866 -3.1311 43 1 3.8867 -6.0456 -4.4263 44 1 2.2900 -7.1268 -2.0601 45 1 2.2088 -7.7341 -3.7310 46 1 0.3515 -6.1585 -3.2659 47 1 1.4489 -5.5037 -4.5045 48 1 0.6081 -5.2476 -0.9652 49 1 4.7104 -1.2048 -4.1428 50 1 3.0295 -1.6965 -4.4603 51 1 3.3832 -0.0429 -3.9049 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647684544.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:15 Heat of formation + Delta-G solvation = -29.583791 kcal Electronic energy + Delta-G solvation = -31896.416965 eV Core-core repulsion = 27831.776087 eV Total energy + Delta-G solvation = -4064.640878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.74984 -40.11449 -39.29682 -37.84177 -35.98644 -35.62998 -34.76811 -32.98195 -31.35046 -30.83733 -30.04919 -28.42168 -27.99827 -27.03462 -24.52187 -23.85245 -23.74649 -23.45322 -21.52252 -21.37728 -20.24483 -19.21692 -17.97537 -17.67279 -17.61469 -17.25424 -16.83877 -16.67066 -16.55211 -16.29697 -15.83250 -15.51374 -15.46349 -15.21329 -14.77707 -14.55147 -14.43952 -14.10981 -13.79070 -13.72695 -13.55549 -13.23815 -13.22588 -13.03069 -13.00582 -12.67500 -12.61602 -12.38255 -12.26936 -12.09180 -12.03347 -11.93093 -11.77793 -11.67634 -11.38824 -11.23115 -11.08665 -10.85506 -10.84312 -10.56787 -10.53497 -10.20176 -9.07611 -8.34986 -6.39548 0.99123 1.27217 1.32393 1.40808 1.48389 2.13353 2.27034 2.90052 2.96551 3.01526 3.31854 3.48353 3.70762 3.87625 3.95056 4.03193 4.09397 4.17140 4.22216 4.28455 4.31035 4.34681 4.44151 4.46615 4.48979 4.53871 4.57567 4.59964 4.62436 4.67397 4.70236 4.75138 4.80578 4.86587 4.94360 5.00463 5.05968 5.10175 5.19843 5.26662 5.30718 5.33645 5.36472 5.40630 5.62044 5.72903 5.90654 6.21159 6.35476 6.59417 6.65757 7.07545 7.23672 8.07295 8.80023 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012212 B = 0.004014 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.277788 B = 6973.889855 C = 8626.304449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.074 3.926 4 C 0.076 3.924 5 N -0.450 5.450 6 C 0.187 3.813 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.029 3.971 10 N -0.932 5.932 11 Si 0.929 3.071 12 H -0.259 1.259 13 H -0.276 1.276 14 H -0.269 1.269 15 C 0.361 3.639 16 N -0.337 5.337 17 N -0.290 5.290 18 C 0.170 3.830 19 C 0.016 3.984 20 H 0.117 0.883 21 C -0.100 4.100 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.141 4.141 25 C 0.120 3.880 26 H 0.046 0.954 27 O -0.561 6.561 28 N -0.483 5.483 29 C 0.073 3.927 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.100 0.900 37 H 0.027 0.973 38 H -0.015 1.015 39 H 0.270 0.730 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.382 0.618 49 H 0.080 0.920 50 H 0.121 0.879 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.885 -19.672 -7.016 25.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C -0.003 4.003 4 C -0.052 4.052 5 N -0.174 5.174 6 C 0.061 3.939 7 C -0.553 4.553 8 H 0.075 0.925 9 C -0.171 4.171 10 N -0.571 5.571 11 Si 0.754 3.246 12 H -0.183 1.183 13 H -0.202 1.202 14 H -0.194 1.194 15 C 0.004 3.996 16 N -0.181 5.181 17 N -0.129 5.129 18 C -0.097 4.097 19 C -0.005 4.005 20 H 0.135 0.865 21 C -0.139 4.139 22 C -0.149 4.149 23 C -0.151 4.151 24 C -0.178 4.178 25 C 0.060 3.940 26 H 0.064 0.936 27 O -0.367 6.367 28 N -0.178 5.178 29 C -0.069 4.069 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.119 0.881 37 H 0.045 0.955 38 H 0.003 0.997 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.105 0.895 48 H 0.230 0.770 49 H 0.099 0.901 50 H 0.139 0.861 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.404 -19.663 -6.000 24.541 hybrid contribution 0.725 0.601 -0.495 1.064 sum -12.679 -19.062 -6.495 23.797 Atomic orbital electron populations 1.22731 0.80970 1.02370 1.00253 1.88167 1.20088 1.27539 1.95338 1.22510 0.92033 0.85038 1.00703 1.22094 0.94745 1.00229 0.88105 1.58688 1.18807 1.04018 1.35927 1.19970 0.81942 0.97007 0.94992 1.20963 0.94245 0.90699 1.49439 0.92454 1.25523 1.00932 0.96461 0.94156 1.69979 1.22646 1.14673 1.49830 0.85987 0.79497 0.79554 0.79589 1.18321 1.20160 1.19433 1.22557 1.02330 0.91009 0.83680 1.74517 1.21527 0.97550 1.24533 1.73909 1.17885 1.12307 1.08792 1.25063 1.05074 0.86562 0.93039 1.19826 0.96648 0.87211 0.96821 0.86515 1.21391 0.96493 0.94958 1.01024 1.21522 0.97783 0.95900 0.99700 1.21441 0.93789 0.98004 1.01895 1.22206 1.00292 0.94885 1.00444 1.21601 0.93702 0.95719 0.82951 0.93570 1.86750 1.38537 1.86200 1.25187 1.46262 1.54043 1.08828 1.08624 1.22231 1.04323 1.03101 0.77239 0.94101 0.90294 0.93020 0.90936 0.93101 0.93777 0.88149 0.95490 0.99723 0.92030 0.93367 0.92601 0.91328 0.90400 0.92431 0.90356 0.89854 0.89486 0.76969 0.90143 0.86063 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.39 -14.42 7.81 -148.98 -1.16 -15.58 16 3 C 0.07 2.59 6.23 71.98 0.45 3.04 16 4 C 0.08 3.16 5.21 86.30 0.45 3.61 16 5 N -0.45 -19.92 4.48 -710.34 -3.18 -23.10 16 6 C 0.19 9.15 3.73 85.56 0.32 9.47 16 7 C -0.52 -28.31 8.82 25.60 0.23 -28.08 16 8 H 0.06 3.42 7.52 -2.91 -0.02 3.40 16 9 C 0.03 1.62 5.47 84.65 0.46 2.08 16 10 N -0.93 -55.23 13.96 21.45 0.30 -54.93 16 11 Si 0.93 43.22 27.47 68.60 1.88 45.10 16 12 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 14 H -0.27 -12.60 6.54 99.48 0.65 -11.95 16 15 C 0.36 15.32 5.58 260.11 1.45 16.78 16 16 N -0.34 -15.28 9.56 -58.01 -0.55 -15.84 16 17 N -0.29 -11.98 11.36 -49.54 -0.56 -12.55 16 18 C 0.17 5.68 6.49 137.64 0.89 6.57 16 19 C 0.02 0.35 2.39 -11.54 -0.03 0.32 16 20 H 0.12 1.91 6.95 -2.39 -0.02 1.90 16 21 C -0.10 -2.24 5.04 30.60 0.15 -2.08 16 22 C -0.11 -1.63 5.92 30.59 0.18 -1.45 16 23 C -0.11 -1.43 5.78 30.59 0.18 -1.25 16 24 C -0.14 -1.58 5.64 30.59 0.17 -1.41 16 25 C 0.12 2.24 3.20 30.59 0.10 2.34 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 O -0.56 -12.92 10.96 -148.98 -1.63 -14.55 16 28 N -0.48 -16.85 3.21 -538.20 -1.73 -18.58 16 29 C 0.07 1.88 10.77 127.77 1.38 3.26 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.96 7.39 -2.39 -0.02 1.94 16 36 H 0.10 4.37 6.58 -2.39 -0.02 4.36 16 37 H 0.03 1.29 7.35 -2.39 -0.02 1.28 16 38 H -0.02 -0.79 7.18 -2.39 -0.02 -0.80 16 39 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.06 1.59 7.68 -2.39 -0.02 1.57 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.06 0.91 7.68 -2.38 -0.02 0.89 16 45 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 47 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 48 H 0.38 5.63 9.08 -74.05 -0.67 4.96 16 49 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.12 2.01 7.24 -2.39 -0.02 1.99 16 51 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -76.18 397.77 1.18 -75.00 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.19 Total: 19.68 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 7.63 Total: 15.34 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -5.73 Total: -124.99 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -2.80 Total: -30.14 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.10 kcal Total: -76.18 1.18 -75.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647684544.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.417 kcal (2) G-P(sol) polarization free energy of solvation -76.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds