Wall clock time and date at job start Tue Mar 31 2020 20:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48554 * 110.99663 * 2 1 4 4 C 1.54376 * 104.59558 * 200.95847 * 3 2 1 5 5 C 1.54266 * 105.06016 * 23.85634 * 4 3 2 6 6 C 1.48561 * 111.00056 * 244.58436 * 2 1 3 7 7 H 1.09002 * 110.51061 * 40.20876 * 6 2 1 8 8 C 1.50700 * 110.41359 * 277.81775 * 6 2 1 9 9 O 1.21290 * 119.99768 * 344.82753 * 8 6 2 10 10 N 1.34770 * 120.00289 * 164.82630 * 8 6 2 11 11 C 1.46504 * 120.00089 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.47364 * 180.02562 * 11 10 8 13 13 H 1.09002 * 112.84844 * 43.80241 * 12 11 10 14 14 C 1.53777 * 113.61824 * 174.99862 * 12 11 10 15 15 C 1.53784 * 87.07986 * 89.20098 * 14 12 11 16 16 H 1.09007 * 113.60892 * 270.80305 * 15 14 12 17 17 N 1.46895 * 113.61650 * 139.98878 * 15 14 12 18 18 C 1.46893 * 111.00318 * 156.52734 * 17 15 14 19 19 C 1.50708 * 109.47146 * 179.97438 * 18 17 15 20 20 O 1.21288 * 119.99815 * 359.97438 * 19 18 17 21 21 N 1.34774 * 119.99719 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99349 * 180.02562 * 21 19 18 23 23 H 1.07991 * 120.00515 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99490 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00236 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99845 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47187 * 179.97438 * 26 24 22 28 28 H 1.48502 * 109.47194 * 300.00675 * 26 24 22 29 29 H 1.48498 * 109.47018 * 60.00238 * 26 24 22 30 30 C 1.53776 * 87.17404 * 25.39193 * 15 14 12 31 31 H 1.09007 * 109.47168 * 175.41548 * 1 2 3 32 32 H 1.09002 * 109.47573 * 295.41361 * 1 2 3 33 33 H 1.08999 * 109.47321 * 55.42319 * 1 2 3 34 34 H 1.08999 * 110.41064 * 82.18211 * 3 2 1 35 35 H 1.09004 * 110.51842 * 319.79101 * 3 2 1 36 36 H 1.08997 * 110.33065 * 264.95949 * 4 3 2 37 37 H 1.09005 * 110.32214 * 142.74915 * 4 3 2 38 38 H 1.08999 * 110.32324 * 241.10148 * 5 4 3 39 39 H 1.08998 * 110.40728 * 118.93841 * 5 4 3 40 40 H 0.97000 * 120.00199 * 359.97438 * 10 8 6 41 41 H 1.08994 * 109.46932 * 60.00012 * 11 10 8 42 42 H 1.09003 * 109.46512 * 300.00150 * 11 10 8 43 43 H 1.09001 * 113.61120 * 334.65502 * 14 12 11 44 44 H 1.09000 * 113.69525 * 203.75900 * 14 12 11 45 45 H 1.00908 * 110.99391 * 280.47896 * 17 15 14 46 46 H 1.09002 * 109.47091 * 59.99845 * 18 17 15 47 47 H 1.09000 * 109.47343 * 299.99463 * 18 17 15 48 48 H 0.96996 * 120.00564 * 359.97438 * 21 19 18 49 49 H 0.97001 * 119.99781 * 179.97438 * 25 24 22 50 50 H 1.08997 * 113.61675 * 89.15521 * 30 15 14 51 51 H 1.08998 * 113.61514 * 220.06517 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3869 0.0000 4 6 3.4431 1.2502 -0.5344 5 6 3.4432 -0.0538 -1.3585 6 6 2.0014 -0.5952 -1.2527 7 1 1.4104 -0.2729 -2.1100 8 6 2.0104 -2.0992 -1.1576 9 8 1.8829 -2.6394 -0.0791 10 7 2.1601 -2.8440 -2.2708 11 6 2.1695 -4.3061 -2.1782 12 6 2.3531 -4.9044 -3.5743 13 1 3.1195 -4.3929 -4.1565 14 6 2.4988 -6.4352 -3.5742 15 6 0.9669 -6.5024 -3.6910 16 1 0.4557 -6.5146 -2.7283 17 7 0.4916 -7.5517 -4.6025 18 6 -0.8846 -7.9487 -4.2764 19 6 -1.3368 -9.0238 -5.2308 20 8 -0.5866 -9.4200 -6.0976 21 7 -2.5752 -9.5444 -5.1217 22 6 -2.9863 -10.5228 -5.9896 23 1 -2.3181 -10.8761 -6.7609 24 6 -4.2629 -11.0598 -5.8768 25 7 -5.0759 -10.6303 -4.9379 26 14 -4.8234 -12.3925 -7.0597 27 1 -6.2144 -12.7943 -6.7297 28 1 -4.7743 -11.8729 -8.4500 29 1 -3.9269 -13.5702 -6.9395 30 6 1.0311 -5.1082 -4.3367 31 1 -0.3634 -1.0244 -0.0821 32 1 -0.3634 0.4410 0.9282 33 1 -0.3634 0.5832 -0.8461 34 1 2.0077 1.7916 1.0121 35 1 1.4103 2.0230 -0.6591 36 1 4.1482 1.1749 0.2934 37 1 3.6935 2.0997 -1.1699 38 1 4.1483 -0.7692 -0.9352 39 1 3.6942 0.1540 -2.3987 40 1 2.2617 -2.4120 -3.1333 41 1 1.2248 -4.6494 -1.7567 42 1 2.9908 -4.6241 -1.5360 43 1 2.8832 -6.8372 -2.6368 44 1 3.0208 -6.8256 -4.4479 45 1 0.5641 -7.2552 -5.5643 46 1 -1.5427 -7.0844 -4.3651 47 1 -0.9207 -8.3298 -3.2558 48 1 -3.1753 -9.2273 -4.4287 49 1 -5.9672 -11.0050 -4.8594 50 1 1.1512 -5.1336 -5.4197 51 1 0.2325 -4.4403 -4.0138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656188713.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:56 Heat of formation + Delta-G solvation = -72.066045 kcal Electronic energy + Delta-G solvation = -28584.698921 eV Core-core repulsion = 24518.215873 eV Total energy + Delta-G solvation = -4066.483047 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.35051 -40.57694 -39.87574 -38.81001 -36.20844 -35.74255 -34.42807 -33.25447 -33.14498 -30.85792 -28.94200 -27.50749 -26.63529 -26.56883 -25.77996 -23.61675 -23.06151 -21.89656 -21.23346 -21.09626 -20.04639 -19.74040 -18.24383 -17.90905 -17.37209 -16.90723 -16.81111 -16.57022 -16.34517 -16.06395 -15.82612 -15.62880 -15.34728 -15.21774 -14.75718 -14.70095 -14.49998 -14.22389 -14.16392 -13.61853 -13.51428 -13.36623 -13.25265 -13.06840 -12.98337 -12.86551 -12.68767 -12.55429 -12.44537 -12.38083 -12.14468 -12.06130 -12.00664 -11.56032 -11.51337 -11.38413 -11.22476 -10.76303 -10.33839 -10.07392 -10.03029 -9.48506 -9.22342 -8.47349 -5.96667 1.39546 1.41411 1.52664 1.62645 2.03827 2.05722 2.28847 2.95748 3.08136 3.19603 3.48848 3.54326 3.57917 3.61099 3.71601 3.81478 3.97487 4.02888 4.08515 4.23784 4.29781 4.32087 4.39239 4.43373 4.45147 4.50117 4.56618 4.60815 4.68900 4.71745 4.82972 4.87832 4.90295 4.94007 5.01074 5.03534 5.11077 5.13151 5.21220 5.23749 5.35292 5.39960 5.49225 5.75462 5.92629 5.95796 6.16323 6.45576 6.58873 6.60165 7.11106 7.30101 7.54730 8.09763 8.69749 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021895 B = 0.001605 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.497869 B =17438.538386 C =18317.933769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.523 5.523 3 C 0.030 3.970 4 C -0.120 4.120 5 C -0.109 4.109 6 C 0.043 3.957 7 H 0.096 0.904 8 C 0.516 3.484 9 O -0.570 6.570 10 N -0.715 5.715 11 C 0.142 3.858 12 C -0.101 4.101 13 H 0.108 0.892 14 C -0.115 4.115 15 C 0.054 3.946 16 H 0.095 0.905 17 N -0.671 5.671 18 C 0.065 3.935 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.337 4.337 23 H 0.080 0.920 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.995 3.005 27 H -0.270 1.270 28 H -0.270 1.270 29 H -0.272 1.272 30 C -0.156 4.156 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.106 0.894 40 H 0.415 0.585 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.347 0.653 46 H 0.064 0.936 47 H 0.098 0.902 48 H 0.396 0.604 49 H 0.278 0.722 50 H 0.091 0.909 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.365 28.394 6.821 32.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.247 5.247 3 C -0.097 4.097 4 C -0.158 4.158 5 C -0.148 4.148 6 C -0.069 4.069 7 H 0.113 0.887 8 C 0.302 3.698 9 O -0.448 6.448 10 N -0.369 5.369 11 C 0.018 3.982 12 C -0.120 4.120 13 H 0.126 0.874 14 C -0.154 4.154 15 C -0.055 4.055 16 H 0.113 0.887 17 N -0.302 5.302 18 C -0.067 4.067 19 C 0.224 3.776 20 O -0.510 6.510 21 N -0.210 5.210 22 C -0.466 4.466 23 H 0.098 0.902 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.818 3.182 27 H -0.195 1.195 28 H -0.195 1.195 29 H -0.198 1.198 30 C -0.195 4.195 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.079 0.921 39 H 0.125 0.875 40 H 0.252 0.748 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.108 0.892 45 H 0.167 0.833 46 H 0.082 0.918 47 H 0.116 0.884 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.109 0.891 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.982 26.850 7.915 32.233 hybrid contribution -1.758 0.365 -1.278 2.204 sum 14.224 27.214 6.637 31.416 Atomic orbital electron populations 1.22482 0.87199 1.01334 1.02115 1.65037 1.09057 1.16588 1.34045 1.23235 0.95876 0.88352 1.02226 1.22314 0.95997 0.97535 0.99979 1.22283 0.92417 0.97382 1.02681 1.22723 0.99657 0.90484 0.94023 0.88673 1.20851 0.75355 0.89984 0.83630 1.90704 1.49869 1.74547 1.29682 1.45883 1.74060 1.06747 1.10178 1.21056 1.01387 0.79376 0.96400 1.22264 0.98634 0.96487 0.94661 0.87377 1.23038 0.95203 0.94215 1.02969 1.23310 0.97195 0.88665 0.96378 0.88720 1.60041 1.20257 1.42061 1.07891 1.21555 0.90881 0.95790 0.98519 1.20900 0.82177 0.86684 0.87794 1.90480 1.55083 1.65646 1.39761 1.41945 1.13069 1.35143 1.30874 1.19661 0.98990 1.15707 1.12284 0.90221 1.26072 0.95346 1.00702 0.99173 1.69673 1.08701 1.44160 1.33603 0.84964 0.77453 0.77743 0.78018 1.19479 1.19546 1.19756 1.23739 0.97881 0.97372 1.00495 0.93285 0.90440 0.93592 0.89723 0.92068 0.91181 0.88516 0.92055 0.87511 0.74802 0.92861 0.91858 0.91024 0.89238 0.83330 0.91775 0.88367 0.77033 0.91277 0.89092 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.44 127.69 1.21 1.47 16 2 N -0.52 -8.73 4.92 -887.04 -4.36 -13.10 16 3 C 0.03 0.31 6.49 86.45 0.56 0.87 16 4 C -0.12 -0.93 7.00 31.49 0.22 -0.71 16 5 C -0.11 -0.98 6.54 31.49 0.21 -0.78 16 6 C 0.04 0.57 2.68 44.31 0.12 0.69 16 7 H 0.10 0.84 7.97 -2.39 -0.02 0.82 16 8 C 0.52 10.10 6.72 87.66 0.59 10.69 16 9 O -0.57 -17.21 16.56 -3.06 -0.05 -17.27 16 10 N -0.72 -9.89 5.56 -463.06 -2.57 -12.46 16 11 C 0.14 2.34 5.35 86.38 0.46 2.81 16 12 C -0.10 -1.38 3.94 -10.21 -0.04 -1.42 16 13 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 14 C -0.12 -2.16 7.47 31.12 0.23 -1.92 16 15 C 0.05 1.23 3.81 45.44 0.17 1.40 16 16 H 0.09 2.15 7.46 -2.38 -0.02 2.14 16 17 N -0.67 -20.99 6.24 -492.86 -3.07 -24.07 16 18 C 0.06 2.28 6.02 85.56 0.52 2.79 16 19 C 0.44 21.14 7.82 87.66 0.69 21.83 16 20 O -0.62 -34.90 15.78 -3.05 -0.05 -34.95 16 21 N -0.57 -29.94 5.29 -306.98 -1.62 -31.56 16 22 C -0.34 -19.39 9.68 84.04 0.81 -18.57 16 23 H 0.08 4.86 7.16 -2.92 -0.02 4.84 16 24 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 25 N -0.92 -50.22 13.05 21.66 0.28 -49.94 16 26 Si 0.99 43.21 29.55 68.60 2.03 45.23 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 28 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 29 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 30 C -0.16 -2.60 7.25 31.18 0.23 -2.37 16 31 H 0.05 0.96 7.96 -2.38 -0.02 0.94 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 33 H 0.05 0.51 7.98 -2.39 -0.02 0.50 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.45 7.91 -2.38 -0.02 0.43 16 36 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 38 H 0.06 0.77 7.85 -2.39 -0.02 0.75 16 39 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.42 3.01 8.47 -92.71 -0.79 2.23 16 41 H 0.05 1.09 7.40 -2.39 -0.02 1.07 16 42 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 1.34 8.10 -2.39 -0.02 1.32 16 44 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.35 11.16 7.91 -89.69 -0.71 10.45 16 46 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.10 3.21 8.13 -2.39 -0.02 3.19 16 48 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 49 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 50 H 0.09 1.50 7.83 -2.39 -0.02 1.48 16 51 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 Total: -1.00 -76.76 413.69 -4.26 -81.03 By element: Atomic # 1 Polarization: 41.83 SS G_CDS: -1.28 Total: 40.55 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 6.44 Total: 16.53 kcal Atomic # 7 Polarization: -119.78 SS G_CDS: -11.35 Total: -131.13 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -0.10 Total: -52.22 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -76.76 -4.26 -81.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656188713.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.962 kcal (2) G-P(sol) polarization free energy of solvation -76.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds