Wall clock time and date at job start Tue Mar 31 2020 21:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46941 * 2 1 4 4 C 1.46500 * 120.00236 * 275.91091 * 3 2 1 5 5 C 1.53000 * 109.47252 * 270.00453 * 4 3 2 6 6 N 1.46507 * 109.46964 * 179.97438 * 5 4 3 7 7 C 1.36932 * 119.99953 * 179.97438 * 6 5 4 8 8 H 1.08007 * 120.00110 * 359.97438 * 7 6 5 9 9 C 1.38808 * 120.00053 * 180.02562 * 7 6 5 10 10 N 1.31619 * 119.99939 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00086 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47022 * 59.99915 * 11 9 7 13 13 H 1.48498 * 109.46950 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47057 * 300.00123 * 11 9 7 15 15 C 1.34776 * 119.99668 * 95.91851 * 3 2 1 16 16 O 1.21283 * 120.00073 * 186.40878 * 15 3 2 17 17 C 1.50699 * 120.00179 * 6.40586 * 15 3 2 18 18 H 1.08999 * 109.47146 * 49.27373 * 17 15 3 19 19 C 1.52998 * 109.46924 * 289.27414 * 17 15 3 20 20 N 1.46501 * 109.47317 * 169.27502 * 17 15 3 21 21 N 1.29016 * 126.43741 * 59.68358 * 20 17 15 22 22 N 1.28741 * 108.81038 * 179.83513 * 21 20 17 23 23 N 1.28839 * 109.39574 * 0.44507 * 22 21 20 24 24 C 1.31079 * 107.99007 * 359.72921 * 23 22 21 25 25 C 1.50694 * 126.66055 * 179.97438 * 24 23 22 26 26 C 1.53000 * 109.47234 * 240.04598 * 25 24 23 27 27 C 1.52999 * 109.47227 * 0.04565 * 25 24 23 28 28 C 1.53001 * 109.47022 * 120.04439 * 25 24 23 29 29 H 1.09007 * 109.47313 * 67.99802 * 1 2 3 30 30 H 1.08997 * 109.47354 * 187.99822 * 1 2 3 31 31 H 1.08997 * 109.46917 * 308.00000 * 1 2 3 32 32 H 1.09000 * 109.47006 * 240.00104 * 2 1 3 33 33 H 1.08994 * 109.47132 * 119.99947 * 2 1 3 34 34 H 1.09003 * 109.46713 * 30.00727 * 4 3 2 35 35 H 1.08998 * 109.47014 * 149.99854 * 4 3 2 36 36 H 1.08994 * 109.46930 * 299.99732 * 5 4 3 37 37 H 1.08995 * 109.46925 * 60.00049 * 5 4 3 38 38 H 0.96998 * 119.99757 * 359.97438 * 6 5 4 39 39 H 0.97005 * 119.99862 * 180.02562 * 10 9 7 40 40 H 1.09000 * 109.47203 * 66.05857 * 19 17 15 41 41 H 1.09006 * 109.46600 * 186.05290 * 19 17 15 42 42 H 1.08998 * 109.47309 * 306.05332 * 19 17 15 43 43 H 1.08991 * 109.47265 * 60.00159 * 26 25 24 44 44 H 1.09002 * 109.46942 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.47025 * 300.00128 * 26 25 24 46 46 H 1.09006 * 109.47480 * 59.99698 * 27 25 24 47 47 H 1.08997 * 109.47606 * 180.02562 * 27 25 24 48 48 H 1.09005 * 109.47241 * 299.99886 * 27 25 24 49 49 H 1.09000 * 109.46986 * 60.00025 * 28 25 24 50 50 H 1.09004 * 109.46899 * 179.97438 * 28 25 24 51 51 H 1.09000 * 109.47274 * 299.99696 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1393 2.1155 -1.2620 5 6 3.5341 1.8928 -1.8499 6 7 3.6548 2.6265 -3.1122 7 6 4.8236 2.5768 -3.8240 8 1 5.6566 1.9970 -3.4546 9 6 4.9381 3.2725 -5.0197 10 7 3.9232 3.9795 -5.4696 11 14 6.5328 3.2052 -5.9903 12 1 6.8256 1.7982 -6.3643 13 1 6.3985 4.0262 -7.2204 14 1 7.6416 3.7372 -5.1581 15 6 2.3564 1.9764 1.1610 16 8 2.6491 3.1533 1.1765 17 6 2.3706 1.1797 2.4401 18 1 2.9301 0.2568 2.2871 19 6 0.9346 0.8438 2.8477 20 7 3.0073 1.9670 3.4988 21 7 2.6190 3.1162 3.9381 22 7 3.4211 3.4970 4.8702 23 7 4.3375 2.6067 5.0363 24 6 4.1107 1.6300 4.1920 25 6 4.9273 0.3740 4.0288 26 6 5.4684 0.2997 2.5996 27 6 6.0958 0.3935 5.0161 28 6 4.0466 -0.8463 4.3048 29 1 -0.3634 0.3850 -0.9529 30 1 -0.3634 -1.0176 0.1430 31 1 -0.3633 0.6327 0.8098 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.3872 1.7566 -1.9646 35 1 1.9875 3.1793 -1.0793 36 1 4.2861 2.2517 -1.1473 37 1 3.6858 0.8290 -2.0325 38 1 2.9068 3.1476 -3.4437 39 1 4.0032 4.4653 -6.3054 40 1 0.4964 0.1695 2.1119 41 1 0.9378 0.3621 3.8255 42 1 0.3468 1.7605 2.8961 43 1 6.0958 1.1689 2.4029 44 1 6.0586 -0.6091 2.4814 45 1 4.6359 0.2858 1.8961 46 1 5.7104 0.4465 6.0344 47 1 6.6868 -0.5147 4.8978 48 1 6.7233 1.2629 4.8195 49 1 3.2141 -0.8601 3.6014 50 1 4.6372 -1.7548 4.1863 51 1 3.6612 -0.7934 5.3230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668449795.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:46 Heat of formation + Delta-G solvation = 73.606437 kcal Electronic energy + Delta-G solvation = -31454.013658 eV Core-core repulsion = 27426.140195 eV Total energy + Delta-G solvation = -4027.873463 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.39174 -41.59322 -38.54481 -37.84635 -37.05176 -36.42964 -33.91843 -32.98366 -32.30696 -31.58860 -29.46702 -28.53208 -28.32947 -26.63109 -25.86007 -24.98431 -24.58507 -24.11766 -23.02006 -21.23143 -20.43442 -19.25402 -18.73328 -18.53007 -17.89532 -17.33463 -16.79566 -16.59546 -16.32011 -15.77362 -15.56767 -15.28500 -15.19971 -15.14368 -15.02648 -14.67229 -14.25921 -14.02078 -13.80199 -13.71561 -13.54910 -13.28919 -13.10698 -13.03580 -12.97201 -12.92054 -12.80674 -12.75542 -12.72397 -12.55536 -12.37835 -12.23484 -12.19576 -12.19048 -12.05624 -11.97257 -11.89892 -11.79889 -11.22763 -11.00245 -10.91648 -9.92254 -9.10253 -8.00580 -5.31672 0.10327 0.72368 1.10218 1.20403 1.44356 1.48403 1.54252 1.67455 2.52647 2.73356 2.86185 3.08792 3.29413 3.33189 3.41471 3.77103 3.91109 3.91780 3.99748 4.01350 4.08545 4.14946 4.21988 4.32177 4.37588 4.41023 4.49530 4.51798 4.52813 4.60325 4.66057 4.78788 4.79885 4.83898 4.86159 4.92017 4.92903 4.95593 5.03492 5.04758 5.06142 5.20625 5.28745 5.36631 5.37232 5.44159 5.45285 6.12851 6.20480 6.80934 7.26953 7.47951 7.98470 8.22527 9.22542 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.003128 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.304939 B = 8950.514268 C = 9810.043146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.080 3.920 3 N -0.589 5.589 4 C 0.122 3.878 5 C 0.150 3.850 6 N -0.744 5.744 7 C -0.252 4.252 8 H 0.075 0.925 9 C -0.071 4.071 10 N -0.968 5.968 11 Si 0.976 3.024 12 H -0.269 1.269 13 H -0.293 1.293 14 H -0.283 1.283 15 C 0.497 3.503 16 O -0.566 6.566 17 C 0.120 3.880 18 H 0.180 0.820 19 C -0.173 4.173 20 N -0.288 5.288 21 N -0.089 5.089 22 N -0.116 5.116 23 N -0.327 5.327 24 C 0.200 3.800 25 C 0.012 3.988 26 C -0.153 4.153 27 C -0.131 4.131 28 C -0.149 4.149 29 H 0.052 0.948 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.054 0.946 36 H -0.006 1.006 37 H 0.042 0.958 38 H 0.375 0.625 39 H 0.253 0.747 40 H 0.140 0.860 41 H 0.102 0.898 42 H 0.062 0.938 43 H 0.038 0.962 44 H 0.117 0.883 45 H 0.053 0.947 46 H 0.063 0.937 47 H 0.102 0.898 48 H 0.044 0.956 49 H 0.071 0.929 50 H 0.113 0.887 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.107 -22.357 20.264 30.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.040 4.040 3 N -0.322 5.322 4 C -0.001 4.001 5 C 0.023 3.977 6 N -0.387 5.387 7 C -0.384 4.384 8 H 0.093 0.907 9 C -0.264 4.264 10 N -0.618 5.618 11 Si 0.804 3.196 12 H -0.195 1.195 13 H -0.219 1.219 14 H -0.209 1.209 15 C 0.283 3.717 16 O -0.443 6.443 17 C 0.015 3.985 18 H 0.196 0.804 19 C -0.230 4.230 20 N -0.090 5.090 21 N -0.075 5.075 22 N -0.109 5.109 23 N -0.175 5.175 24 C -0.078 4.078 25 C 0.009 3.991 26 C -0.211 4.211 27 C -0.188 4.188 28 C -0.206 4.206 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.072 0.928 36 H 0.012 0.988 37 H 0.060 0.940 38 H 0.207 0.793 39 H 0.062 0.938 40 H 0.157 0.843 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.136 0.864 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.121 0.879 48 H 0.063 0.937 49 H 0.089 0.911 50 H 0.131 0.869 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.095 -20.505 20.854 29.875 hybrid contribution 0.674 0.826 -1.468 1.814 sum -5.421 -19.679 19.386 28.151 Atomic orbital electron populations 1.22456 0.93976 1.04728 1.02819 1.22297 0.96124 0.79412 1.06168 1.47883 1.63804 1.16012 1.04468 1.21372 0.97282 0.96888 0.84565 1.20950 0.94823 0.95463 0.86508 1.42385 1.14910 1.58865 1.22535 1.19545 0.92640 1.24580 1.01596 0.90696 1.25614 1.01178 1.00049 0.99567 1.69809 1.32405 1.36613 1.22955 0.85187 0.78934 0.77920 0.77571 1.19493 1.21919 1.20892 1.20791 0.77494 0.87524 0.85868 1.90855 1.49194 1.17918 1.86354 1.22356 1.00640 0.93532 0.81982 0.80378 1.22697 0.89176 1.04745 1.06407 1.48298 1.20068 1.13676 1.26941 1.78881 1.22480 0.97520 1.08643 1.78587 1.00559 1.20796 1.10999 1.74869 1.19721 1.00449 1.22469 1.26946 0.89079 1.00516 0.91263 1.19640 0.94600 0.86149 0.98727 1.22153 1.01742 1.04562 0.92636 1.21775 0.95693 1.03511 0.97862 1.22172 0.99619 0.95817 1.03030 0.92844 0.87485 0.91691 0.88163 0.86750 0.87849 0.92783 0.98836 0.94006 0.79320 0.93792 0.84251 0.87916 0.91900 0.94287 0.86420 0.92772 0.91777 0.87931 0.93681 0.91061 0.86883 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 9.15 71.98 0.66 -0.77 16 2 C 0.08 0.84 5.60 86.38 0.48 1.32 16 3 N -0.59 -13.37 2.47 -821.81 -2.03 -15.40 16 4 C 0.12 3.90 5.59 86.38 0.48 4.38 16 5 C 0.15 5.99 6.58 86.38 0.57 6.56 16 6 N -0.74 -38.40 5.60 -343.45 -1.92 -40.33 16 7 C -0.25 -14.26 9.99 84.03 0.84 -13.42 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 10 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 11 Si 0.98 46.17 29.55 68.60 2.03 48.20 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 13 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 14 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 15 C 0.50 13.64 7.02 87.66 0.62 14.25 16 16 O -0.57 -23.19 15.29 -3.04 -0.05 -23.23 16 17 C 0.12 2.12 1.41 44.24 0.06 2.18 16 18 H 0.18 1.68 2.69 -2.39 -0.01 1.68 16 19 C -0.17 -1.86 8.48 71.98 0.61 -1.25 16 20 N -0.29 -7.45 2.84 -321.37 -0.91 -8.37 16 21 N -0.09 -3.09 12.22 37.02 0.45 -2.63 16 22 N -0.12 -4.25 13.43 37.01 0.50 -3.76 16 23 N -0.33 -10.40 11.71 -50.45 -0.59 -10.99 16 24 C 0.20 4.87 6.40 138.13 0.88 5.76 16 25 C 0.01 0.17 0.75 -52.93 -0.04 0.13 16 26 C -0.15 -2.13 8.31 71.98 0.60 -1.53 16 27 C -0.13 -1.71 8.00 71.98 0.58 -1.13 16 28 C -0.15 -0.80 8.31 71.98 0.60 -0.20 16 29 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.06 0.56 5.98 -2.39 -0.01 0.54 16 32 H 0.10 0.99 8.12 -2.39 -0.02 0.97 16 33 H 0.11 0.30 5.35 -2.39 -0.01 0.29 16 34 H 0.10 2.87 8.07 -2.39 -0.02 2.85 16 35 H 0.05 2.11 7.34 -2.39 -0.02 2.10 16 36 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.37 20.49 7.67 -92.71 -0.71 19.78 16 39 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 40 H 0.14 0.56 3.57 -2.39 -0.01 0.55 16 41 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.05 0.74 5.58 -2.39 -0.01 0.73 16 46 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 47 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 49 H 0.07 0.16 5.58 -2.39 -0.01 0.15 16 50 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 51 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -89.66 400.53 5.40 -84.27 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.24 Total: 19.01 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 7.41 Total: 12.61 kcal Atomic # 7 Polarization: -136.63 SS G_CDS: -4.23 Total: -140.86 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.05 Total: -23.23 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -89.66 5.40 -84.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668449795.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.874 kcal (2) G-P(sol) polarization free energy of solvation -89.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds