Wall clock time and date at job start Tue Mar 31 2020 21:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99863 * 2 1 4 4 H 1.48503 * 109.47328 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47338 * 300.00451 * 3 2 1 6 6 H 1.48502 * 109.47016 * 60.00540 * 3 2 1 7 7 C 1.38815 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00239 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99841 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00196 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47170 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47153 * 294.99818 * 11 10 9 13 13 N 1.46505 * 109.47212 * 54.99826 * 11 10 9 14 14 C 1.34769 * 119.99686 * 204.99833 * 13 11 10 15 15 O 1.21275 * 120.00678 * 0.02562 * 14 13 11 16 16 C 1.50701 * 119.99690 * 179.97438 * 14 13 11 17 17 C 1.52999 * 109.47228 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.48461 * 305.02417 * 17 16 14 19 19 C 1.53098 * 109.48157 * 184.99979 * 17 16 14 20 20 C 1.53171 * 109.16245 * 182.41160 * 19 17 16 21 21 C 1.53178 * 109.03699 * 56.98166 * 20 19 17 22 22 C 1.53088 * 109.16376 * 303.01680 * 21 20 19 23 23 O 1.42903 * 109.47786 * 65.06133 * 17 16 14 24 24 C 1.53002 * 109.46817 * 175.00049 * 11 10 9 25 25 C 1.52996 * 109.46972 * 299.99733 * 24 11 10 26 26 C 1.53002 * 109.46969 * 180.02562 * 25 24 11 27 27 C 1.53002 * 109.47454 * 59.99949 * 26 25 24 28 28 C 1.52996 * 109.46891 * 300.00332 * 27 26 25 29 29 C 1.53002 * 109.47346 * 59.99997 * 28 27 26 30 30 H 0.97000 * 120.00161 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99616 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46998 * 59.99959 * 10 9 7 33 33 H 1.09000 * 109.46967 * 300.00182 * 10 9 7 34 34 H 0.97000 * 119.99634 * 25.00165 * 13 11 10 35 35 H 1.08996 * 109.47353 * 300.00507 * 16 14 13 36 36 H 1.09006 * 109.47337 * 60.00072 * 16 14 13 37 37 H 1.09001 * 109.52051 * 302.31489 * 19 17 16 38 38 H 1.08997 * 109.52020 * 62.44468 * 19 17 16 39 39 H 1.09002 * 109.54622 * 176.84909 * 20 19 17 40 40 H 1.09006 * 109.54748 * 297.11686 * 20 19 17 41 41 H 1.08994 * 109.52558 * 62.92806 * 21 20 19 42 42 H 1.09006 * 109.52108 * 183.05118 * 21 20 19 43 43 H 1.08999 * 109.48172 * 177.59493 * 22 21 20 44 44 H 1.09002 * 109.48451 * 297.61770 * 22 21 20 45 45 H 1.08996 * 109.47407 * 60.00219 * 24 11 10 46 46 H 1.09004 * 109.47298 * 300.00176 * 25 24 11 47 47 H 1.09004 * 109.47552 * 60.00305 * 25 24 11 48 48 H 1.09004 * 109.46930 * 300.00004 * 26 25 24 49 49 H 1.09002 * 109.47067 * 180.02562 * 26 25 24 50 50 H 1.08992 * 109.47056 * 179.97438 * 27 26 25 51 51 H 1.09004 * 109.47006 * 60.00102 * 27 26 25 52 52 H 1.08996 * 109.47261 * 299.99425 * 28 27 26 53 53 H 1.09004 * 109.47368 * 179.97438 * 28 27 26 54 54 H 1.09002 * 109.47075 * 180.02562 * 29 28 27 55 55 H 1.08996 * 109.47407 * 59.99517 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0639 -4.8197 -0.0031 12 1 0.4981 -4.8143 0.9285 13 7 0.1439 -4.6753 -1.1341 14 6 -1.0804 -5.2362 -1.0826 15 8 -1.4208 -5.8601 -0.0999 16 6 -2.0270 -5.0872 -2.2457 17 6 -3.3372 -5.8129 -1.9333 18 1 -3.1254 -6.8505 -1.6751 19 6 -4.2508 -5.7684 -3.1609 20 6 -5.5829 -6.4437 -2.8210 21 6 -6.2036 -5.7425 -1.6088 22 6 -5.2146 -5.7880 -0.4411 23 8 -3.9869 -5.1711 -0.8341 24 6 1.8248 -6.1410 -0.1300 25 6 2.6190 -6.1486 -1.4377 26 6 3.3794 -7.4702 -1.5649 27 6 2.3849 -8.6329 -1.5655 28 6 1.5906 -8.6252 -0.2578 29 6 0.8302 -7.3037 -0.1307 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3880 -0.0016 32 1 2.6848 -3.7153 0.8872 33 1 2.6848 -3.7137 -0.8928 34 1 0.4161 -4.1760 -1.9199 35 1 -2.2287 -4.0298 -2.4169 36 1 -1.5763 -5.5202 -3.1388 37 1 -4.4301 -4.7312 -3.4442 38 1 -3.7751 -6.2950 -3.9882 39 1 -6.2588 -6.3662 -3.6726 40 1 -5.4098 -7.4939 -2.5856 41 1 -6.4223 -4.7049 -1.8607 42 1 -7.1255 -6.2509 -1.3265 43 1 -5.6336 -5.2532 0.4112 44 1 -5.0277 -6.8253 -0.1632 45 1 2.5092 -6.2485 0.7114 46 1 1.9345 -6.0412 -2.2792 47 1 3.3274 -5.3201 -1.4375 48 1 4.0639 -7.5780 -0.7234 49 1 3.9456 -7.4754 -2.4963 50 1 2.9265 -9.5743 -1.6566 51 1 1.7004 -8.5251 -2.4070 52 1 2.2750 -8.7331 0.5836 53 1 0.8817 -9.4533 -0.2584 54 1 0.2647 -7.2981 0.8012 55 1 0.1458 -7.1958 -0.9721 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667131316.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:27 Heat of formation + Delta-G solvation = -127.460891 kcal Electronic energy + Delta-G solvation = -31652.302289 eV Core-core repulsion = 27686.957485 eV Total energy + Delta-G solvation = -3965.344805 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.41832 -40.23927 -38.90019 -37.11883 -35.24274 -34.48753 -33.86979 -32.91910 -31.98362 -31.55619 -29.35246 -28.38238 -25.73492 -25.23472 -23.99952 -23.67935 -22.94630 -21.66692 -21.13929 -21.09929 -20.31882 -19.20290 -17.83929 -17.47933 -17.29203 -16.77330 -16.56306 -16.35332 -15.86452 -15.50233 -15.36631 -15.27452 -15.11662 -14.90724 -14.81521 -14.72478 -14.44892 -13.94605 -13.80376 -13.50342 -13.44249 -13.23288 -13.16783 -12.99921 -12.84549 -12.76945 -12.51824 -12.19496 -12.15463 -12.01288 -11.95581 -11.93439 -11.88689 -11.74169 -11.62970 -11.29475 -11.22951 -11.13559 -10.97438 -10.73327 -10.57326 -10.26243 -9.74113 -8.98561 -7.92850 -5.22501 1.47980 1.48951 1.58824 1.87162 2.38452 2.56876 2.92136 3.41182 3.63929 3.77775 3.78904 3.84223 3.91254 3.96540 4.01116 4.14299 4.18546 4.21264 4.26057 4.31210 4.40526 4.49850 4.51710 4.53729 4.59199 4.62882 4.69704 4.72022 4.73356 4.78301 4.80712 4.85454 4.90958 4.93624 4.99535 5.08463 5.10791 5.14650 5.18805 5.20883 5.26579 5.30274 5.35613 5.37083 5.41891 5.45631 5.52128 5.57180 5.64380 5.76156 6.27549 6.43124 6.75728 7.34727 7.47986 8.09185 8.32982 9.30322 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007071 B = 0.004212 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3959.054588 B = 6645.401021 C = 9911.814529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.298 1.298 7 C -0.242 4.242 8 H 0.078 0.922 9 N -0.742 5.742 10 C 0.146 3.854 11 C 0.155 3.845 12 H 0.048 0.952 13 N -0.707 5.707 14 C 0.511 3.489 15 O -0.565 6.565 16 C -0.134 4.134 17 C 0.108 3.892 18 H 0.054 0.946 19 C -0.147 4.147 20 C -0.120 4.120 21 C -0.152 4.152 22 C 0.056 3.944 23 O -0.400 6.400 24 C -0.084 4.084 25 C -0.110 4.110 26 C -0.114 4.114 27 C -0.113 4.113 28 C -0.117 4.117 29 C -0.093 4.093 30 H 0.249 0.751 31 H 0.373 0.627 32 H 0.027 0.973 33 H 0.047 0.953 34 H 0.406 0.594 35 H 0.096 0.904 36 H 0.138 0.862 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.062 0.938 49 H 0.072 0.928 50 H 0.072 0.928 51 H 0.058 0.942 52 H 0.061 0.939 53 H 0.059 0.941 54 H 0.038 0.962 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.938 -19.904 -9.639 22.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.226 1.226 7 C -0.374 4.374 8 H 0.096 0.904 9 N -0.385 5.385 10 C 0.019 3.981 11 C 0.050 3.950 12 H 0.066 0.934 13 N -0.358 5.358 14 C 0.299 3.701 15 O -0.444 6.444 16 C -0.174 4.174 17 C 0.050 3.950 18 H 0.072 0.928 19 C -0.185 4.185 20 C -0.157 4.157 21 C -0.190 4.190 22 C -0.021 4.021 23 O -0.320 6.320 24 C -0.104 4.104 25 C -0.147 4.147 26 C -0.152 4.152 27 C -0.150 4.150 28 C -0.155 4.155 29 C -0.131 4.131 30 H 0.058 0.942 31 H 0.205 0.795 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.241 0.759 35 H 0.114 0.886 36 H 0.156 0.844 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.076 0.924 52 H 0.080 0.920 53 H 0.078 0.922 54 H 0.056 0.944 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.919 -20.091 -8.841 22.298 hybrid contribution -0.206 1.461 0.201 1.489 sum -4.125 -18.630 -8.640 20.947 Atomic orbital electron populations 1.69849 1.06690 1.25844 1.59525 1.25540 0.96252 1.01018 1.03737 0.85098 0.78340 0.79951 0.76492 1.18851 1.21955 1.22578 1.19666 0.91530 0.85155 1.41033 0.90372 1.42548 1.05630 1.00958 1.89382 1.21154 0.93585 0.84177 0.99175 1.20990 0.90045 0.94728 0.89267 0.93384 1.45877 1.14754 1.54908 1.20259 1.20867 0.81967 0.78037 0.89211 1.90662 1.76242 1.42700 1.34842 1.21827 0.93636 1.04167 0.97732 1.21823 0.90840 0.95478 0.86886 0.92817 1.22219 0.96417 1.02377 0.97456 1.21594 0.96351 0.99452 0.98319 1.22179 0.99082 1.01818 0.95928 1.22632 0.84345 0.97672 0.97427 1.88007 1.37102 1.55522 1.51354 1.21428 0.96788 0.92761 0.99411 1.21578 0.98640 0.98157 0.96353 1.21513 0.97629 0.93835 1.02198 1.21496 0.97901 0.98641 0.97010 1.21555 0.98856 0.96554 0.98493 1.21450 0.96679 0.94104 1.00873 0.94181 0.79454 0.95498 0.93533 0.75909 0.88569 0.84433 0.91340 0.88612 0.89716 0.91357 0.91769 0.89216 0.89535 0.93466 0.90653 0.91960 0.91782 0.91933 0.90982 0.90976 0.92363 0.92044 0.92220 0.94359 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.98 13.06 21.65 0.28 -59.69 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 3 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 7 C -0.24 -13.38 9.99 84.03 0.84 -12.54 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 9 N -0.74 -37.45 5.43 -343.45 -1.87 -39.32 16 10 C 0.15 5.68 5.60 86.38 0.48 6.16 16 11 C 0.16 5.34 2.16 44.99 0.10 5.44 16 12 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 13 N -0.71 -22.63 3.64 -442.54 -1.61 -24.24 16 14 C 0.51 16.85 6.06 87.66 0.53 17.38 16 15 O -0.57 -22.31 12.54 10.74 0.13 -22.18 16 16 C -0.13 -3.40 5.41 29.85 0.16 -3.24 16 17 C 0.11 2.74 2.19 30.63 0.07 2.81 16 18 H 0.05 1.43 7.96 -2.39 -0.02 1.41 16 19 C -0.15 -2.68 5.42 30.68 0.17 -2.51 16 20 C -0.12 -1.91 6.03 30.71 0.19 -1.72 16 21 C -0.15 -2.81 6.14 30.68 0.19 -2.62 16 22 C 0.06 1.39 6.84 72.01 0.49 1.88 16 23 O -0.40 -12.96 9.64 -135.22 -1.30 -14.27 16 24 C -0.08 -2.29 2.07 -10.79 -0.02 -2.31 16 25 C -0.11 -2.50 4.70 30.59 0.14 -2.35 16 26 C -0.11 -2.11 5.92 30.60 0.18 -1.93 16 27 C -0.11 -2.03 5.92 30.59 0.18 -1.84 16 28 C -0.12 -2.50 5.92 30.59 0.18 -2.32 16 29 C -0.09 -2.56 3.73 30.60 0.11 -2.45 16 30 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.37 20.67 7.33 -92.71 -0.68 19.99 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 1.68 6.18 -2.39 -0.01 1.67 16 34 H 0.41 12.21 8.60 -92.71 -0.80 11.41 16 35 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.14 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 44 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.06 1.40 7.60 -2.38 -0.02 1.39 16 47 H 0.06 1.52 6.32 -2.39 -0.02 1.51 16 48 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 49 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 50 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 52 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 53 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 54 H 0.04 1.26 7.53 -2.39 -0.02 1.24 16 55 H 0.05 1.52 5.77 -2.39 -0.01 1.51 16 Total: -1.00 -71.04 412.37 1.51 -69.54 By element: Atomic # 1 Polarization: 48.48 SS G_CDS: -0.62 Total: 47.87 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 4.46 Total: -5.90 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -3.19 Total: -123.25 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -1.17 Total: -36.44 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -71.04 1.51 -69.54 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667131316.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.923 kcal (2) G-P(sol) polarization free energy of solvation -71.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds