Wall clock time and date at job start Tue Mar 31 2020 20:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 120.00356 * 2 1 4 4 C 1.53002 * 109.47024 * 270.00481 * 3 2 1 5 5 N 1.46898 * 109.46837 * 179.97438 * 4 3 2 6 6 C 1.46902 * 111.00379 * 294.29982 * 5 4 3 7 7 C 1.53232 * 109.34475 * 172.74650 * 6 5 4 8 8 N 1.47086 * 108.52189 * 53.83094 * 7 6 5 9 9 C 1.36931 * 120.88034 * 128.83435 * 8 7 6 10 10 H 1.08002 * 120.00097 * 205.96328 * 9 8 7 11 11 C 1.38813 * 120.00386 * 25.97164 * 9 8 7 12 12 N 1.31622 * 119.99697 * 21.34051 * 11 9 8 13 13 Si 1.86799 * 120.00371 * 201.34014 * 11 9 8 14 14 H 1.48497 * 109.47051 * 89.99676 * 13 11 9 15 15 H 1.48498 * 109.47407 * 209.99846 * 13 11 9 16 16 H 1.48500 * 109.46718 * 329.99849 * 13 11 9 17 17 C 1.47079 * 118.23440 * 308.81548 * 8 7 6 18 18 C 1.46903 * 111.00158 * 170.00063 * 5 4 3 19 19 C 1.34774 * 119.99307 * 180.02562 * 2 1 3 20 20 O 1.21358 * 119.99522 * 181.55029 * 19 2 1 21 21 C 1.49444 * 120.00584 * 1.54713 * 19 2 1 22 22 O 1.21348 * 120.00206 * 355.11604 * 21 19 2 23 23 N 1.34778 * 120.00335 * 175.39063 * 21 19 2 24 24 C 1.46493 * 120.00416 * 179.72646 * 23 21 19 25 25 C 1.53004 * 109.47580 * 180.02562 * 24 23 21 26 26 C 1.52997 * 117.49589 * 243.62165 * 25 24 23 27 27 C 1.52995 * 117.49992 * 174.99768 * 25 24 23 28 28 H 1.09004 * 109.47019 * 263.91444 * 1 2 3 29 29 H 1.09003 * 109.46960 * 23.91205 * 1 2 3 30 30 H 1.08992 * 109.47533 * 143.91546 * 1 2 3 31 31 H 1.09005 * 109.46938 * 30.00133 * 3 2 1 32 32 H 1.08996 * 109.47038 * 150.00093 * 3 2 1 33 33 H 1.08996 * 109.47095 * 299.99531 * 4 3 2 34 34 H 1.08996 * 109.47530 * 59.99913 * 4 3 2 35 35 H 1.09005 * 109.49286 * 292.71107 * 6 5 4 36 36 H 1.09002 * 109.48790 * 52.78373 * 6 5 4 37 37 H 1.08996 * 109.62871 * 294.12312 * 7 6 5 38 38 H 1.08999 * 109.63249 * 173.53737 * 7 6 5 39 39 H 0.97001 * 119.99815 * 179.97438 * 12 11 9 40 40 H 1.08992 * 109.63125 * 291.47318 * 17 8 7 41 41 H 1.09006 * 109.78456 * 170.98701 * 17 8 7 42 42 H 1.09000 * 109.48885 * 307.21394 * 18 5 4 43 43 H 1.08999 * 109.49372 * 67.28951 * 18 5 4 44 44 H 0.97005 * 119.99993 * 359.72583 * 23 21 19 45 45 H 1.09004 * 109.47168 * 300.00312 * 24 23 21 46 46 H 1.08999 * 109.47329 * 60.00071 * 24 23 21 47 47 H 1.08994 * 115.54687 * 29.32614 * 25 24 23 48 48 H 1.08996 * 117.50294 * 359.97438 * 26 25 24 49 49 H 1.09007 * 117.49426 * 145.02136 * 26 25 24 50 50 H 1.09006 * 117.49934 * 214.97681 * 27 25 24 51 51 H 1.09002 * 117.50226 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4525 1.7103 -1.4425 5 7 3.1865 2.9828 -1.4425 6 6 2.3669 4.0634 -0.8782 7 6 3.2237 5.3250 -0.7283 8 7 3.8417 5.6272 -2.0284 9 6 3.7459 6.8776 -2.5783 10 1 3.8093 7.0028 -3.6492 11 6 3.5674 7.9842 -1.7596 12 7 3.9011 7.9226 -0.4879 13 14 2.8537 9.5609 -2.4625 14 1 1.3746 9.5360 -2.3318 15 1 3.3969 10.7253 -1.7181 16 1 3.2220 9.6746 -3.8966 17 6 4.5657 4.5509 -2.7216 18 6 3.6560 3.3198 -2.7931 19 6 2.1388 -1.1673 -0.0005 20 8 3.3520 -1.1675 0.0279 21 6 1.3919 -2.4612 -0.0360 22 8 0.1800 -2.4642 0.0251 23 7 2.0646 -3.6253 -0.1304 24 6 1.3329 -4.8940 -0.1592 25 6 2.3256 -6.0531 -0.2688 26 6 2.2652 -6.9180 -1.5293 27 6 1.7633 -7.4741 -0.1953 28 1 -0.3633 -0.1090 1.0219 29 1 -0.3633 0.9395 -0.4166 30 1 -0.3634 -0.8304 -0.6052 31 1 1.6085 2.0283 0.5139 32 1 3.1499 1.1382 0.5138 33 1 3.0415 0.9507 -1.9564 34 1 1.5001 1.8407 -1.9563 35 1 1.5288 4.2699 -1.5439 36 1 1.9899 3.7615 0.0990 37 1 4.0015 5.1531 0.0157 38 1 2.5951 6.1599 -0.4189 39 1 3.7768 8.6960 0.0842 40 1 5.4724 4.3046 -2.1693 41 1 4.8271 4.8721 -3.7300 42 1 4.2138 2.4787 -3.2046 43 1 2.8000 3.5366 -3.4321 44 1 3.0335 -3.6230 -0.1792 45 1 0.7518 -4.9992 0.7571 46 1 0.6621 -4.9072 -1.0182 47 1 3.3056 -5.8761 0.1741 48 1 1.5181 -6.6616 -2.2804 49 1 3.2059 -7.3102 -1.9161 50 1 2.3738 -8.2322 0.2957 51 1 0.6862 -7.5834 -0.0692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664781461.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:55 Heat of formation + Delta-G solvation = 7.763693 kcal Electronic energy + Delta-G solvation = -29375.540292 eV Core-core repulsion = 25312.518922 eV Total energy + Delta-G solvation = -4063.021370 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.04054 -39.10479 -38.14932 -37.90541 -36.25037 -34.65795 -34.12791 -31.57856 -29.94783 -29.50652 -28.28892 -26.93409 -26.15053 -24.08075 -22.99375 -22.88248 -22.47245 -21.57911 -21.28731 -19.85442 -19.10376 -17.97014 -17.35685 -16.81807 -16.59436 -16.31876 -15.84304 -15.42975 -14.93792 -14.82453 -14.57490 -14.47708 -14.26488 -13.91956 -13.72701 -13.52366 -13.45143 -13.33856 -13.16358 -12.90483 -12.70257 -12.31396 -12.07570 -12.01802 -11.91066 -11.44005 -11.40446 -11.11460 -11.03782 -10.98073 -10.78290 -10.73335 -10.41650 -10.30126 -10.05714 -9.73496 -9.66643 -9.61327 -9.52955 -8.89943 -8.47898 -7.83779 -6.67530 -5.78203 -3.16071 1.20145 2.04618 2.96890 3.08837 3.30800 3.38765 3.46099 3.47296 4.04933 4.05836 4.33506 4.42365 4.42976 4.52789 4.65078 4.96133 5.04290 5.11641 5.11896 5.16616 5.17445 5.35156 5.37646 5.42320 5.44736 5.53148 5.56808 5.57027 5.69325 5.74351 5.89360 5.93691 5.97688 6.05377 6.12590 6.20778 6.24290 6.34269 6.53289 6.68767 6.71047 6.95357 7.01473 7.22534 7.44779 7.57971 7.61696 7.68929 7.76157 7.83403 8.43198 9.21423 9.85918 10.44870 11.30894 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.031087 B = 0.001808 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.495945 B =15479.741963 C =15865.486329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.581 5.581 3 C 0.114 3.886 4 C 0.044 3.956 5 N -0.529 5.529 6 C 0.032 3.968 7 C 0.178 3.822 8 N -0.594 5.594 9 C -0.254 4.254 10 H 0.066 0.934 11 C 0.003 3.997 12 N -0.899 5.899 13 Si 0.899 3.101 14 H -0.288 1.288 15 H -0.292 1.292 16 H -0.279 1.279 17 C 0.149 3.851 18 C 0.047 3.953 19 C 0.502 3.498 20 O -0.517 6.517 21 C 0.509 3.491 22 O -0.516 6.516 23 N -0.699 5.699 24 C 0.149 3.851 25 C -0.175 4.175 26 C -0.176 4.176 27 C -0.168 4.168 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.028 0.972 35 H 0.026 0.974 36 H 0.062 0.938 37 H 0.028 0.972 38 H 0.084 0.916 39 H 0.254 0.746 40 H 0.026 0.974 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.027 0.973 44 H 0.414 0.586 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.114 0.886 48 H 0.098 0.902 49 H 0.098 0.902 50 H 0.099 0.901 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.893 -28.483 1.364 29.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.315 5.315 3 C -0.008 4.008 4 C -0.086 4.086 5 N -0.255 5.255 6 C -0.097 4.097 7 C 0.052 3.948 8 N -0.318 5.318 9 C -0.384 4.384 10 H 0.084 0.916 11 C -0.196 4.196 12 N -0.543 5.543 13 Si 0.729 3.271 14 H -0.215 1.215 15 H -0.218 1.218 16 H -0.205 1.205 17 C 0.022 3.978 18 C -0.082 4.082 19 C 0.284 3.716 20 O -0.393 6.393 21 C 0.290 3.710 22 O -0.392 6.392 23 N -0.353 5.353 24 C 0.026 3.974 25 C -0.193 4.193 26 C -0.213 4.213 27 C -0.206 4.206 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.046 0.954 44 H 0.251 0.749 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.132 0.868 48 H 0.116 0.884 49 H 0.116 0.884 50 H 0.117 0.883 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.713 -28.370 1.835 29.211 hybrid contribution -0.717 0.942 -0.809 1.434 sum -7.430 -27.428 1.026 28.435 Atomic orbital electron populations 1.22369 0.77696 1.04167 1.03353 1.47741 1.08297 1.05453 1.69984 1.21716 0.98384 0.82755 0.97977 1.22349 0.96861 0.93425 0.95917 1.61876 1.38999 1.01674 1.22917 1.22972 0.95557 0.93604 0.97580 1.20817 0.94529 0.92107 0.87319 1.44127 1.59668 1.07246 1.20742 1.19187 1.45048 0.82971 0.91152 0.91609 1.24971 1.01111 0.97365 0.96184 1.70091 1.48672 1.30088 1.05456 0.86336 0.79186 0.83145 0.78423 1.21540 1.21797 1.20470 1.20972 0.92951 0.87392 0.96470 1.22609 0.98579 0.99027 0.88022 1.20019 0.87551 0.85052 0.78998 1.90794 1.13074 1.87052 1.48334 1.20221 0.87621 0.85415 0.77741 1.90688 1.13475 1.86964 1.48089 1.45770 1.11771 1.05012 1.72763 1.21006 0.93318 0.80188 1.02848 1.22459 1.01033 0.91819 1.03994 1.23120 1.03516 1.03440 0.91198 1.22970 1.01720 0.95114 1.00794 0.92020 0.91260 0.88056 0.89541 0.88402 0.91106 0.95378 0.95598 0.92019 0.95389 0.89798 0.93644 0.95561 0.92572 0.92005 0.95430 0.74926 0.90445 0.90709 0.86822 0.88386 0.88396 0.88262 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 9.48 59.85 0.57 1.23 16 2 N -0.58 -7.03 2.87 -182.09 -0.52 -7.56 16 3 C 0.11 1.52 5.32 -4.04 -0.02 1.50 16 4 C 0.04 0.65 5.29 -3.82 -0.02 0.63 16 5 N -0.53 -9.53 4.63 -234.32 -1.08 -10.62 16 6 C 0.03 0.61 5.46 -3.70 -0.02 0.59 16 7 C 0.18 4.30 5.45 -3.60 -0.02 4.28 16 8 N -0.59 -15.19 3.04 -172.02 -0.52 -15.71 16 9 C -0.25 -7.05 9.61 -15.06 -0.14 -7.20 16 10 H 0.07 1.80 7.91 -52.49 -0.42 1.38 16 11 C 0.00 0.07 4.82 -17.43 -0.08 -0.01 16 12 N -0.90 -26.24 11.40 55.49 0.63 -25.61 16 13 Si 0.90 21.74 29.60 -169.99 -5.03 16.71 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 17 C 0.15 3.23 6.69 -3.60 -0.02 3.20 16 18 C 0.05 0.87 5.62 -3.70 -0.02 0.85 16 19 C 0.50 6.33 7.74 -11.59 -0.09 6.24 16 20 O -0.52 -7.65 16.05 5.49 0.09 -7.56 16 21 C 0.51 5.53 7.77 -11.59 -0.09 5.44 16 22 O -0.52 -6.19 13.17 5.50 0.07 -6.11 16 23 N -0.70 -5.79 5.55 -60.73 -0.34 -6.13 16 24 C 0.15 0.97 5.95 -4.04 -0.02 0.95 16 25 C -0.17 -0.86 5.85 -90.62 -0.53 -1.39 16 26 C -0.18 -0.79 10.18 -26.73 -0.27 -1.06 16 27 C -0.17 -0.69 10.25 -26.73 -0.27 -0.96 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.63 8.03 -51.93 -0.42 0.21 16 30 H 0.10 1.06 5.47 -51.93 -0.28 0.77 16 31 H 0.09 1.09 6.33 -51.93 -0.33 0.76 16 32 H 0.10 1.47 7.40 -51.93 -0.38 1.08 16 33 H 0.07 1.08 7.97 -51.93 -0.41 0.66 16 34 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 1.04 6.16 -51.93 -0.32 0.72 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 2.22 6.22 -51.93 -0.32 1.90 16 39 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 42 H 0.06 1.01 7.99 -51.93 -0.41 0.59 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.41 3.10 7.88 -40.82 -0.32 2.77 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.51 7.88 -51.93 -0.41 0.10 16 47 H 0.11 0.52 8.04 -51.93 -0.42 0.10 16 48 H 0.10 0.43 8.03 -51.93 -0.42 0.02 16 49 H 0.10 0.39 8.14 -51.92 -0.42 -0.03 16 50 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 406.08 15.07 6.12 6.12 Total: -1.00 -32.02 406.08 -10.30 -42.31 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.64 Total: -0.14 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: -1.07 Total: 14.30 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -1.83 Total: -65.63 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.16 Total: -13.67 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.02 -10.30 -42.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664781461.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.077 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds