Wall clock time and date at job start Tue Mar 31 2020 21:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.46789 * 65.00069 * 11 10 9 13 13 N 1.46503 * 109.47212 * 305.00581 * 11 10 9 14 14 C 1.34773 * 119.99980 * 154.99163 * 13 11 10 15 15 O 1.21279 * 120.00434 * 0.02562 * 14 13 11 16 16 C 1.50703 * 119.99703 * 179.97438 * 14 13 11 17 17 C 1.53003 * 109.46899 * 180.02562 * 16 14 13 18 18 H 1.09004 * 109.48286 * 305.02282 * 17 16 14 19 19 C 1.53093 * 109.48226 * 184.99999 * 17 16 14 20 20 C 1.53177 * 109.16678 * 182.40731 * 19 17 16 21 21 C 1.53173 * 109.03414 * 56.97977 * 20 19 17 22 22 C 1.53094 * 109.16906 * 303.02113 * 21 20 19 23 23 O 1.42903 * 109.41094 * 57.60676 * 22 21 20 24 24 C 1.52999 * 109.47457 * 185.00151 * 11 10 9 25 25 C 1.53001 * 109.46934 * 300.00038 * 24 11 10 26 26 C 1.52999 * 109.46934 * 180.02562 * 25 24 11 27 27 C 1.52998 * 109.47103 * 59.99931 * 26 25 24 28 28 C 1.52998 * 109.47698 * 300.00185 * 27 26 25 29 29 C 1.52999 * 109.46995 * 59.99748 * 28 27 26 30 30 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 33 33 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 34 34 H 0.96999 * 119.99599 * 334.99953 * 13 11 10 35 35 H 1.08997 * 109.47333 * 300.00038 * 16 14 13 36 36 H 1.08993 * 109.47320 * 60.00826 * 16 14 13 37 37 H 1.09002 * 109.52450 * 302.31783 * 19 17 16 38 38 H 1.09004 * 109.51781 * 62.43776 * 19 17 16 39 39 H 1.08994 * 109.54181 * 176.84978 * 20 19 17 40 40 H 1.09007 * 109.54118 * 297.11699 * 20 19 17 41 41 H 1.09008 * 109.52135 * 62.92659 * 21 20 19 42 42 H 1.08999 * 109.52409 * 183.04752 * 21 20 19 43 43 H 1.08994 * 109.48322 * 177.58589 * 22 21 20 44 44 H 1.09004 * 109.47821 * 297.62006 * 22 21 20 45 45 H 1.08991 * 109.46890 * 60.00423 * 24 11 10 46 46 H 1.08996 * 109.47289 * 299.99593 * 25 24 11 47 47 H 1.08995 * 109.46739 * 60.00353 * 25 24 11 48 48 H 1.09003 * 109.47278 * 300.00617 * 26 25 24 49 49 H 1.08997 * 109.47299 * 180.02562 * 26 25 24 50 50 H 1.09004 * 109.47176 * 180.02562 * 27 26 25 51 51 H 1.09004 * 109.47171 * 60.00519 * 27 26 25 52 52 H 1.09007 * 109.46807 * 299.99938 * 28 27 26 53 53 H 1.08995 * 109.47587 * 180.02562 * 28 27 26 54 54 H 1.09004 * 109.47114 * 180.02562 * 29 28 27 55 55 H 1.08994 * 109.47394 * 60.00189 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.4975 -4.8138 -0.9301 13 7 0.1449 -4.6758 1.1329 14 6 -1.0796 -5.2366 1.0820 15 8 -1.4204 -5.8608 0.0996 16 6 -2.0249 -5.0891 2.2464 17 6 -3.3354 -5.8143 1.9344 18 1 -3.7422 -5.4418 0.9941 19 6 -4.3402 -5.5608 3.0613 20 6 -5.6277 -6.3383 2.7715 21 6 -5.2899 -7.8243 2.6174 22 6 -4.2486 -7.9906 1.5076 23 8 -3.0891 -7.2177 1.8245 24 6 1.8250 -6.1411 0.1269 25 6 2.7848 -6.2913 -1.0550 26 6 3.5453 -7.6130 -0.9296 27 6 2.5507 -8.7756 -0.9293 28 6 1.5907 -8.6254 0.2525 29 6 0.8303 -7.3037 0.1271 30 1 -0.4850 0.8401 0.0004 31 1 0.3557 -2.3880 0.0005 32 1 2.6849 -3.7145 -0.8894 33 1 2.6848 -3.7144 0.8905 34 1 0.4176 -4.1768 1.9187 35 1 -1.5732 -5.5233 3.1383 36 1 -2.2265 -4.0320 2.4190 37 1 -3.9175 -5.8960 4.0084 38 1 -4.5621 -4.4951 3.1184 39 1 -6.3266 -6.2069 3.5975 40 1 -6.0770 -5.9689 1.8496 41 1 -4.8864 -8.2054 3.5556 42 1 -6.1922 -8.3779 2.3574 43 1 -3.9726 -9.0416 1.4225 44 1 -4.6673 -7.6469 0.5617 45 1 2.3914 -6.1469 1.0581 46 1 2.2183 -6.2855 -1.9862 47 1 3.4931 -5.4628 -1.0554 48 1 4.1117 -7.6194 0.0017 49 1 4.2294 -7.7199 -1.7714 50 1 3.0924 -9.7172 -0.8395 51 1 1.9842 -8.7694 -1.8606 52 1 2.1572 -8.6317 1.1838 53 1 0.8825 -9.4539 0.2530 54 1 0.1467 -7.1965 0.9694 55 1 0.2638 -7.2974 -0.8041 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667131314.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:22 Heat of formation + Delta-G solvation = -129.526152 kcal Electronic energy + Delta-G solvation = -31486.858187 eV Core-core repulsion = 27521.423826 eV Total energy + Delta-G solvation = -3965.434361 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.35496 -40.21518 -38.98828 -37.15007 -35.26268 -34.47953 -33.87841 -32.98622 -32.07491 -31.50294 -29.39092 -28.31974 -25.73090 -25.20168 -24.00842 -23.46391 -22.95142 -21.66032 -21.20594 -21.14136 -20.55747 -19.20019 -17.80798 -17.50589 -17.27055 -16.87340 -16.68825 -16.36508 -15.57810 -15.54753 -15.32753 -15.25775 -15.14984 -14.99482 -14.83584 -14.74194 -14.49761 -13.89853 -13.80151 -13.52702 -13.33641 -13.22207 -13.14881 -12.99744 -12.83581 -12.72700 -12.52248 -12.40669 -12.15135 -12.10565 -11.97088 -11.93956 -11.81927 -11.76747 -11.63158 -11.38501 -11.22381 -11.10959 -10.95604 -10.79708 -10.59759 -10.26348 -9.76560 -8.98911 -7.92906 -5.22211 1.48897 1.51370 1.57355 1.85609 2.34919 2.57228 2.88364 3.41009 3.62135 3.73186 3.79387 3.87167 3.91823 3.95929 4.01775 4.10613 4.18659 4.19477 4.24679 4.31436 4.38185 4.49547 4.50788 4.53192 4.61213 4.64896 4.67445 4.70578 4.74441 4.75916 4.79085 4.81288 4.91780 4.94490 4.99237 5.04968 5.09319 5.14530 5.17854 5.20242 5.22918 5.31759 5.33229 5.37148 5.40493 5.45018 5.50541 5.53461 5.64513 5.74889 6.27757 6.38403 6.73504 7.35195 7.45542 8.08807 8.33477 9.29895 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007661 B = 0.003907 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3654.100586 B = 7164.854427 C =10530.604178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.972 3.028 4 H -0.297 1.297 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.077 0.923 9 N -0.741 5.741 10 C 0.148 3.852 11 C 0.155 3.845 12 H 0.051 0.949 13 N -0.712 5.712 14 C 0.511 3.489 15 O -0.565 6.565 16 C -0.132 4.132 17 C 0.109 3.891 18 H 0.039 0.961 19 C -0.147 4.147 20 C -0.123 4.123 21 C -0.149 4.149 22 C 0.056 3.944 23 O -0.388 6.388 24 C -0.081 4.081 25 C -0.115 4.115 26 C -0.111 4.111 27 C -0.116 4.116 28 C -0.115 4.115 29 C -0.091 4.091 30 H 0.250 0.750 31 H 0.374 0.626 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.407 0.593 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.038 0.962 45 H 0.078 0.922 46 H 0.049 0.951 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.051 0.949 52 H 0.065 0.935 53 H 0.057 0.943 54 H 0.047 0.953 55 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.111 -19.089 7.336 20.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.264 4.264 3 Si 0.801 3.199 4 H -0.224 1.224 5 H -0.201 1.201 6 H -0.208 1.208 7 C -0.377 4.377 8 H 0.095 0.905 9 N -0.384 5.384 10 C 0.022 3.978 11 C 0.050 3.950 12 H 0.069 0.931 13 N -0.363 5.363 14 C 0.299 3.701 15 O -0.444 6.444 16 C -0.172 4.172 17 C 0.051 3.949 18 H 0.057 0.943 19 C -0.184 4.184 20 C -0.161 4.161 21 C -0.187 4.187 22 C -0.021 4.021 23 O -0.307 6.307 24 C -0.101 4.101 25 C -0.153 4.153 26 C -0.149 4.149 27 C -0.154 4.154 28 C -0.152 4.152 29 C -0.128 4.128 30 H 0.059 0.941 31 H 0.206 0.794 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.242 0.758 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.116 0.884 44 H 0.056 0.944 45 H 0.096 0.904 46 H 0.068 0.932 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.093 0.907 51 H 0.070 0.930 52 H 0.084 0.916 53 H 0.075 0.925 54 H 0.066 0.934 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.012 -19.505 6.656 20.996 hybrid contribution -0.327 1.639 -0.122 1.676 sum -4.339 -17.866 6.534 19.512 Atomic orbital electron populations 1.69821 1.06575 1.26011 1.59357 1.25516 0.96295 1.00921 1.03623 0.85240 0.77183 0.79320 0.78154 1.22388 1.20119 1.20779 1.19588 0.91528 0.85191 1.41393 0.90499 1.42505 1.05622 1.00865 1.89445 1.21108 0.93507 0.84165 0.99060 1.21027 0.90065 0.94628 0.89284 0.93081 1.45942 1.14952 1.55028 1.20406 1.20892 0.82291 0.77779 0.89146 1.90668 1.76596 1.42002 1.35105 1.21792 0.94340 1.03391 0.97670 1.21720 0.93951 0.81836 0.97399 0.94294 1.22201 0.95738 1.01800 0.98685 1.21609 0.97049 0.94919 1.02489 1.22161 0.99620 0.97203 0.99696 1.22644 0.86605 0.96136 0.96674 1.87929 1.33668 1.17742 1.91390 1.21428 0.96136 0.92806 0.99685 1.21603 0.97867 0.98666 0.97137 1.21488 0.97486 0.93385 1.02518 1.21528 0.97207 0.98698 0.97947 1.21528 0.98136 0.96579 0.98970 1.21413 0.96480 0.94107 1.00842 0.94118 0.79377 0.94626 0.94634 0.75829 0.86450 0.86352 0.90120 0.89930 0.89729 0.92318 0.90821 0.89415 0.88445 0.94409 0.90369 0.93244 0.91449 0.91242 0.91020 0.90667 0.93021 0.91598 0.92454 0.93430 0.94271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.44 13.06 21.65 0.28 -58.16 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 3 Si 0.97 45.47 29.55 68.60 2.03 47.50 16 4 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.25 -13.40 9.99 84.03 0.84 -12.56 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -36.85 5.43 -343.47 -1.87 -38.72 16 10 C 0.15 5.76 5.31 86.38 0.46 6.22 16 11 C 0.16 5.39 1.99 44.99 0.09 5.48 16 12 H 0.05 2.12 7.58 -2.38 -0.02 2.10 16 13 N -0.71 -23.22 4.41 -442.52 -1.95 -25.17 16 14 C 0.51 17.04 6.07 87.66 0.53 17.57 16 15 O -0.56 -22.48 12.54 10.70 0.13 -22.35 16 16 C -0.13 -3.39 5.41 29.85 0.16 -3.22 16 17 C 0.11 2.81 2.19 30.63 0.07 2.88 16 18 H 0.04 1.19 7.96 -2.39 -0.02 1.17 16 19 C -0.15 -2.76 5.42 30.68 0.17 -2.60 16 20 C -0.12 -2.03 6.03 30.71 0.19 -1.84 16 21 C -0.15 -2.41 6.14 30.68 0.19 -2.22 16 22 C 0.06 1.22 6.84 72.01 0.49 1.71 16 23 O -0.39 -10.85 9.64 -135.25 -1.30 -12.16 16 24 C -0.08 -2.28 1.96 -10.79 -0.02 -2.31 16 25 C -0.11 -2.97 4.85 30.59 0.15 -2.82 16 26 C -0.11 -2.29 5.92 30.59 0.18 -2.11 16 27 C -0.12 -2.40 5.92 30.59 0.18 -2.21 16 28 C -0.11 -2.67 5.92 30.59 0.18 -2.49 16 29 C -0.09 -2.67 3.73 30.60 0.11 -2.55 16 30 H 0.25 14.75 8.31 -92.71 -0.77 13.97 16 31 H 0.37 20.17 7.33 -92.71 -0.68 19.49 16 32 H 0.04 1.40 6.71 -2.39 -0.02 1.38 16 33 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.41 12.37 8.60 -92.71 -0.80 11.58 16 35 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.07 1.75 6.54 -2.39 -0.02 1.74 16 48 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 51 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 52 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 53 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 54 H 0.05 1.55 5.77 -2.38 -0.01 1.53 16 55 H 0.04 1.36 7.53 -2.39 -0.02 1.35 16 Total: -1.00 -68.20 414.02 1.14 -67.06 By element: Atomic # 1 Polarization: 49.22 SS G_CDS: -0.62 Total: 48.60 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 4.43 Total: -6.61 kcal Atomic # 7 Polarization: -118.51 SS G_CDS: -3.53 Total: -122.04 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -1.17 Total: -34.50 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -68.20 1.14 -67.06 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667131314.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.466 kcal (2) G-P(sol) polarization free energy of solvation -68.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds