Wall clock time and date at job start Tue Mar 31 2020 20:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 120.00356 * 2 1 4 4 C 1.53002 * 109.47024 * 270.00481 * 3 2 1 5 5 N 1.46898 * 109.46837 * 179.97438 * 4 3 2 6 6 C 1.46902 * 111.00379 * 294.29982 * 5 4 3 7 7 C 1.53232 * 109.34475 * 172.74650 * 6 5 4 8 8 N 1.47086 * 108.52189 * 53.83094 * 7 6 5 9 9 C 1.36931 * 120.88034 * 128.83435 * 8 7 6 10 10 H 1.08002 * 120.00097 * 205.96328 * 9 8 7 11 11 C 1.38813 * 120.00386 * 25.97164 * 9 8 7 12 12 N 1.31622 * 119.99697 * 21.34051 * 11 9 8 13 13 Si 1.86799 * 120.00371 * 201.34014 * 11 9 8 14 14 H 1.48497 * 109.47051 * 89.99676 * 13 11 9 15 15 H 1.48498 * 109.47407 * 209.99846 * 13 11 9 16 16 H 1.48500 * 109.46718 * 329.99849 * 13 11 9 17 17 C 1.47079 * 118.23440 * 308.81548 * 8 7 6 18 18 C 1.46903 * 111.00158 * 170.00063 * 5 4 3 19 19 C 1.34774 * 119.99307 * 180.02562 * 2 1 3 20 20 O 1.21358 * 119.99522 * 181.55029 * 19 2 1 21 21 C 1.49444 * 120.00584 * 1.54713 * 19 2 1 22 22 O 1.21348 * 120.00206 * 355.11604 * 21 19 2 23 23 N 1.34778 * 120.00335 * 175.39063 * 21 19 2 24 24 C 1.46493 * 120.00416 * 179.72646 * 23 21 19 25 25 C 1.53004 * 109.47580 * 180.02562 * 24 23 21 26 26 C 1.52997 * 117.49589 * 243.62165 * 25 24 23 27 27 C 1.52995 * 117.49992 * 174.99768 * 25 24 23 28 28 H 1.09004 * 109.47019 * 263.91444 * 1 2 3 29 29 H 1.09003 * 109.46960 * 23.91205 * 1 2 3 30 30 H 1.08992 * 109.47533 * 143.91546 * 1 2 3 31 31 H 1.09005 * 109.46938 * 30.00133 * 3 2 1 32 32 H 1.08996 * 109.47038 * 150.00093 * 3 2 1 33 33 H 1.08996 * 109.47095 * 299.99531 * 4 3 2 34 34 H 1.08996 * 109.47530 * 59.99913 * 4 3 2 35 35 H 1.09005 * 109.49286 * 292.71107 * 6 5 4 36 36 H 1.09002 * 109.48790 * 52.78373 * 6 5 4 37 37 H 1.08996 * 109.62871 * 294.12312 * 7 6 5 38 38 H 1.08999 * 109.63249 * 173.53737 * 7 6 5 39 39 H 0.97001 * 119.99815 * 179.97438 * 12 11 9 40 40 H 1.08992 * 109.63125 * 291.47318 * 17 8 7 41 41 H 1.09006 * 109.78456 * 170.98701 * 17 8 7 42 42 H 1.09000 * 109.48885 * 307.21394 * 18 5 4 43 43 H 1.08999 * 109.49372 * 67.28951 * 18 5 4 44 44 H 0.97005 * 119.99993 * 359.72583 * 23 21 19 45 45 H 1.09004 * 109.47168 * 300.00312 * 24 23 21 46 46 H 1.08999 * 109.47329 * 60.00071 * 24 23 21 47 47 H 1.08994 * 115.54687 * 29.32614 * 25 24 23 48 48 H 1.08996 * 117.50294 * 359.97438 * 26 25 24 49 49 H 1.09007 * 117.49426 * 145.02136 * 26 25 24 50 50 H 1.09006 * 117.49934 * 214.97681 * 27 25 24 51 51 H 1.09002 * 117.50226 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4525 1.7103 -1.4425 5 7 3.1865 2.9828 -1.4425 6 6 2.3669 4.0634 -0.8782 7 6 3.2237 5.3250 -0.7283 8 7 3.8417 5.6272 -2.0284 9 6 3.7459 6.8776 -2.5783 10 1 3.8093 7.0028 -3.6492 11 6 3.5674 7.9842 -1.7596 12 7 3.9011 7.9226 -0.4879 13 14 2.8537 9.5609 -2.4625 14 1 1.3746 9.5360 -2.3318 15 1 3.3969 10.7253 -1.7181 16 1 3.2220 9.6746 -3.8966 17 6 4.5657 4.5509 -2.7216 18 6 3.6560 3.3198 -2.7931 19 6 2.1388 -1.1673 -0.0005 20 8 3.3520 -1.1675 0.0279 21 6 1.3919 -2.4612 -0.0360 22 8 0.1800 -2.4642 0.0251 23 7 2.0646 -3.6253 -0.1304 24 6 1.3329 -4.8940 -0.1592 25 6 2.3256 -6.0531 -0.2688 26 6 2.2652 -6.9180 -1.5293 27 6 1.7633 -7.4741 -0.1953 28 1 -0.3633 -0.1090 1.0219 29 1 -0.3633 0.9395 -0.4166 30 1 -0.3634 -0.8304 -0.6052 31 1 1.6085 2.0283 0.5139 32 1 3.1499 1.1382 0.5138 33 1 3.0415 0.9507 -1.9564 34 1 1.5001 1.8407 -1.9563 35 1 1.5288 4.2699 -1.5439 36 1 1.9899 3.7615 0.0990 37 1 4.0015 5.1531 0.0157 38 1 2.5951 6.1599 -0.4189 39 1 3.7768 8.6960 0.0842 40 1 5.4724 4.3046 -2.1693 41 1 4.8271 4.8721 -3.7300 42 1 4.2138 2.4787 -3.2046 43 1 2.8000 3.5366 -3.4321 44 1 3.0335 -3.6230 -0.1792 45 1 0.7518 -4.9992 0.7571 46 1 0.6621 -4.9072 -1.0182 47 1 3.3056 -5.8761 0.1741 48 1 1.5181 -6.6616 -2.2804 49 1 3.2059 -7.3102 -1.9161 50 1 2.3738 -8.2322 0.2957 51 1 0.6862 -7.5834 -0.0692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664781461.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:54 Heat of formation + Delta-G solvation = -14.120856 kcal Electronic energy + Delta-G solvation = -29376.489277 eV Core-core repulsion = 25312.518922 eV Total energy + Delta-G solvation = -4063.970355 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.94144 -40.09381 -39.50694 -38.47821 -37.34268 -36.07487 -35.11660 -33.42166 -31.67458 -30.87918 -29.00206 -28.14221 -27.42236 -25.50752 -24.42118 -24.06678 -23.24185 -22.50391 -22.07143 -20.84841 -20.68956 -18.85105 -18.71741 -18.18341 -17.43769 -17.25579 -16.96746 -16.57279 -16.25273 -16.07664 -15.74029 -15.49344 -15.33858 -15.12449 -15.03125 -14.97211 -14.76409 -14.53587 -14.15490 -14.08138 -13.89671 -13.46811 -13.25354 -13.08035 -13.00878 -12.61209 -12.46631 -12.45569 -12.36841 -12.35556 -12.14508 -12.02606 -11.84534 -11.55921 -11.41326 -11.38217 -11.20243 -10.57870 -10.48724 -10.28034 -9.88521 -9.29736 -8.70741 -7.88919 -5.30445 0.29220 1.19437 1.47051 1.48423 1.57559 2.05719 2.32845 2.51343 2.85900 3.04530 3.25375 3.27350 3.63784 3.66586 3.86007 3.97084 4.02114 4.07327 4.21679 4.23563 4.31479 4.33522 4.42645 4.51542 4.57711 4.59976 4.66482 4.67199 4.69471 4.74175 4.81964 4.84343 4.90553 4.94451 5.01619 5.04250 5.15181 5.18448 5.23754 5.26747 5.33882 5.34699 5.62196 5.65997 5.85723 6.13455 6.17002 6.20249 6.36053 6.61448 6.87336 7.12511 7.83439 8.38393 9.18332 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.031087 B = 0.001808 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.495945 B =15479.741963 C =15865.486329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.580 5.580 3 C 0.120 3.880 4 C 0.054 3.946 5 N -0.541 5.541 6 C 0.049 3.951 7 C 0.184 3.816 8 N -0.613 5.613 9 C -0.267 4.267 10 H 0.067 0.933 11 C -0.048 4.048 12 N -0.932 5.932 13 Si 0.966 3.034 14 H -0.284 1.284 15 H -0.295 1.295 16 H -0.269 1.269 17 C 0.144 3.856 18 C 0.058 3.942 19 C 0.499 3.501 20 O -0.544 6.544 21 C 0.511 3.489 22 O -0.529 6.529 23 N -0.688 5.688 24 C 0.150 3.850 25 C -0.179 4.179 26 C -0.179 4.179 27 C -0.163 4.163 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.024 0.976 36 H 0.088 0.912 37 H 0.000 1.000 38 H 0.055 0.945 39 H 0.251 0.749 40 H 0.014 0.986 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.027 0.973 44 H 0.418 0.582 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.118 0.882 48 H 0.097 0.903 49 H 0.103 0.897 50 H 0.107 0.893 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.088 -30.136 0.624 31.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.313 5.313 3 C -0.002 4.002 4 C -0.075 4.075 5 N -0.266 5.266 6 C -0.080 4.080 7 C 0.058 3.942 8 N -0.337 5.337 9 C -0.397 4.397 10 H 0.085 0.915 11 C -0.244 4.244 12 N -0.578 5.578 13 Si 0.794 3.206 14 H -0.211 1.211 15 H -0.222 1.222 16 H -0.194 1.194 17 C 0.019 3.981 18 C -0.071 4.071 19 C 0.281 3.719 20 O -0.421 6.421 21 C 0.291 3.709 22 O -0.407 6.407 23 N -0.341 5.341 24 C 0.028 3.972 25 C -0.198 4.198 26 C -0.215 4.215 27 C -0.200 4.200 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.042 0.958 36 H 0.106 0.894 37 H 0.018 0.982 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.032 0.968 41 H 0.080 0.920 42 H 0.106 0.894 43 H 0.045 0.955 44 H 0.256 0.744 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.136 0.864 48 H 0.116 0.884 49 H 0.121 0.879 50 H 0.126 0.874 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.914 -30.077 1.074 31.119 hybrid contribution -0.280 1.378 -0.582 1.522 sum -8.195 -28.698 0.492 29.850 Atomic orbital electron populations 1.22453 0.76210 1.04785 1.03891 1.47801 1.09113 1.04887 1.69464 1.21546 0.98102 0.83676 0.96914 1.22289 0.96848 0.91399 0.96982 1.61795 1.39645 1.02431 1.22732 1.22657 0.94262 0.91890 0.99142 1.20614 0.93786 0.93490 0.86272 1.44419 1.60544 1.07545 1.21200 1.19514 1.44602 0.84191 0.91405 0.91536 1.25737 1.01655 1.00462 0.96551 1.70235 1.49996 1.30825 1.06709 0.85289 0.78227 0.79066 0.78005 1.21124 1.22178 1.19416 1.21108 0.93071 0.87909 0.96060 1.22438 0.98096 0.98189 0.88401 1.20375 0.87348 0.85800 0.78343 1.90779 1.14216 1.87506 1.49636 1.19920 0.87343 0.85395 0.78199 1.90686 1.13744 1.87038 1.49201 1.45810 1.12086 1.04935 1.71248 1.21102 0.93608 0.79741 1.02766 1.22414 1.00924 0.91668 1.04773 1.23182 1.03844 1.03266 0.91252 1.23058 1.02156 0.94501 1.00332 0.91342 0.89963 0.88263 0.88429 0.90105 0.91146 0.94251 0.95788 0.89413 0.98231 0.92697 0.94018 0.96769 0.92044 0.89356 0.95470 0.74421 0.90489 0.90787 0.86396 0.88433 0.87894 0.87414 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.21 9.48 127.77 1.21 2.43 16 2 N -0.58 -13.05 2.87 -848.35 -2.44 -15.49 16 3 C 0.12 3.00 5.32 86.38 0.46 3.46 16 4 C 0.05 1.47 5.29 86.30 0.46 1.93 16 5 N -0.54 -18.66 4.63 -895.25 -4.14 -22.80 16 6 C 0.05 1.85 5.46 86.38 0.47 2.32 16 7 C 0.18 9.05 5.45 86.35 0.47 9.52 16 8 N -0.61 -31.67 3.04 -698.14 -2.12 -33.79 16 9 C -0.27 -14.95 9.61 84.03 0.81 -14.14 16 10 H 0.07 3.63 7.91 -2.91 -0.02 3.61 16 11 C -0.05 -2.72 4.82 84.86 0.41 -2.31 16 12 N -0.93 -55.71 11.40 21.65 0.25 -55.46 16 13 Si 0.97 45.06 29.60 68.60 2.03 47.09 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 15 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 C 0.14 6.23 6.69 86.35 0.58 6.81 16 18 C 0.06 2.04 5.62 86.38 0.49 2.52 16 19 C 0.50 12.02 7.74 87.27 0.68 12.70 16 20 O -0.54 -15.71 16.05 -3.27 -0.05 -15.77 16 21 C 0.51 10.49 7.77 87.27 0.68 11.17 16 22 O -0.53 -11.95 13.17 -3.24 -0.04 -11.99 16 23 N -0.69 -10.57 5.55 -464.42 -2.58 -13.14 16 24 C 0.15 1.75 5.95 86.38 0.51 2.26 16 25 C -0.18 -1.49 5.85 -10.79 -0.06 -1.55 16 26 C -0.18 -1.32 10.18 30.59 0.31 -1.01 16 27 C -0.16 -1.04 10.25 30.59 0.31 -0.73 16 28 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.08 1.26 8.03 -2.39 -0.02 1.24 16 30 H 0.10 1.88 5.47 -2.39 -0.01 1.87 16 31 H 0.10 2.22 6.33 -2.38 -0.02 2.20 16 32 H 0.08 2.34 7.40 -2.39 -0.02 2.33 16 33 H 0.07 1.98 7.97 -2.39 -0.02 1.96 16 34 H 0.04 1.02 8.12 -2.39 -0.02 1.00 16 35 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.09 2.81 6.16 -2.39 -0.01 2.79 16 37 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.05 2.99 6.22 -2.39 -0.01 2.98 16 39 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 40 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.06 2.53 7.96 -2.38 -0.02 2.51 16 42 H 0.09 2.65 7.99 -2.39 -0.02 2.63 16 43 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.42 5.80 7.88 -92.70 -0.73 5.07 16 45 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 0.90 7.88 -2.39 -0.02 0.88 16 47 H 0.12 0.89 8.04 -2.39 -0.02 0.87 16 48 H 0.10 0.73 8.03 -2.39 -0.02 0.71 16 49 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 50 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 51 H 0.10 0.57 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -69.07 406.08 -1.12 -70.19 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.19 Total: 15.78 kcal Atomic # 6 Polarization: 27.61 SS G_CDS: 7.78 Total: 35.39 kcal Atomic # 7 Polarization: -129.66 SS G_CDS: -11.03 Total: -140.69 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.10 Total: -27.75 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -69.07 -1.12 -70.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664781461.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.070 kcal (2) G-P(sol) polarization free energy of solvation -69.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds