Wall clock time and date at job start Tue Mar 31 2020 21:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 119.99933 * 2 1 4 4 O 1.21595 * 120.00102 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00321 * 179.97438 * 3 2 1 6 6 C 1.46501 * 120.00479 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47128 * 179.97438 * 6 5 3 8 8 C 1.50703 * 109.46652 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00033 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99590 * 180.02562 * 8 7 6 11 11 C 1.47066 * 120.84708 * 4.42715 * 10 8 7 12 12 C 1.53125 * 109.04894 * 233.45137 * 11 10 8 13 13 C 1.53148 * 109.62181 * 306.00929 * 12 11 10 14 14 C 1.52817 * 109.26923 * 60.84060 * 13 12 11 15 15 H 1.08999 * 109.47149 * 58.00709 * 14 13 12 16 16 C 1.53061 * 110.34253 * 178.55203 * 14 13 12 17 17 N 1.47065 * 108.33623 * 175.43559 * 16 14 13 18 18 C 1.36935 * 120.47024 * 126.70890 * 17 16 14 19 19 H 1.07999 * 119.99948 * 319.32504 * 18 17 16 20 20 C 1.38816 * 120.00247 * 139.33539 * 18 17 16 21 21 N 1.31622 * 120.00094 * 174.12494 * 20 18 17 22 22 Si 1.86804 * 119.99911 * 354.12084 * 20 18 17 23 23 H 1.48501 * 109.46894 * 86.27235 * 22 20 18 24 24 H 1.48501 * 109.47068 * 206.27386 * 22 20 18 25 25 H 1.48500 * 109.46990 * 326.27191 * 22 20 18 26 26 C 1.46866 * 119.06164 * 306.67947 * 17 16 14 27 27 C 1.53318 * 109.09463 * 52.65891 * 26 17 16 28 28 C 1.46486 * 120.80204 * 184.40670 * 10 8 7 29 29 H 1.09001 * 109.72737 * 245.28672 * 28 10 8 30 30 H 1.09001 * 109.47236 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47741 * 300.00276 * 1 2 3 32 32 H 1.09002 * 109.47130 * 60.00451 * 1 2 3 33 33 H 0.96995 * 119.99582 * 179.97438 * 2 1 3 34 34 H 0.97009 * 119.99803 * 359.97438 * 5 3 2 35 35 H 1.08998 * 109.46728 * 60.00015 * 6 5 3 36 36 H 1.09005 * 109.46974 * 300.00190 * 6 5 3 37 37 H 1.08992 * 109.46944 * 60.00077 * 7 6 5 38 38 H 1.08993 * 109.47100 * 299.99840 * 7 6 5 39 39 H 1.09007 * 109.54410 * 113.58424 * 11 10 8 40 40 H 1.09001 * 109.61494 * 353.36931 * 11 10 8 41 41 H 1.08995 * 109.44921 * 185.96081 * 12 11 10 42 42 H 1.09004 * 109.44492 * 66.04790 * 12 11 10 43 43 H 1.09004 * 109.50068 * 300.90444 * 13 12 11 44 44 H 1.09003 * 109.50662 * 180.77950 * 13 12 11 45 45 H 1.09000 * 109.69069 * 55.72490 * 16 14 13 46 46 H 1.08998 * 109.69032 * 295.14556 * 16 14 13 47 47 H 0.97001 * 119.99874 * 179.97438 * 21 20 18 48 48 H 1.09006 * 109.53314 * 292.77672 * 26 17 16 49 49 H 1.08996 * 109.60075 * 172.58355 * 26 17 16 50 50 H 1.08997 * 109.56198 * 65.73154 * 27 26 17 51 51 H 1.09001 * 109.55454 * 185.94295 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1673 0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7234 2.1564 0.0014 8 6 6.4768 3.4616 0.0014 9 8 5.8703 4.5118 0.0000 10 7 7.8245 3.4616 0.0021 11 6 8.5786 2.2027 -0.0948 12 6 9.5744 2.1260 1.0660 13 6 10.4443 3.3864 1.0815 14 6 9.5528 4.6121 1.2771 15 1 8.9920 4.5089 2.2061 16 6 10.4020 5.8843 1.3323 17 7 9.4975 7.0413 1.4102 18 6 9.6422 7.9700 2.4061 19 1 9.8703 7.6515 3.4125 20 6 9.4955 9.3208 2.1221 21 7 9.5195 10.2047 3.0971 22 14 9.2642 9.8843 0.3562 23 1 7.8229 9.8268 0.0031 24 1 9.7536 11.2790 0.2134 25 1 10.0322 8.9948 -0.5518 26 6 8.4372 7.1869 0.4045 27 6 7.6240 5.8887 0.3414 28 6 8.5746 4.7161 0.0988 29 1 9.1319 4.8836 -0.8229 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.9499 -0.8400 0.0004 34 1 3.9717 0.3272 0.0013 35 1 3.9554 3.0081 0.8895 36 1 3.9561 3.0070 -0.8905 37 1 5.9873 1.5841 -0.8878 38 1 5.9860 1.5857 0.8920 39 1 9.1189 2.1731 -1.0411 40 1 7.8906 1.3589 -0.0413 41 1 10.2090 1.2486 0.9424 42 1 9.0295 2.0497 2.0070 43 1 10.9779 3.4718 0.1348 44 1 11.1615 3.3236 1.8999 45 1 11.0141 5.9566 0.4333 46 1 11.0436 5.8597 2.2131 47 1 9.4173 11.1487 2.8986 48 1 8.8839 7.3849 -0.5700 49 1 7.7828 8.0138 0.6802 50 1 7.0969 5.7421 1.2841 51 1 6.9033 5.9489 -0.4741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661549898.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:55 Heat of formation + Delta-G solvation = -28.934281 kcal Electronic energy + Delta-G solvation = -30663.463869 eV Core-core repulsion = 26598.851155 eV Total energy + Delta-G solvation = -4064.612714 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.73359 -40.10242 -38.06229 -36.09902 -35.59089 -34.75013 -33.13337 -32.64243 -31.35678 -30.32480 -29.63373 -27.03606 -25.77054 -25.12070 -23.36553 -22.95022 -21.99689 -21.27093 -20.55501 -19.74399 -19.30378 -18.50602 -17.15155 -16.63740 -16.32634 -16.21723 -15.89590 -15.49402 -14.98680 -14.65724 -14.64426 -14.49342 -14.28658 -14.09973 -14.01239 -13.37795 -13.34735 -13.07999 -12.72865 -12.67993 -12.58460 -12.46600 -12.38031 -12.01329 -11.84217 -11.69585 -11.45024 -11.12998 -11.07143 -10.88098 -10.57608 -10.48391 -10.41905 -10.26684 -10.09044 -9.60697 -9.57284 -9.49539 -9.14089 -8.82340 -8.53199 -8.40454 -6.68360 -5.88553 -3.41228 2.34090 2.64560 2.96830 3.03748 3.41217 3.51580 3.55116 3.92831 4.44466 4.49203 4.58674 4.67514 4.76263 4.82721 4.84742 4.87582 5.08171 5.14226 5.18453 5.19569 5.35023 5.37430 5.43779 5.45157 5.52149 5.67703 5.74752 5.75152 5.79825 5.90251 5.99739 6.08475 6.09876 6.16644 6.18592 6.20639 6.27309 6.37818 6.55419 6.59084 6.69552 6.80153 6.85015 6.93602 7.16072 7.49738 7.68435 8.16490 8.26684 8.33715 8.44269 9.02098 9.76885 10.20147 11.26763 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014240 B = 0.002735 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.781600 B =10234.204102 C =11637.262536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.753 5.753 3 C 0.700 3.300 4 O -0.583 6.583 5 N -0.747 5.747 6 C 0.152 3.848 7 C -0.154 4.154 8 C 0.516 3.484 9 O -0.519 6.519 10 N -0.608 5.608 11 C 0.108 3.892 12 C -0.133 4.133 13 C -0.114 4.114 14 C -0.116 4.116 15 H 0.073 0.927 16 C 0.159 3.841 17 N -0.609 5.609 18 C -0.264 4.264 19 H 0.079 0.921 20 C 0.030 3.970 21 N -0.915 5.915 22 Si 0.897 3.103 23 H -0.285 1.285 24 H -0.305 1.305 25 H -0.269 1.269 26 C 0.117 3.883 27 C -0.122 4.122 28 C 0.158 3.842 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.396 0.604 34 H 0.394 0.606 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.022 0.978 46 H 0.065 0.935 47 H 0.263 0.737 48 H 0.022 0.978 49 H 0.072 0.928 50 H 0.068 0.932 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 -28.671 -8.632 30.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.409 5.409 3 C 0.400 3.600 4 O -0.460 6.460 5 N -0.403 5.403 6 C 0.028 3.972 7 C -0.194 4.194 8 C 0.303 3.697 9 O -0.396 6.396 10 N -0.341 5.341 11 C -0.015 4.015 12 C -0.172 4.172 13 C -0.152 4.152 14 C -0.137 4.137 15 H 0.092 0.908 16 C 0.032 3.968 17 N -0.332 5.332 18 C -0.393 4.393 19 H 0.096 0.904 20 C -0.170 4.170 21 N -0.557 5.557 22 Si 0.727 3.273 23 H -0.212 1.212 24 H -0.233 1.233 25 H -0.194 1.194 26 C -0.009 4.009 27 C -0.161 4.161 28 C 0.056 3.944 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.229 0.771 34 H 0.227 0.773 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.040 0.960 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.040 0.960 49 H 0.090 0.910 50 H 0.087 0.913 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.950 -26.882 -8.578 29.316 hybrid contribution 0.419 -0.600 -0.845 1.118 sum -7.531 -27.483 -9.423 30.013 Atomic orbital electron populations 1.21394 0.78101 1.01877 1.02438 1.44915 1.07811 1.07047 1.81147 1.15948 0.81729 0.84316 0.78032 1.90983 1.67744 1.30263 1.57027 1.45094 1.04772 1.09765 1.80690 1.20911 0.87964 0.84016 1.04293 1.21877 0.95432 0.97612 1.04494 1.20212 0.82135 0.90621 0.76740 1.90817 1.67988 1.32101 1.48645 1.48185 1.05159 1.07986 1.72792 1.21726 0.94850 0.85934 0.99032 1.21904 0.97906 0.98711 0.98644 1.21518 0.97781 0.93835 1.02092 1.22135 0.97067 0.96030 0.98445 0.90817 1.20919 0.91288 0.85177 0.99382 1.44327 1.31153 1.25962 1.31803 1.18826 1.45945 0.85445 0.89095 0.90376 1.25576 0.98222 0.95981 0.97174 1.69754 1.53044 1.01586 1.31319 0.86750 0.77824 0.76533 0.86156 1.21168 1.23302 1.19428 1.21631 0.90546 0.96624 0.92087 1.22541 0.96694 0.93290 1.03620 1.21260 0.92798 0.82662 0.97709 0.91662 0.90716 0.92310 0.92343 0.77108 0.77296 0.90420 0.90535 0.88635 0.88477 0.91408 0.90209 0.91022 0.91568 0.91963 0.91481 0.95989 0.91604 0.92740 0.96029 0.91030 0.91350 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.65 10.70 59.85 0.64 1.29 16 2 N -0.75 -5.17 5.72 -72.07 -0.41 -5.58 16 3 C 0.70 7.75 8.57 -86.93 -0.74 7.01 16 4 O -0.58 -9.61 16.34 5.28 0.09 -9.52 16 5 N -0.75 -6.18 5.56 -65.22 -0.36 -6.54 16 6 C 0.15 1.65 4.96 -4.04 -0.02 1.63 16 7 C -0.15 -1.27 4.17 -27.88 -0.12 -1.39 16 8 C 0.52 6.86 7.59 -10.99 -0.08 6.78 16 9 O -0.52 -9.22 11.63 5.56 0.06 -9.15 16 10 N -0.61 -7.66 2.96 -165.36 -0.49 -8.15 16 11 C 0.11 0.89 6.34 -3.67 -0.02 0.87 16 12 C -0.13 -1.15 6.07 -26.59 -0.16 -1.32 16 13 C -0.11 -1.31 5.24 -26.75 -0.14 -1.45 16 14 C -0.12 -1.84 2.21 -90.42 -0.20 -2.04 16 15 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 16 C 0.16 3.12 5.86 -3.70 -0.02 3.10 16 17 N -0.61 -14.85 2.65 -172.26 -0.46 -15.31 16 18 C -0.26 -7.60 9.98 -15.06 -0.15 -7.75 16 19 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 20 C 0.03 0.90 5.40 -17.43 -0.09 0.81 16 21 N -0.91 -28.86 13.97 55.49 0.78 -28.09 16 22 Si 0.90 23.51 24.33 -169.99 -4.14 19.38 16 23 H -0.28 -7.34 6.66 56.52 0.38 -6.96 16 24 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 25 H -0.27 -6.85 6.36 56.52 0.36 -6.49 16 26 C 0.12 2.70 4.16 -3.68 -0.02 2.69 16 27 C -0.12 -2.44 3.81 -26.62 -0.10 -2.54 16 28 C 0.16 2.53 2.64 -67.74 -0.18 2.35 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.40 1.27 8.84 -40.82 -0.36 0.91 16 34 H 0.39 1.68 8.49 -40.82 -0.35 1.33 16 35 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 36 H 0.08 1.00 8.10 -51.93 -0.42 0.57 16 37 H 0.10 0.54 7.77 -51.93 -0.40 0.13 16 38 H 0.10 0.61 7.88 -51.93 -0.41 0.20 16 39 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 40 H 0.08 0.43 5.97 -51.93 -0.31 0.12 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 47 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 48 H 0.02 0.50 6.59 -51.93 -0.34 0.16 16 49 H 0.07 1.83 5.21 -51.93 -0.27 1.56 16 50 H 0.07 1.51 7.44 -51.93 -0.39 1.12 16 51 H 0.09 1.73 6.13 -51.93 -0.32 1.41 16 LS Contribution 385.39 15.07 5.81 5.81 Total: -1.00 -38.22 385.39 -9.21 -47.43 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -8.68 Total: -0.31 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -1.41 Total: 10.04 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -0.95 Total: -63.67 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.15 Total: -18.67 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -4.14 Total: 19.38 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.22 -9.21 -47.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661549898.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.497 kcal (2) G-P(sol) polarization free energy of solvation -38.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds