Wall clock time and date at job start Tue Mar 31 2020 20:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 120.00276 * 2 1 4 4 C 1.52994 * 109.47178 * 89.99859 * 3 2 1 5 5 N 1.46901 * 109.47155 * 179.97438 * 4 3 2 6 6 C 1.46903 * 111.00118 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47252 * 180.02562 * 6 5 4 8 8 O 1.21300 * 119.99623 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00351 * 180.02562 * 7 6 5 10 10 C 1.37094 * 120.00501 * 179.97438 * 9 7 6 11 11 H 1.08008 * 119.99794 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00453 * 180.02562 * 10 9 7 13 13 N 1.31407 * 119.99504 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00144 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47129 * 89.99713 * 14 12 10 16 16 H 1.48498 * 109.47126 * 209.99913 * 14 12 10 17 17 H 1.48501 * 109.46998 * 329.99877 * 14 12 10 18 18 C 1.34783 * 119.99658 * 179.97438 * 2 1 3 19 19 O 1.21284 * 119.99499 * 184.71598 * 18 2 1 20 20 C 1.50700 * 120.00124 * 4.71754 * 18 2 1 21 21 H 1.08997 * 109.57382 * 52.02343 * 20 18 2 22 22 C 1.53144 * 109.57865 * 291.76271 * 20 18 2 23 23 N 1.46903 * 109.36871 * 240.18886 * 22 20 18 24 24 C 1.46940 * 111.05859 * 62.00923 * 23 22 20 25 25 C 1.53680 * 109.30673 * 297.97672 * 24 23 22 26 26 C 1.53381 * 109.57674 * 172.28778 * 20 18 2 27 27 C 1.53398 * 108.59288 * 178.63874 * 26 20 18 28 28 C 1.46947 * 111.05731 * 298.00475 * 23 22 20 29 29 H 1.09005 * 109.46963 * 92.76966 * 1 2 3 30 30 H 1.08996 * 109.47567 * 212.77226 * 1 2 3 31 31 H 1.09001 * 109.46594 * 332.77445 * 1 2 3 32 32 H 1.09003 * 109.47082 * 329.99657 * 3 2 1 33 33 H 1.09006 * 109.46895 * 209.99729 * 3 2 1 34 34 H 1.09003 * 109.47279 * 59.99918 * 4 3 2 35 35 H 1.09001 * 109.47321 * 300.00179 * 4 3 2 36 36 H 1.00904 * 110.99574 * 56.04722 * 5 4 3 37 37 H 1.09004 * 109.47231 * 300.00508 * 6 5 4 38 38 H 1.08999 * 109.46897 * 60.00103 * 6 5 4 39 39 H 0.97002 * 119.99463 * 359.97438 * 9 7 6 40 40 H 0.97007 * 119.99851 * 179.97438 * 13 12 10 41 41 H 1.09007 * 109.48624 * 0.16040 * 22 20 18 42 42 H 1.08999 * 109.48622 * 120.19647 * 22 20 18 43 43 H 1.08999 * 109.49511 * 58.00003 * 24 23 22 44 44 H 1.08995 * 109.49069 * 178.08364 * 24 23 22 45 45 H 1.09002 * 109.71448 * 240.18890 * 25 24 23 46 46 H 1.08999 * 109.60482 * 119.83351 * 25 24 23 47 47 H 1.09000 * 110.11672 * 299.41446 * 26 20 18 48 48 H 1.08998 * 109.57887 * 181.32094 * 27 26 20 49 49 H 1.08999 * 109.46502 * 61.00979 * 27 26 20 50 50 H 1.09001 * 109.48655 * 181.92747 * 28 23 22 51 51 H 1.08997 * 109.49359 * 301.97884 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 1.4424 5 7 3.1876 2.9822 1.4424 6 6 3.4504 3.4385 2.8139 7 6 4.2037 4.7430 2.7737 8 8 4.4936 5.2433 1.7073 9 7 4.5561 5.3534 3.9224 10 6 5.2419 6.5400 3.8858 11 1 5.5001 6.9854 2.9364 12 6 5.6057 7.1690 5.0702 13 7 5.2920 6.6267 6.2253 14 14 6.5407 8.7854 5.0203 15 1 5.5766 9.9147 5.0070 16 1 7.4106 8.8912 6.2192 17 1 7.3783 8.8351 3.7950 18 6 2.1388 -1.1673 0.0005 19 8 3.3486 -1.1690 0.0869 20 6 1.3891 -2.4702 -0.1062 21 1 0.7188 -2.4365 -0.9650 22 6 0.5759 -2.7004 1.1708 23 7 1.0172 -3.9466 1.8115 24 6 2.4298 -3.8650 2.2077 25 6 3.2983 -3.6680 0.9552 26 6 2.3853 -3.6239 -0.2767 27 6 1.6014 -4.9405 -0.3486 28 6 0.7826 -5.1026 0.9352 29 1 -0.3633 -0.0497 -1.0265 30 1 -0.3634 -0.8640 0.5562 31 1 -0.3632 0.9138 0.4702 32 1 1.6085 2.0284 -0.5139 33 1 3.1500 1.1383 -0.5138 34 1 3.0416 0.9507 1.9563 35 1 1.5001 1.8407 1.9563 36 1 2.6921 3.6862 0.9161 37 1 2.5046 3.5813 3.3367 38 1 4.0457 2.6907 3.3377 39 1 4.3245 4.9531 4.7751 40 1 5.5463 7.0657 7.0522 41 1 0.7290 -1.8657 1.8549 42 1 -0.4822 -2.7752 0.9196 43 1 2.5696 -3.0224 2.8849 44 1 2.7206 -4.7877 2.7096 45 1 4.0000 -4.4967 0.8603 46 1 3.8488 -2.7307 1.0356 47 1 2.9698 -3.4832 -1.1859 48 1 2.2963 -5.7745 -0.4464 49 1 0.9317 -4.9180 -1.2083 50 1 1.0869 -6.0151 1.4478 51 1 -0.2769 -5.1612 0.6863 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663936996.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:12 Heat of formation + Delta-G solvation = -52.232686 kcal Electronic energy + Delta-G solvation = -29907.575889 eV Core-core repulsion = 25841.952881 eV Total energy + Delta-G solvation = -4065.623008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.69986 -39.30483 -38.25368 -36.43359 -35.07343 -33.81731 -32.61356 -32.02258 -31.20928 -31.17239 -29.53028 -27.18548 -26.11698 -24.43171 -23.59647 -23.39555 -23.19262 -22.08229 -19.68363 -19.14498 -18.00797 -17.87030 -17.59048 -16.90752 -16.76046 -16.25547 -16.03931 -15.64334 -15.29285 -15.15126 -14.51769 -14.14707 -13.81011 -13.60710 -13.57618 -13.48327 -13.36925 -13.29068 -13.11407 -12.59518 -12.55124 -12.47617 -12.38820 -12.29353 -12.12336 -11.97262 -11.83027 -11.51019 -11.48814 -11.38227 -11.11457 -10.96416 -10.70624 -10.55334 -10.37849 -10.20180 -9.63719 -9.49312 -8.96177 -8.58842 -8.43409 -8.05818 -7.94269 -6.39946 -3.80699 2.38022 2.67028 3.19190 3.27713 3.34154 3.57104 3.92645 4.01778 4.12688 4.16041 4.43195 4.43934 4.58514 4.65831 4.74213 4.77706 4.79127 4.90924 4.93758 4.99480 5.01568 5.06525 5.18075 5.19231 5.24602 5.28288 5.30503 5.33615 5.44676 5.47907 5.55784 5.60091 5.75901 5.79109 5.82836 5.86208 5.87302 5.94708 6.01534 6.16374 6.26943 6.33514 6.67965 6.68491 7.11787 7.19567 7.56963 7.65855 7.97740 8.08070 8.63107 9.19574 9.56082 10.07596 10.77839 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023385 B = 0.001881 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.042930 B =14882.965645 C =15329.363236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.616 5.616 3 C 0.118 3.882 4 C 0.048 3.952 5 N -0.665 5.665 6 C 0.053 3.947 7 C 0.441 3.559 8 O -0.583 6.583 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.518 3.482 19 O -0.522 6.522 20 C -0.138 4.138 21 H 0.096 0.904 22 C 0.063 3.937 23 N -0.528 5.528 24 C 0.051 3.949 25 C -0.166 4.166 26 C -0.066 4.066 27 C -0.151 4.151 28 C 0.051 3.949 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.025 0.975 36 H 0.348 0.652 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.082 0.918 48 H 0.069 0.931 49 H 0.065 0.935 50 H 0.077 0.923 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.134 -24.436 -10.442 30.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.350 5.350 3 C -0.005 4.005 4 C -0.082 4.082 5 N -0.298 5.298 6 C -0.079 4.079 7 C 0.227 3.773 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.306 3.694 19 O -0.398 6.398 20 C -0.161 4.161 21 H 0.114 0.886 22 C -0.066 4.066 23 N -0.248 5.248 24 C -0.077 4.077 25 C -0.204 4.204 26 C -0.085 4.085 27 C -0.190 4.190 28 C -0.077 4.077 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.167 0.833 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.080 0.920 46 H 0.122 0.878 47 H 0.100 0.900 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.095 0.905 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.931 -24.392 -10.523 29.996 hybrid contribution -0.225 1.029 0.108 1.059 sum -14.156 -23.364 -10.415 29.235 Atomic orbital electron populations 1.22003 0.79588 1.03806 1.02034 1.47833 1.06955 1.06134 1.74038 1.21424 0.98162 0.83794 0.97118 1.22258 0.96121 0.93233 0.96630 1.59949 1.51193 1.04923 1.13743 1.21652 0.99112 0.97206 0.89965 1.19795 0.85580 0.86924 0.85047 1.90522 1.59368 1.67192 1.29641 1.41859 1.50037 1.21379 1.06764 1.19708 1.30939 0.97653 0.94544 0.87907 1.25271 0.98197 0.99910 0.94648 1.69616 1.47171 1.40065 0.97480 0.85845 0.79246 0.81269 0.77856 1.20446 1.20923 1.19392 1.20580 0.87925 0.84961 0.75938 1.90644 1.14113 1.86622 1.48417 1.22105 0.99032 0.93254 1.01744 0.88593 1.22283 0.98472 0.93136 0.92675 1.62543 1.19667 1.02645 1.39904 1.22336 0.86064 1.02523 0.96768 1.22671 0.98595 1.04930 0.94223 1.20913 0.95433 0.92407 0.99770 1.22307 0.99737 0.97680 0.99264 1.22226 0.99883 0.93882 0.91714 0.92461 0.90573 0.90608 0.90502 0.88756 0.90763 0.95701 0.83305 0.93920 0.89579 0.77451 0.91884 0.90057 0.89639 0.90676 0.90672 0.92032 0.87813 0.90011 0.91204 0.91657 0.90485 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 9.91 59.85 0.59 0.99 16 2 N -0.62 -5.83 2.87 -181.57 -0.52 -6.35 16 3 C 0.12 1.35 5.62 -4.04 -0.02 1.33 16 4 C 0.05 0.64 6.01 -3.83 -0.02 0.62 16 5 N -0.67 -11.20 6.13 -115.06 -0.70 -11.91 16 6 C 0.05 0.98 6.17 -4.98 -0.03 0.95 16 7 C 0.44 10.71 7.82 -10.99 -0.09 10.63 16 8 O -0.58 -16.19 15.78 5.54 0.09 -16.11 16 9 N -0.56 -14.62 5.29 -10.96 -0.06 -14.67 16 10 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 11 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 14 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 C 0.52 5.64 6.49 -10.98 -0.07 5.57 16 19 O -0.52 -7.71 13.08 5.55 0.07 -7.64 16 20 C -0.14 -1.08 1.86 -91.50 -0.17 -1.25 16 21 H 0.10 0.59 7.96 -51.93 -0.41 0.18 16 22 C 0.06 0.45 3.93 -3.75 -0.01 0.43 16 23 N -0.53 -4.19 5.22 -233.94 -1.22 -5.41 16 24 C 0.05 0.45 6.12 -3.45 -0.02 0.43 16 25 C -0.17 -1.61 5.45 -26.18 -0.14 -1.75 16 26 C -0.07 -0.56 2.67 -90.01 -0.24 -0.80 16 27 C -0.15 -0.95 5.74 -26.46 -0.15 -1.10 16 28 C 0.05 0.32 6.09 -3.73 -0.02 0.30 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.34 4.45 -51.93 -0.23 0.11 16 31 H 0.08 0.40 8.05 -51.93 -0.42 -0.02 16 32 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 33 H 0.09 1.32 7.49 -51.93 -0.39 0.93 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.35 5.78 8.43 -39.29 -0.33 5.45 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.08 0.66 7.05 -51.92 -0.37 0.29 16 42 H 0.09 0.44 7.61 -51.93 -0.40 0.04 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.10 1.32 5.29 -51.93 -0.27 1.04 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 394.98 15.07 5.95 5.95 Total: -1.00 -33.65 394.98 -9.90 -43.56 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -8.57 Total: 12.22 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -0.64 Total: 8.20 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -1.78 Total: -62.48 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.16 Total: -23.75 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.65 -9.90 -43.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663936996.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.674 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds