Wall clock time and date at job start Tue Mar 31 2020 20:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 120.00276 * 2 1 4 4 C 1.52994 * 109.47178 * 89.99859 * 3 2 1 5 5 N 1.46901 * 109.47155 * 179.97438 * 4 3 2 6 6 C 1.46903 * 111.00118 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47252 * 180.02562 * 6 5 4 8 8 O 1.21300 * 119.99623 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00351 * 180.02562 * 7 6 5 10 10 C 1.37094 * 120.00501 * 179.97438 * 9 7 6 11 11 H 1.08008 * 119.99794 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00453 * 180.02562 * 10 9 7 13 13 N 1.31407 * 119.99504 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00144 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47129 * 89.99713 * 14 12 10 16 16 H 1.48498 * 109.47126 * 209.99913 * 14 12 10 17 17 H 1.48501 * 109.46998 * 329.99877 * 14 12 10 18 18 C 1.34783 * 119.99658 * 179.97438 * 2 1 3 19 19 O 1.21284 * 119.99499 * 184.71598 * 18 2 1 20 20 C 1.50700 * 120.00124 * 4.71754 * 18 2 1 21 21 H 1.08997 * 109.57382 * 52.02343 * 20 18 2 22 22 C 1.53144 * 109.57865 * 291.76271 * 20 18 2 23 23 N 1.46903 * 109.36871 * 240.18886 * 22 20 18 24 24 C 1.46940 * 111.05859 * 62.00923 * 23 22 20 25 25 C 1.53680 * 109.30673 * 297.97672 * 24 23 22 26 26 C 1.53381 * 109.57674 * 172.28778 * 20 18 2 27 27 C 1.53398 * 108.59288 * 178.63874 * 26 20 18 28 28 C 1.46947 * 111.05731 * 298.00475 * 23 22 20 29 29 H 1.09005 * 109.46963 * 92.76966 * 1 2 3 30 30 H 1.08996 * 109.47567 * 212.77226 * 1 2 3 31 31 H 1.09001 * 109.46594 * 332.77445 * 1 2 3 32 32 H 1.09003 * 109.47082 * 329.99657 * 3 2 1 33 33 H 1.09006 * 109.46895 * 209.99729 * 3 2 1 34 34 H 1.09003 * 109.47279 * 59.99918 * 4 3 2 35 35 H 1.09001 * 109.47321 * 300.00179 * 4 3 2 36 36 H 1.00904 * 110.99574 * 56.04722 * 5 4 3 37 37 H 1.09004 * 109.47231 * 300.00508 * 6 5 4 38 38 H 1.08999 * 109.46897 * 60.00103 * 6 5 4 39 39 H 0.97002 * 119.99463 * 359.97438 * 9 7 6 40 40 H 0.97007 * 119.99851 * 179.97438 * 13 12 10 41 41 H 1.09007 * 109.48624 * 0.16040 * 22 20 18 42 42 H 1.08999 * 109.48622 * 120.19647 * 22 20 18 43 43 H 1.08999 * 109.49511 * 58.00003 * 24 23 22 44 44 H 1.08995 * 109.49069 * 178.08364 * 24 23 22 45 45 H 1.09002 * 109.71448 * 240.18890 * 25 24 23 46 46 H 1.08999 * 109.60482 * 119.83351 * 25 24 23 47 47 H 1.09000 * 110.11672 * 299.41446 * 26 20 18 48 48 H 1.08998 * 109.57887 * 181.32094 * 27 26 20 49 49 H 1.08999 * 109.46502 * 61.00979 * 27 26 20 50 50 H 1.09001 * 109.48655 * 181.92747 * 28 23 22 51 51 H 1.08997 * 109.49359 * 301.97884 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 1.4424 5 7 3.1876 2.9822 1.4424 6 6 3.4504 3.4385 2.8139 7 6 4.2037 4.7430 2.7737 8 8 4.4936 5.2433 1.7073 9 7 4.5561 5.3534 3.9224 10 6 5.2419 6.5400 3.8858 11 1 5.5001 6.9854 2.9364 12 6 5.6057 7.1690 5.0702 13 7 5.2920 6.6267 6.2253 14 14 6.5407 8.7854 5.0203 15 1 5.5766 9.9147 5.0070 16 1 7.4106 8.8912 6.2192 17 1 7.3783 8.8351 3.7950 18 6 2.1388 -1.1673 0.0005 19 8 3.3486 -1.1690 0.0869 20 6 1.3891 -2.4702 -0.1062 21 1 0.7188 -2.4365 -0.9650 22 6 0.5759 -2.7004 1.1708 23 7 1.0172 -3.9466 1.8115 24 6 2.4298 -3.8650 2.2077 25 6 3.2983 -3.6680 0.9552 26 6 2.3853 -3.6239 -0.2767 27 6 1.6014 -4.9405 -0.3486 28 6 0.7826 -5.1026 0.9352 29 1 -0.3633 -0.0497 -1.0265 30 1 -0.3634 -0.8640 0.5562 31 1 -0.3632 0.9138 0.4702 32 1 1.6085 2.0284 -0.5139 33 1 3.1500 1.1383 -0.5138 34 1 3.0416 0.9507 1.9563 35 1 1.5001 1.8407 1.9563 36 1 2.6921 3.6862 0.9161 37 1 2.5046 3.5813 3.3367 38 1 4.0457 2.6907 3.3377 39 1 4.3245 4.9531 4.7751 40 1 5.5463 7.0657 7.0522 41 1 0.7290 -1.8657 1.8549 42 1 -0.4822 -2.7752 0.9196 43 1 2.5696 -3.0224 2.8849 44 1 2.7206 -4.7877 2.7096 45 1 4.0000 -4.4967 0.8603 46 1 3.8488 -2.7307 1.0356 47 1 2.9698 -3.4832 -1.1859 48 1 2.2963 -5.7745 -0.4464 49 1 0.9317 -4.9180 -1.2083 50 1 1.0869 -6.0151 1.4478 51 1 -0.2769 -5.1612 0.6863 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663936996.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:11 Heat of formation + Delta-G solvation = -78.852220 kcal Electronic energy + Delta-G solvation = -29908.730198 eV Core-core repulsion = 25841.952881 eV Total energy + Delta-G solvation = -4066.777318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.37807 -40.27040 -39.97430 -37.52925 -36.31762 -35.76233 -33.34451 -33.24394 -32.70771 -31.79848 -30.61733 -28.11917 -27.41349 -25.91902 -24.49778 -24.12587 -23.82362 -23.11120 -21.19486 -20.34126 -19.91467 -18.67571 -18.29325 -17.92138 -17.60851 -17.35866 -17.11373 -16.84706 -16.49537 -16.17240 -16.03023 -15.77946 -15.33936 -14.83413 -14.73577 -14.25204 -14.12194 -14.02541 -13.90907 -13.83761 -13.52756 -13.39393 -13.15661 -13.12570 -13.06498 -12.99273 -12.89907 -12.83871 -12.72669 -12.50826 -12.43874 -12.13500 -12.09741 -12.00862 -11.52984 -11.38599 -11.10844 -10.45032 -10.42038 -10.04602 -9.72358 -9.40869 -9.20542 -8.48717 -5.97924 1.36843 1.40700 1.53876 1.57448 1.89722 2.00952 2.28381 2.94296 2.99825 3.18017 3.38318 3.51683 3.56958 3.80748 3.91825 4.02081 4.04655 4.09440 4.20992 4.25605 4.26899 4.31473 4.32848 4.37894 4.41115 4.43680 4.46974 4.53450 4.59986 4.68634 4.78247 4.81450 4.91046 4.95821 4.96497 5.04213 5.07622 5.14378 5.18774 5.20701 5.38597 5.40023 5.52380 5.81542 6.03505 6.05730 6.13959 6.33707 6.40615 6.56843 7.09589 7.18105 7.52296 8.07313 8.68702 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023385 B = 0.001881 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.042930 B =14882.965645 C =15329.363236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.613 5.613 3 C 0.124 3.876 4 C 0.059 3.941 5 N -0.683 5.683 6 C 0.068 3.932 7 C 0.437 3.563 8 O -0.622 6.622 9 N -0.572 5.572 10 C -0.335 4.335 11 H 0.079 0.921 12 C -0.014 4.014 13 N -0.920 5.920 14 Si 0.995 3.005 15 H -0.268 1.268 16 H -0.270 1.270 17 H -0.274 1.274 18 C 0.509 3.491 19 O -0.572 6.572 20 C -0.128 4.128 21 H 0.122 0.878 22 C 0.065 3.935 23 N -0.534 5.534 24 C 0.056 3.944 25 C -0.164 4.164 26 C -0.069 4.069 27 C -0.142 4.142 28 C 0.051 3.949 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.349 0.651 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.068 0.932 42 H 0.118 0.882 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.083 0.917 50 H 0.080 0.920 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.852 -25.406 -10.507 32.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.345 5.345 3 C 0.000 4.000 4 C -0.071 4.071 5 N -0.316 5.316 6 C -0.064 4.064 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.209 5.209 10 C -0.465 4.465 11 H 0.097 0.903 12 C -0.214 4.214 13 N -0.561 5.561 14 Si 0.819 3.181 15 H -0.194 1.194 16 H -0.195 1.195 17 H -0.199 1.199 18 C 0.299 3.701 19 O -0.451 6.451 20 C -0.151 4.151 21 H 0.140 0.860 22 C -0.064 4.064 23 N -0.254 5.254 24 C -0.073 4.073 25 C -0.203 4.203 26 C -0.089 4.089 27 C -0.181 4.181 28 C -0.077 4.077 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.169 0.831 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.230 0.770 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.136 0.864 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.101 0.899 50 H 0.098 0.902 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.708 -25.388 -10.574 32.180 hybrid contribution 0.625 1.298 0.115 1.445 sum -16.084 -24.090 -10.459 30.796 Atomic orbital electron populations 1.22291 0.76775 1.05102 1.03752 1.47923 1.08581 1.04904 1.73105 1.21227 0.97625 0.85410 0.95726 1.22186 0.96223 0.90764 0.97932 1.59893 1.52765 1.06139 1.12842 1.21485 0.99584 0.93871 0.91482 1.20798 0.84657 0.88180 0.83898 1.90488 1.60757 1.68715 1.30936 1.41926 1.50307 1.21164 1.07489 1.19684 1.33211 0.99347 0.94232 0.90256 1.26088 0.98411 1.02948 0.93946 1.69676 1.47230 1.41213 0.97943 0.84894 0.78073 0.77231 0.77922 1.19357 1.19514 1.19871 1.21258 0.87586 0.86303 0.74999 1.90640 1.16447 1.87382 1.50654 1.22119 0.98799 0.90886 1.03310 0.85966 1.22367 0.99874 0.92436 0.91678 1.62564 1.18410 1.03630 1.40758 1.22233 0.86973 1.02117 0.95955 1.22582 0.98967 1.02972 0.95801 1.20910 0.95592 0.94286 0.98128 1.22257 0.99712 0.95996 1.00151 1.22333 1.01013 0.93190 0.91150 0.90512 0.88935 0.89701 0.88230 0.92006 0.92853 0.93275 0.83142 0.91061 0.88749 0.76964 0.91228 0.91334 0.86447 0.92438 0.89901 0.92087 0.91305 0.91760 0.91160 0.89875 0.90166 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 9.91 127.77 1.27 1.78 16 2 N -0.61 -10.87 2.87 -846.74 -2.43 -13.30 16 3 C 0.12 2.79 5.62 86.38 0.49 3.28 16 4 C 0.06 1.53 6.01 86.30 0.52 2.05 16 5 N -0.68 -22.93 6.13 -517.93 -3.17 -26.11 16 6 C 0.07 2.49 6.17 85.56 0.53 3.02 16 7 C 0.44 21.61 7.82 87.66 0.69 22.30 16 8 O -0.62 -35.57 15.78 -3.09 -0.05 -35.61 16 9 N -0.57 -30.23 5.29 -306.98 -1.62 -31.85 16 10 C -0.34 -19.46 9.68 84.04 0.81 -18.65 16 11 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 12 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 13 N -0.92 -50.40 13.05 21.66 0.28 -50.12 16 14 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 15 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 C 0.51 11.06 6.49 87.66 0.57 11.63 16 19 O -0.57 -18.07 13.08 -3.04 -0.04 -18.11 16 20 C -0.13 -1.79 1.86 -11.36 -0.02 -1.81 16 21 H 0.12 1.08 7.96 -2.39 -0.02 1.06 16 22 C 0.07 0.75 3.93 86.35 0.34 1.09 16 23 N -0.53 -7.41 5.22 -894.05 -4.67 -12.08 16 24 C 0.06 0.98 6.12 86.52 0.53 1.51 16 25 C -0.16 -3.35 5.45 30.95 0.17 -3.18 16 26 C -0.07 -1.14 2.67 -10.40 -0.03 -1.17 16 27 C -0.14 -1.45 5.74 30.77 0.18 -1.28 16 28 C 0.05 0.48 6.09 86.34 0.53 1.01 16 29 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.09 0.48 4.45 -2.39 -0.01 0.46 16 31 H 0.08 0.59 8.05 -2.39 -0.02 0.57 16 32 H 0.10 1.78 8.07 -2.39 -0.02 1.76 16 33 H 0.06 1.82 7.49 -2.38 -0.02 1.80 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.35 11.52 8.43 -89.69 -0.76 10.76 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.09 3.30 8.14 -2.39 -0.02 3.29 16 39 H 0.40 19.89 7.90 -92.71 -0.73 19.16 16 40 H 0.28 14.23 8.31 -92.70 -0.77 13.45 16 41 H 0.07 0.99 7.05 -2.38 -0.02 0.97 16 42 H 0.12 0.65 7.61 -2.39 -0.02 0.63 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.07 1.93 5.29 -2.39 -0.01 1.92 16 47 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -76.25 394.98 -3.19 -79.44 By element: Atomic # 1 Polarization: 41.40 SS G_CDS: -0.54 Total: 40.85 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: 7.02 Total: 21.27 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -11.61 Total: -133.45 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: -0.09 Total: -53.72 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -76.25 -3.19 -79.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663936996.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.592 kcal (2) G-P(sol) polarization free energy of solvation -76.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds