Wall clock time and date at job start Tue Mar 31 2020 21:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46941 * 2 1 4 4 C 1.46500 * 120.00236 * 275.91091 * 3 2 1 5 5 C 1.53000 * 109.47252 * 270.00453 * 4 3 2 6 6 N 1.46507 * 109.46964 * 179.97438 * 5 4 3 7 7 C 1.36932 * 119.99953 * 179.97438 * 6 5 4 8 8 H 1.08007 * 120.00110 * 359.97438 * 7 6 5 9 9 C 1.38808 * 120.00053 * 180.02562 * 7 6 5 10 10 N 1.31619 * 119.99939 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00086 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47022 * 59.99915 * 11 9 7 13 13 H 1.48498 * 109.46950 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47057 * 300.00123 * 11 9 7 15 15 C 1.34776 * 119.99668 * 95.91851 * 3 2 1 16 16 O 1.21283 * 120.00073 * 186.40878 * 15 3 2 17 17 C 1.50699 * 120.00179 * 6.40586 * 15 3 2 18 18 H 1.08999 * 109.47146 * 49.27373 * 17 15 3 19 19 C 1.52998 * 109.46924 * 289.27414 * 17 15 3 20 20 N 1.46501 * 109.47317 * 169.27502 * 17 15 3 21 21 N 1.29016 * 126.43741 * 59.68358 * 20 17 15 22 22 N 1.28741 * 108.81038 * 179.83513 * 21 20 17 23 23 N 1.28839 * 109.39574 * 0.44507 * 22 21 20 24 24 C 1.31079 * 107.99007 * 359.72921 * 23 22 21 25 25 C 1.50694 * 126.66055 * 179.97438 * 24 23 22 26 26 C 1.53000 * 109.47234 * 240.04598 * 25 24 23 27 27 C 1.52999 * 109.47227 * 0.04565 * 25 24 23 28 28 C 1.53001 * 109.47022 * 120.04439 * 25 24 23 29 29 H 1.09007 * 109.47313 * 67.99802 * 1 2 3 30 30 H 1.08997 * 109.47354 * 187.99822 * 1 2 3 31 31 H 1.08997 * 109.46917 * 308.00000 * 1 2 3 32 32 H 1.09000 * 109.47006 * 240.00104 * 2 1 3 33 33 H 1.08994 * 109.47132 * 119.99947 * 2 1 3 34 34 H 1.09003 * 109.46713 * 30.00727 * 4 3 2 35 35 H 1.08998 * 109.47014 * 149.99854 * 4 3 2 36 36 H 1.08994 * 109.46930 * 299.99732 * 5 4 3 37 37 H 1.08995 * 109.46925 * 60.00049 * 5 4 3 38 38 H 0.96998 * 119.99757 * 359.97438 * 6 5 4 39 39 H 0.97005 * 119.99862 * 180.02562 * 10 9 7 40 40 H 1.09000 * 109.47203 * 66.05857 * 19 17 15 41 41 H 1.09006 * 109.46600 * 186.05290 * 19 17 15 42 42 H 1.08998 * 109.47309 * 306.05332 * 19 17 15 43 43 H 1.08991 * 109.47265 * 60.00159 * 26 25 24 44 44 H 1.09002 * 109.46942 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.47025 * 300.00128 * 26 25 24 46 46 H 1.09006 * 109.47480 * 59.99698 * 27 25 24 47 47 H 1.08997 * 109.47606 * 180.02562 * 27 25 24 48 48 H 1.09005 * 109.47241 * 299.99886 * 27 25 24 49 49 H 1.09000 * 109.46986 * 60.00025 * 28 25 24 50 50 H 1.09004 * 109.46899 * 179.97438 * 28 25 24 51 51 H 1.09000 * 109.47274 * 299.99696 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1393 2.1155 -1.2620 5 6 3.5341 1.8928 -1.8499 6 7 3.6548 2.6265 -3.1122 7 6 4.8236 2.5768 -3.8240 8 1 5.6566 1.9970 -3.4546 9 6 4.9381 3.2725 -5.0197 10 7 3.9232 3.9795 -5.4696 11 14 6.5328 3.2052 -5.9903 12 1 6.8256 1.7982 -6.3643 13 1 6.3985 4.0262 -7.2204 14 1 7.6416 3.7372 -5.1581 15 6 2.3564 1.9764 1.1610 16 8 2.6491 3.1533 1.1765 17 6 2.3706 1.1797 2.4401 18 1 2.9301 0.2568 2.2871 19 6 0.9346 0.8438 2.8477 20 7 3.0073 1.9670 3.4988 21 7 2.6190 3.1162 3.9381 22 7 3.4211 3.4970 4.8702 23 7 4.3375 2.6067 5.0363 24 6 4.1107 1.6300 4.1920 25 6 4.9273 0.3740 4.0288 26 6 5.4684 0.2997 2.5996 27 6 6.0958 0.3935 5.0161 28 6 4.0466 -0.8463 4.3048 29 1 -0.3634 0.3850 -0.9529 30 1 -0.3634 -1.0176 0.1430 31 1 -0.3633 0.6327 0.8098 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.3872 1.7566 -1.9646 35 1 1.9875 3.1793 -1.0793 36 1 4.2861 2.2517 -1.1473 37 1 3.6858 0.8290 -2.0325 38 1 2.9068 3.1476 -3.4437 39 1 4.0032 4.4653 -6.3054 40 1 0.4964 0.1695 2.1119 41 1 0.9378 0.3621 3.8255 42 1 0.3468 1.7605 2.8961 43 1 6.0958 1.1689 2.4029 44 1 6.0586 -0.6091 2.4814 45 1 4.6359 0.2858 1.8961 46 1 5.7104 0.4465 6.0344 47 1 6.6868 -0.5147 4.8978 48 1 6.7233 1.2629 4.8195 49 1 3.2141 -0.8601 3.6014 50 1 4.6372 -1.7548 4.1863 51 1 3.6612 -0.7934 5.3230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668449795.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:47 Heat of formation + Delta-G solvation = 101.120109 kcal Electronic energy + Delta-G solvation = -31452.820576 eV Core-core repulsion = 27426.140195 eV Total energy + Delta-G solvation = -4026.680381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.32459 -40.53285 -37.81953 -36.67137 -36.05238 -34.72296 -32.50708 -31.73701 -31.12874 -30.61807 -28.02225 -27.91515 -27.79942 -25.70162 -24.24064 -23.95928 -23.83596 -22.78657 -21.58188 -20.40622 -19.38942 -17.83116 -17.62500 -17.16235 -16.88112 -16.14652 -16.03771 -15.34493 -15.01824 -14.70813 -14.53348 -14.47129 -14.20751 -13.80865 -13.54596 -13.30775 -13.11739 -13.05162 -12.96312 -12.90702 -12.85341 -12.77174 -12.46535 -12.23127 -12.17357 -11.99923 -11.85176 -11.58014 -11.47896 -11.40405 -11.33991 -11.15211 -11.07228 -11.01550 -10.95387 -10.74292 -10.21298 -10.16377 -9.88750 -9.75522 -8.93106 -8.81337 -7.00554 -5.81196 -3.11407 1.13917 1.62922 2.22641 2.25117 2.68906 3.41340 3.46018 3.47085 3.51174 3.71630 3.88776 4.02291 4.12256 4.34278 4.48953 4.54858 4.57005 4.71574 4.77947 4.85365 4.92227 4.98149 5.02882 5.17441 5.24095 5.27038 5.30540 5.35277 5.37539 5.41725 5.43134 5.46188 5.53330 5.56213 5.57548 5.65344 5.68818 5.79499 5.86222 5.90805 5.94914 5.98913 6.02630 6.34785 6.57498 6.72401 7.13622 7.63838 7.85904 8.36672 8.60295 9.47862 10.02384 10.37281 11.41429 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.003128 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.304939 B = 8950.514268 C = 9810.043146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.094 3.906 3 N -0.599 5.599 4 C 0.107 3.893 5 C 0.144 3.856 6 N -0.729 5.729 7 C -0.243 4.243 8 H 0.069 0.931 9 C -0.011 4.011 10 N -0.932 5.932 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.504 3.496 16 O -0.498 6.498 17 C 0.118 3.882 18 H 0.142 0.858 19 C -0.177 4.177 20 N -0.289 5.289 21 N -0.062 5.062 22 N -0.083 5.083 23 N -0.300 5.300 24 C 0.192 3.808 25 C 0.013 3.987 26 C -0.153 4.153 27 C -0.131 4.131 28 C -0.150 4.150 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.385 0.615 39 H 0.257 0.743 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.056 0.944 50 H 0.081 0.919 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.112 -17.592 19.867 27.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.030 4.030 3 N -0.333 5.333 4 C -0.014 4.014 5 C 0.015 3.985 6 N -0.374 5.374 7 C -0.374 4.374 8 H 0.087 0.913 9 C -0.207 4.207 10 N -0.580 5.580 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.216 1.216 14 H -0.212 1.212 15 C 0.287 3.713 16 O -0.370 6.370 17 C 0.012 3.988 18 H 0.159 0.841 19 C -0.235 4.235 20 N -0.091 5.091 21 N -0.047 5.047 22 N -0.076 5.076 23 N -0.148 5.148 24 C -0.087 4.087 25 C 0.010 3.990 26 C -0.211 4.211 27 C -0.189 4.189 28 C -0.208 4.208 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.218 0.782 39 H 0.067 0.933 40 H 0.126 0.874 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.100 0.900 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.079 -15.657 20.430 26.448 hybrid contribution 0.663 -0.594 -1.358 1.624 sum -5.416 -16.251 19.072 25.635 Atomic orbital electron populations 1.22445 0.95310 1.02712 1.03645 1.21792 0.94994 0.82412 1.03754 1.47826 1.64693 1.14356 1.06406 1.21800 0.99200 0.97945 0.82502 1.20882 0.93124 0.95383 0.89077 1.42176 1.15851 1.58358 1.21012 1.19129 0.91693 1.25161 1.01395 0.91271 1.24751 0.97822 0.99896 0.98247 1.69649 1.30332 1.35413 1.22624 0.86243 0.82998 0.77363 0.79429 1.21194 1.21558 1.21182 1.20048 0.78915 0.87991 0.84361 1.90875 1.46128 1.14782 1.85214 1.21951 0.98113 0.93939 0.84840 0.84117 1.22585 0.91824 1.04940 1.04143 1.48062 1.19917 1.14398 1.26741 1.78971 1.21660 0.95793 1.08260 1.78640 0.99544 1.19470 1.09961 1.74961 1.19472 0.99666 1.20676 1.26033 0.89713 1.00064 0.92855 1.19270 0.94356 0.86837 0.98581 1.22102 1.01824 1.04288 0.92839 1.21746 0.95906 1.02987 0.98262 1.22104 0.99380 0.96774 1.02580 0.91268 0.90935 0.91540 0.88962 0.90706 0.89868 0.89334 0.96323 0.96305 0.78183 0.93333 0.87425 0.90265 0.89682 0.91114 0.89878 0.92700 0.91398 0.91162 0.91272 0.92525 0.89970 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.08 9.15 37.16 0.34 -0.74 16 2 C 0.09 0.67 5.60 -4.04 -0.02 0.65 16 3 N -0.60 -7.20 2.47 -173.69 -0.43 -7.62 16 4 C 0.11 1.70 5.59 -4.04 -0.02 1.67 16 5 C 0.14 2.87 6.58 -4.04 -0.03 2.84 16 6 N -0.73 -18.51 5.60 -59.91 -0.34 -18.85 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 10 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 11 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 C 0.50 6.97 7.02 -10.99 -0.08 6.89 16 16 O -0.50 -9.64 15.29 5.56 0.08 -9.56 16 17 C 0.12 1.17 1.41 -69.08 -0.10 1.07 16 18 H 0.14 0.97 2.69 -51.93 -0.14 0.83 16 19 C -0.18 -1.22 8.48 37.16 0.32 -0.91 16 20 N -0.29 -3.79 2.84 -52.93 -0.15 -3.94 16 21 N -0.06 -1.02 12.22 60.35 0.74 -0.28 16 22 N -0.08 -1.44 13.43 60.35 0.81 -0.63 16 23 N -0.30 -4.59 11.71 32.70 0.38 -4.21 16 24 C 0.19 2.37 6.40 -155.43 -1.00 1.38 16 25 C 0.01 0.11 0.75 -155.66 -0.12 -0.01 16 26 C -0.15 -1.25 8.31 37.16 0.31 -0.94 16 27 C -0.13 -0.97 8.00 37.16 0.30 -0.68 16 28 C -0.15 -0.76 8.31 37.16 0.31 -0.45 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.40 5.98 -51.93 -0.31 0.09 16 32 H 0.09 0.66 8.12 -51.93 -0.42 0.24 16 33 H 0.07 0.32 5.35 -51.93 -0.28 0.05 16 34 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 35 H 0.09 1.63 7.34 -51.93 -0.38 1.25 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.11 0.47 3.57 -51.93 -0.19 0.29 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.05 0.46 5.58 -51.93 -0.29 0.17 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.06 0.23 5.58 -51.93 -0.29 -0.06 16 50 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 51 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 400.53 15.07 6.04 6.04 Total: -1.00 -37.63 400.53 -5.27 -42.89 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.07 Total: 2.86 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -0.03 Total: 3.39 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: 1.74 Total: -63.02 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.08 Total: -9.56 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.63 -5.27 -42.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668449795.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.013 kcal (2) G-P(sol) polarization free energy of solvation -37.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds