Wall clock time and date at job start Tue Mar 31 2020 21:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 119.99933 * 2 1 4 4 O 1.21595 * 120.00102 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00321 * 179.97438 * 3 2 1 6 6 C 1.46501 * 120.00479 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47128 * 179.97438 * 6 5 3 8 8 C 1.50703 * 109.46652 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00033 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99590 * 180.02562 * 8 7 6 11 11 C 1.47066 * 120.84708 * 4.42715 * 10 8 7 12 12 C 1.53125 * 109.04894 * 233.45137 * 11 10 8 13 13 C 1.53148 * 109.62181 * 306.00929 * 12 11 10 14 14 C 1.52817 * 109.26923 * 60.84060 * 13 12 11 15 15 H 1.08999 * 109.47149 * 58.00709 * 14 13 12 16 16 C 1.53061 * 110.34253 * 178.55203 * 14 13 12 17 17 N 1.47065 * 108.33623 * 175.43559 * 16 14 13 18 18 C 1.36935 * 120.47024 * 126.70890 * 17 16 14 19 19 H 1.07999 * 119.99948 * 319.32504 * 18 17 16 20 20 C 1.38816 * 120.00247 * 139.33539 * 18 17 16 21 21 N 1.31622 * 120.00094 * 174.12494 * 20 18 17 22 22 Si 1.86804 * 119.99911 * 354.12084 * 20 18 17 23 23 H 1.48501 * 109.46894 * 86.27235 * 22 20 18 24 24 H 1.48501 * 109.47068 * 206.27386 * 22 20 18 25 25 H 1.48500 * 109.46990 * 326.27191 * 22 20 18 26 26 C 1.46866 * 119.06164 * 306.67947 * 17 16 14 27 27 C 1.53318 * 109.09463 * 52.65891 * 26 17 16 28 28 C 1.46486 * 120.80204 * 184.40670 * 10 8 7 29 29 H 1.09001 * 109.72737 * 245.28672 * 28 10 8 30 30 H 1.09001 * 109.47236 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47741 * 300.00276 * 1 2 3 32 32 H 1.09002 * 109.47130 * 60.00451 * 1 2 3 33 33 H 0.96995 * 119.99582 * 179.97438 * 2 1 3 34 34 H 0.97009 * 119.99803 * 359.97438 * 5 3 2 35 35 H 1.08998 * 109.46728 * 60.00015 * 6 5 3 36 36 H 1.09005 * 109.46974 * 300.00190 * 6 5 3 37 37 H 1.08992 * 109.46944 * 60.00077 * 7 6 5 38 38 H 1.08993 * 109.47100 * 299.99840 * 7 6 5 39 39 H 1.09007 * 109.54410 * 113.58424 * 11 10 8 40 40 H 1.09001 * 109.61494 * 353.36931 * 11 10 8 41 41 H 1.08995 * 109.44921 * 185.96081 * 12 11 10 42 42 H 1.09004 * 109.44492 * 66.04790 * 12 11 10 43 43 H 1.09004 * 109.50068 * 300.90444 * 13 12 11 44 44 H 1.09003 * 109.50662 * 180.77950 * 13 12 11 45 45 H 1.09000 * 109.69069 * 55.72490 * 16 14 13 46 46 H 1.08998 * 109.69032 * 295.14556 * 16 14 13 47 47 H 0.97001 * 119.99874 * 179.97438 * 21 20 18 48 48 H 1.09006 * 109.53314 * 292.77672 * 26 17 16 49 49 H 1.08996 * 109.60075 * 172.58355 * 26 17 16 50 50 H 1.08997 * 109.56198 * 65.73154 * 27 26 17 51 51 H 1.09001 * 109.55454 * 185.94295 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1673 0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7234 2.1564 0.0014 8 6 6.4768 3.4616 0.0014 9 8 5.8703 4.5118 0.0000 10 7 7.8245 3.4616 0.0021 11 6 8.5786 2.2027 -0.0948 12 6 9.5744 2.1260 1.0660 13 6 10.4443 3.3864 1.0815 14 6 9.5528 4.6121 1.2771 15 1 8.9920 4.5089 2.2061 16 6 10.4020 5.8843 1.3323 17 7 9.4975 7.0413 1.4102 18 6 9.6422 7.9700 2.4061 19 1 9.8703 7.6515 3.4125 20 6 9.4955 9.3208 2.1221 21 7 9.5195 10.2047 3.0971 22 14 9.2642 9.8843 0.3562 23 1 7.8229 9.8268 0.0031 24 1 9.7536 11.2790 0.2134 25 1 10.0322 8.9948 -0.5518 26 6 8.4372 7.1869 0.4045 27 6 7.6240 5.8887 0.3414 28 6 8.5746 4.7161 0.0988 29 1 9.1319 4.8836 -0.8229 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.9499 -0.8400 0.0004 34 1 3.9717 0.3272 0.0013 35 1 3.9554 3.0081 0.8895 36 1 3.9561 3.0070 -0.8905 37 1 5.9873 1.5841 -0.8878 38 1 5.9860 1.5857 0.8920 39 1 9.1189 2.1731 -1.0411 40 1 7.8906 1.3589 -0.0413 41 1 10.2090 1.2486 0.9424 42 1 9.0295 2.0497 2.0070 43 1 10.9779 3.4718 0.1348 44 1 11.1615 3.3236 1.8999 45 1 11.0141 5.9566 0.4333 46 1 11.0436 5.8597 2.2131 47 1 9.4173 11.1487 2.8986 48 1 8.8839 7.3849 -0.5700 49 1 7.7828 8.0138 0.6802 50 1 7.0969 5.7421 1.2841 51 1 6.9033 5.9489 -0.4741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661549898.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:55 Heat of formation + Delta-G solvation = -60.528182 kcal Electronic energy + Delta-G solvation = -30664.833883 eV Core-core repulsion = 26598.851155 eV Total energy + Delta-G solvation = -4065.982728 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.82265 -40.96854 -39.35148 -37.50085 -36.41683 -35.58170 -34.61677 -34.09613 -32.82772 -31.57487 -31.01037 -27.78983 -27.23811 -26.26506 -24.59584 -24.23541 -23.48740 -22.09983 -21.69702 -21.25749 -20.19227 -19.34758 -18.84112 -17.93161 -17.42882 -17.17973 -16.92958 -16.70778 -16.43424 -15.95256 -15.56768 -15.50276 -15.43292 -15.20464 -15.15562 -14.78892 -14.65922 -14.25438 -14.08347 -13.87511 -13.71562 -13.64411 -13.48188 -13.24081 -13.02938 -12.88547 -12.68430 -12.46555 -12.29824 -12.22829 -12.08813 -11.84378 -11.70332 -11.67135 -11.51713 -11.40682 -11.25433 -10.72156 -10.46483 -10.10642 -9.81376 -9.48610 -8.71691 -8.21334 -5.70811 1.29274 1.32989 1.44351 1.57813 1.67896 2.11264 2.13785 2.37074 3.07752 3.27263 3.32064 3.61518 3.69243 3.80816 3.93392 4.03379 4.08717 4.16709 4.23820 4.29498 4.40840 4.46710 4.48130 4.50449 4.63330 4.65853 4.75415 4.78115 4.85154 4.86457 4.89344 4.92073 4.93612 4.99792 5.00884 5.15556 5.18277 5.28597 5.38385 5.39467 5.40155 5.48364 5.58781 5.69899 5.92115 6.00965 6.11518 6.53570 6.92184 7.12617 7.27101 7.55608 7.57930 8.02332 8.97405 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014240 B = 0.002735 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.781600 B =10234.204102 C =11637.262536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.734 5.734 3 C 0.690 3.310 4 O -0.647 6.647 5 N -0.726 5.726 6 C 0.159 3.841 7 C -0.132 4.132 8 C 0.504 3.496 9 O -0.578 6.578 10 N -0.605 5.605 11 C 0.100 3.900 12 C -0.128 4.128 13 C -0.110 4.110 14 C -0.104 4.104 15 H 0.045 0.955 16 C 0.153 3.847 17 N -0.623 5.623 18 C -0.253 4.253 19 H 0.042 0.958 20 C -0.029 4.029 21 N -0.961 5.961 22 Si 0.958 3.042 23 H -0.283 1.283 24 H -0.305 1.305 25 H -0.252 1.252 26 C 0.115 3.885 27 C -0.105 4.105 28 C 0.163 3.837 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.418 0.582 34 H 0.419 0.581 35 H 0.039 0.961 36 H 0.047 0.953 37 H 0.141 0.859 38 H 0.131 0.869 39 H 0.088 0.912 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.040 0.960 46 H 0.056 0.944 47 H 0.263 0.737 48 H 0.033 0.967 49 H 0.039 0.961 50 H 0.035 0.965 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.935 -34.146 -11.136 36.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.391 5.391 3 C 0.389 3.611 4 O -0.528 6.528 5 N -0.383 5.383 6 C 0.034 3.966 7 C -0.172 4.172 8 C 0.293 3.707 9 O -0.458 6.458 10 N -0.338 5.338 11 C -0.020 4.020 12 C -0.166 4.166 13 C -0.148 4.148 14 C -0.125 4.125 15 H 0.063 0.937 16 C 0.028 3.972 17 N -0.348 5.348 18 C -0.383 4.383 19 H 0.060 0.940 20 C -0.224 4.224 21 N -0.606 5.606 22 Si 0.786 3.214 23 H -0.210 1.210 24 H -0.234 1.234 25 H -0.176 1.176 26 C -0.011 4.011 27 C -0.144 4.144 28 C 0.060 3.940 29 H 0.094 0.906 30 H 0.136 0.864 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.255 0.745 34 H 0.257 0.743 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.159 0.841 38 H 0.149 0.851 39 H 0.106 0.894 40 H 0.140 0.860 41 H 0.127 0.873 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.050 0.950 49 H 0.057 0.943 50 H 0.054 0.946 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.805 -32.531 -11.102 35.040 hybrid contribution 0.048 1.009 0.027 1.011 sum -6.756 -31.522 -11.075 34.087 Atomic orbital electron populations 1.21534 0.77557 1.04178 1.00963 1.44770 1.08162 1.06678 1.79455 1.16322 0.82443 0.84513 0.77797 1.90946 1.69167 1.32884 1.59829 1.44733 1.03889 1.10021 1.79677 1.20601 0.90246 0.84585 1.01189 1.21782 0.92098 0.95130 1.08140 1.21122 0.82350 0.91787 0.75407 1.90797 1.69079 1.34700 1.51195 1.48234 1.05152 1.08293 1.72099 1.22171 0.95473 0.84628 0.99767 1.21906 0.97916 0.98211 0.98562 1.21514 0.97470 0.92788 1.03018 1.21928 0.97003 0.96348 0.97172 0.93680 1.21146 0.91340 0.85053 0.99691 1.44469 1.32691 1.26584 1.31086 1.18739 1.44186 0.86491 0.88933 0.94015 1.26269 0.98880 0.96174 1.01076 1.69894 1.55432 1.01874 1.33397 0.85750 0.77907 0.76040 0.81670 1.20995 1.23370 1.17600 1.21616 0.90161 0.97500 0.91794 1.22266 0.96594 0.93814 1.01771 1.20951 0.91986 0.83128 0.97969 0.90599 0.86427 0.93978 0.93780 0.74508 0.74326 0.94244 0.93421 0.84150 0.85074 0.89380 0.86039 0.87282 0.92356 0.90418 0.91217 0.94180 0.92530 0.92832 0.94954 0.94312 0.94628 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.10 10.70 127.77 1.37 2.47 16 2 N -0.73 -8.44 5.72 -500.19 -2.86 -11.30 16 3 C 0.69 14.68 8.57 179.06 1.53 16.22 16 4 O -0.65 -22.15 16.34 -4.01 -0.07 -22.22 16 5 N -0.73 -10.33 5.56 -478.53 -2.66 -12.99 16 6 C 0.16 3.32 4.96 86.38 0.43 3.75 16 7 C -0.13 -1.66 4.17 29.85 0.12 -1.53 16 8 C 0.50 12.47 7.59 87.66 0.67 13.14 16 9 O -0.58 -21.10 11.63 -3.03 -0.04 -21.14 16 10 N -0.61 -13.33 2.96 -795.46 -2.36 -15.69 16 11 C 0.10 1.04 6.34 86.31 0.55 1.59 16 12 C -0.13 -1.51 6.07 30.69 0.19 -1.32 16 13 C -0.11 -2.10 5.24 30.58 0.16 -1.94 16 14 C -0.10 -3.16 2.21 -10.67 -0.02 -3.19 16 15 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 16 C 0.15 5.95 5.86 86.29 0.51 6.46 16 17 N -0.62 -31.23 2.65 -698.90 -1.85 -33.08 16 18 C -0.25 -15.30 9.98 84.03 0.84 -14.46 16 19 H 0.04 2.77 8.06 -2.91 -0.02 2.75 16 20 C -0.03 -1.78 5.40 84.86 0.46 -1.32 16 21 N -0.96 -63.46 13.97 21.65 0.30 -63.16 16 22 Si 0.96 50.13 24.33 68.60 1.67 51.80 16 23 H -0.28 -14.61 6.66 99.48 0.66 -13.95 16 24 H -0.31 -15.87 7.11 99.48 0.71 -15.17 16 25 H -0.25 -12.32 6.36 99.48 0.63 -11.69 16 26 C 0.11 5.42 4.16 86.42 0.36 5.78 16 27 C -0.11 -4.31 3.81 30.66 0.12 -4.19 16 28 C 0.16 4.98 2.64 45.12 0.12 5.10 16 29 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 30 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.42 1.10 8.84 -92.71 -0.82 0.28 16 34 H 0.42 1.66 8.49 -92.70 -0.79 0.87 16 35 H 0.04 1.12 8.10 -2.39 -0.02 1.11 16 36 H 0.05 1.27 8.10 -2.38 -0.02 1.26 16 37 H 0.14 0.63 7.77 -2.39 -0.02 0.61 16 38 H 0.13 0.88 7.88 -2.39 -0.02 0.86 16 39 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.12 0.32 5.97 -2.39 -0.01 0.31 16 41 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 46 H 0.06 2.27 7.93 -2.39 -0.02 2.25 16 47 H 0.26 16.46 8.31 -92.71 -0.77 15.69 16 48 H 0.03 1.47 6.59 -2.38 -0.02 1.45 16 49 H 0.04 2.06 5.21 -2.39 -0.01 2.05 16 50 H 0.03 1.66 7.44 -2.39 -0.02 1.64 16 51 H 0.08 3.43 6.13 -2.39 -0.01 3.41 16 Total: -1.00 -95.00 385.39 -1.25 -96.26 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -0.78 Total: 4.99 kcal Atomic # 6 Polarization: 19.14 SS G_CDS: 7.39 Total: 26.53 kcal Atomic # 7 Polarization: -126.79 SS G_CDS: -9.43 Total: -136.22 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.10 Total: -43.36 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 1.67 Total: 51.80 kcal Total: -95.00 -1.25 -96.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661549898.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.728 kcal (2) G-P(sol) polarization free energy of solvation -95.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds